Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g03900 Coffea canephora HOM05D005960 ORTHO05D007537 8.7e-60 233.4 116 100.0
PGR004G2687 Punica granatum HOM05D005960 ORTHO05D007537 1.2e-48 196.4 103 91.3
GSVIVG01011490001 Vitis vinifera HOM05D005960 ORTHO05D007537 2.6e-48 195.3 102 91.2
Eucgr.I01985 Eucalyptus grandis HOM05D005960 ORTHO05D007537 4.5e-48 194.5 103 90.3
Actinidia01975 Actinidia chinensis HOM05D005960 ORTHO05D007537 5.9e-48 194.1 102 91.2
CSS0005506 Camellia sinensis var. sinensis HOM05D005960 ORTHO05D007537 1.0e-47 193.4 102 90.2
Hma1.2p1_3044F.1_g332080 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 1.0e-47 193.4 102 89.2
vmacro05665 Vaccinium macrocarpon HOM05D005960 ORTHO05D007537 1.0e-47 193.4 102 88.2
CSS0003743 Camellia sinensis var. sinensis HOM05D005960 ORTHO05D007537 1.3e-47 193.0 102 89.2
Rhsim10G0046600 Rhododendron simsii HOM05D005960 ORTHO05D007537 1.3e-47 193.0 102 89.2
Rhsim10G0047200 Rhododendron simsii HOM05D005960 ORTHO05D007537 1.3e-47 193.0 102 89.2
AT3G01060 Arabidopsis thaliana HOM05D005960 ORTHO05D007537 2.2e-47 192.2 104 88.5
Potri.017G090100 Populus trichocarpa HOM05D005960 ORTHO05D007537 2.2e-47 192.2 102 88.2
MSTRG.3021 Avicennia marina HOM05D005960 ORTHO05D007537 2.9e-47 191.8 102 90.2
Ciclev10011697m.g Citrus clementina HOM05D005960 ORTHO05D007537 2.9e-47 191.8 102 90.2
Nn4g23343 Nelumbo nucifera HOM05D005960 ORTHO05D007537 2.9e-47 191.8 102 89.2
Oeu000854.1 Olea europaea HOM05D005960 ORTHO05D007537 3.8e-47 191.4 100 93.0
Peaxi162Scf00451g00429 Petunia axillaris HOM05D005960 ORTHO05D007537 3.8e-47 191.4 100 93.0
AL3G11200 Arabidopsis lyrata HOM05D005960 ORTHO05D007537 6.5e-47 190.7 104 87.5
THA.LOC104802965 Tarenaya hassleriana HOM05D005960 ORTHO05D007537 8.5e-47 190.3 104 85.6
Nitab4.5_0001637g0110 Nicotiana tabacum HOM05D005960 ORTHO05D007537 1.1e-46 189.9 99 93.9
RcHm_v2.0_Chr2g0166541 Rosa chinensis HOM05D005960 ORTHO05D007537 1.1e-46 189.9 102 88.2
Thhalv10020707m.g Eutrema salsugineum HOM05D005960 ORTHO05D007537 1.4e-46 189.5 104 86.5
QL02p039732 Quercus lobata HOM05D005960 ORTHO05D007537 1.4e-46 189.5 102 88.2
Sed0006667 Sechium edule HOM05D005960 ORTHO05D007537 1.9e-46 189.1 102 87.3
Sopen03g016610 Solanum pennellii HOM05D005960 ORTHO05D007537 1.9e-46 189.1 102 89.2
Sabra17G0079200 Salix brachista HOM05D005960 ORTHO05D007537 2.5e-46 188.7 102 86.3
Atru.chr8.386 Acer truncatum HOM05D005960 ORTHO05D007537 3.2e-46 188.3 102 87.3
Dinv33810 Davidia involucrata HOM05D005960 ORTHO05D007537 3.2e-46 188.3 101 89.1
HanXRQChr14g0448721 Helianthus annuus HOM05D005960 ORTHO05D007537 3.2e-46 188.3 102 85.3
MD17G1056600 Malus domestica HOM05D005960 ORTHO05D007537 3.2e-46 188.3 102 88.2
QL02p039477 Quercus lobata HOM05D005960 ORTHO05D007537 3.2e-46 188.3 102 87.3
Sp3g01070 Schrenkiella parvula HOM05D005960 ORTHO05D007537 3.2e-46 188.3 104 85.6
Prupe.3G258900 Prunus persica HOM05D005960 ORTHO05D007537 4.2e-46 188.0 102 87.3
Solyc03g013240.4 Solanum lycopersicum HOM05D005960 ORTHO05D007537 4.2e-46 188.0 102 88.2
Carub.0003s0111 Capsella rubella HOM05D005960 ORTHO05D007537 7.2e-46 187.2 104 85.6
CARHR076010 Cardamine hirsuta HOM05D005960 ORTHO05D007537 9.4e-46 186.8 104 85.6
TWI60G0302 Tripterygium wilfordii HOM05D005960 ORTHO05D007537 9.4e-46 186.8 102 86.3
Aa31LG5G12560 Aethionema arabicum HOM05D005960 ORTHO05D007537 1.2e-45 186.4 104 85.6
FvH4_6g47510 Fragaria vesca HOM05D005960 ORTHO05D007537 1.6e-45 186.0 102 86.3
FAN14G4646 Fragaria x ananassa HOM05D005960 ORTHO05D007537 1.6e-45 186.0 102 86.3
MBI16_g15532_MAGBIO Magnolia biondii HOM05D005960 ORTHO05D007537 1.6e-45 186.0 102 86.3
Cfa007624 Carpinus fangiana HOM05D005960 ORTHO05D007537 2.1e-45 185.7 102 86.3
ClCG11G004630 Citrullus lanatus HOM05D005960 ORTHO05D007537 2.1e-45 185.7 102 85.3
CsaV3_5G038400 Cucumis sativus L. HOM05D005960 ORTHO05D007537 2.1e-45 185.7 102 85.3
CAN.G734.6 Capsicum annuum HOM05D005960 ORTHO05D007537 2.7e-45 185.3 102 87.3
MELO3C022021.2 Cucumis melo HOM05D005960 ORTHO05D007537 3.6e-45 184.9 102 84.3
FAN05G2671 Fragaria x ananassa HOM05D005960 ORTHO05D007537 3.6e-45 184.9 102 85.3
FAN02G1813 Fragaria x ananassa HOM05D005960 ORTHO05D007537 4.6e-45 184.5 102 85.3
Duzib147G1008 Durio zibethinus HOM05D005960 ORTHO05D007537 6.1e-45 184.1 102 85.3
Migut.H00653 Erythranthe guttata HOM05D005960 ORTHO05D007537 6.1e-45 184.1 102 84.3
AUR62042562 Chenopodium quinoa HOM05D005960 ORTHO05D007537 1.0e-44 183.3 102 85.3
Haze_14472 Corylus avellana HOM05D005960 ORTHO05D007537 1.0e-44 183.3 102 85.3
ECA238G1943 Erigeron canadensis HOM05D005960 ORTHO05D007537 1.0e-44 183.3 102 83.3
EL10Ac2g03055 Beta vulgaris HOM05D005960 ORTHO05D007537 1.8e-44 182.6 102 84.3
TAR371G0518 Trochodendron aralioides HOM05D005960 ORTHO05D007537 1.8e-44 182.6 102 85.3
BNapus_Darmor_BZH_scaffold_97p00050 Brassica napus HOM05D005960 ORTHO05D007537 2.3e-44 182.2 105 83.8
BolC1t05923H Brassica oleracea HOM05D005960 ORTHO05D007537 2.3e-44 182.2 105 83.8
CiPaw.04G058500 Carya illinoinensis HOM05D005960 ORTHO05D007537 2.3e-44 182.2 102 83.3
Gohir.A11G071600 Gossypium hirsutum HOM05D005960 ORTHO05D007537 2.3e-44 182.2 102 83.3
Gohir.D11G075600 Gossypium hirsutum HOM05D005960 ORTHO05D007537 2.3e-44 182.2 102 83.3
Lj4C116G4 Lonicera japonica HOM05D005960 ORTHO05D007537 2.3e-44 182.2 99 86.9
CANSAT64G2728 Cannabis sativa HOM05D005960 ORTHO05D007537 3.0e-44 181.8 102 83.3
Lsat_1_v5_gn_2_87860 Lactuca sativa HOM05D005960 ORTHO05D007537 3.0e-44 181.8 99 86.9
BNapus_Darmor_BZH_scaffold_113p00110 Brassica napus HOM05D005960 ORTHO05D007537 6.7e-44 180.6 105 82.9
Gorai.007G081300 Gossypium raimondii HOM05D005960 ORTHO05D007537 6.7e-44 180.6 102 82.4
Aqoxy3G00406 Aquilegia oxysepala HOM05D005960 ORTHO05D007537 8.8e-44 180.3 102 83.3
COL.COLO4_21375 Corchorus olitorius HOM05D005960 ORTHO05D007537 8.8e-44 180.3 102 82.4
DCAR_005553 Daucus carota HOM05D005960 ORTHO05D007537 8.8e-44 180.3 100 86.0
BraA01t04634Z Brassica rapa HOM05D005960 ORTHO05D007537 1.1e-43 179.9 105 82.9
AUR62018149 Chenopodium quinoa HOM05D005960 ORTHO05D007537 1.1e-43 179.9 99 87.9
FAN09G3416 Fragaria x ananassa HOM05D005960 ORTHO05D007537 1.1e-43 179.9 99 86.9
PSO013G0364 Papaver somniferum HOM05D005960 ORTHO05D007537 1.5e-43 179.5 102 81.4
Thecc.04G090800 Theobroma cacao HOM05D005960 ORTHO05D007537 2.0e-43 179.1 102 80.4
TPR.G26197 Trifolium pratense HOM05D005960 ORTHO05D007537 2.0e-43 179.1 102 83.3
Ca_04868_v3 Cicer arietinum L. HOM05D005960 ORTHO05D007537 3.3e-43 178.3 102 82.4
Glyma.13G059000 Glycine max HOM05D005960 ORTHO05D007537 3.3e-43 178.3 102 82.4
Actinidia01967 Actinidia chinensis HOM05D005960 ORTHO05D007537 4.3e-43 177.9 104 84.6
TAR627G0454 Trochodendron aralioides HOM05D005960 ORTHO05D007537 5.7e-43 177.6 102 82.4
Cpa.g.sc14.144 Carica papaya HOM05D005960 ORTHO05D007537 7.4e-43 177.2 102 80.4
SalBow1G6551 Salvia bowleyana HOM05D005960 ORTHO05D007537 9.7e-43 176.8 101 87.1
Manes.01G099100 Manihot esculenta HOM05D005960 ORTHO05D007537 1.7e-42 176.0 102 82.4
unitig_736.g22244 Utricularia gibba HOM05D005960 ORTHO05D007537 1.7e-42 176.0 102 81.4
PSO421G0059 Papaver somniferum HOM05D005960 ORTHO05D007537 2.2e-42 175.6 102 79.4
BcaC09g47681 Brassica carinata HOM05D005960 ORTHO05D007537 2.8e-42 175.3 103 83.5
Glyma.19G027400 Glycine max HOM05D005960 ORTHO05D007537 2.8e-42 175.3 102 81.4
ATR0111G015 Amborella trichopoda HOM05D005960 ORTHO05D007537 4.8e-42 174.5 101 81.2
Lj2g0023614 Lotus japonicus HOM05D005960 ORTHO05D007537 3.1e-41 171.8 102 79.4
Phvul.004G033300 Phaseolus vulgaris HOM05D005960 ORTHO05D007537 3.1e-41 171.8 102 80.4
Medtr6g013750 Medicago truncatula HOM05D005960 ORTHO05D007537 4.1e-41 171.4 102 78.4
arahy.Tifrunner.gnm1.ann1.8N3EDT Arachis hypogaea HOM05D005960 ORTHO05D007537 5.3e-41 171.0 102 80.4
Psat1g068640 Pisum sativum HOM05D005960 ORTHO05D007537 6.9e-41 170.6 102 79.4
arahy.Tifrunner.gnm1.ann1.7U9LX7 Arachis hypogaea HOM05D005960 ORTHO05D007537 1.5e-40 169.5 102 79.4
Sc10g0003290 Simmondsia chinensis HOM05D005960 ORTHO05D007537 2.0e-40 169.1 102 74.5
Os05g0512200 Oryza sativa ssp. japonica HOM05D005960 ORTHO05D007537 2.6e-40 168.7 102 78.4
VMungo0464G0831 Vigna mungo HOM05D005960 ORTHO05D007537 3.4e-40 168.3 101 79.2
CDE07G0145 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 7.7e-40 167.2 98 78.6
Lalb_Chr06g0175111 Lupinus albus HOM05D005960 ORTHO05D007537 1.0e-39 166.8 102 76.5
MD09G1061300 Malus domestica HOM05D005960 ORTHO05D007537 5.0e-39 164.5 95 82.1
SEGI_05647 Sequoiadendron giganteum HOM05D005960 ORTHO05D007537 3.1e-33 145.2 102 66.7
Pp3c2_13280 Physcomitrium patens HOM05D005960 ORTHO05D007537 2.8e-26 122.1 104 54.8
AagrBONN_evm.TU.Sc2ySwM_362.2259 Anthoceros agrestis HOM05D005960 ORTHO05D007537 1.0e-23 113.6 101 56.4
Mapoly0015s0039 Marchantia polymorpha HOM05D005960 ORTHO05D007537 2.2e-23 112.5 106 52.8
SMO335G0027 Selaginella moellendorffii HOM05D005960 ORTHO05D007537 6.5e-23 110.9 103 56.3
Nitab4.5_0005196g0010 Nicotiana tabacum HOM05D005960 ORTHO05D007537 6.8e-20 100.9 57 86.0
CDE04G1831 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 1.6e-16 89.7 63 65.1
CBR_g61504 Chara braunii HOM05D005960 ORTHO05D007537 5.5e-14 81.3 124 41.1
Cre13.g562750 Chlamydomonas reinhardtii HOM05D005960 ORTHO05D007537 1.2e-08 63.5 122 29.5


User provided reference genes

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