Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g03890 Coffea canephora HOM05D005960 ORTHO05D007537 3.0e-207 724.9 362 100.0
Manes.01G099100 Manihot esculenta HOM05D005960 ORTHO05D007537 1.1e-166 590.1 356 84.6
VMungo0464G0831 Vigna mungo HOM05D005960 ORTHO05D007537 4.1e-164 581.6 354 84.2
TAR371G0518 Trochodendron aralioides HOM05D005960 ORTHO05D007537 9.1e-164 580.5 353 83.3
Glyma.19G027400 Glycine max HOM05D005960 ORTHO05D007537 1.2e-163 580.1 353 83.3
Rhsim10G0047200 Rhododendron simsii HOM05D005960 ORTHO05D007537 2.6e-163 578.9 373 79.1
Rhsim10G0046600 Rhododendron simsii HOM05D005960 ORTHO05D007537 5.9e-163 577.8 373 79.1
Eucgr.I01985 Eucalyptus grandis HOM05D005960 ORTHO05D007537 1.3e-162 576.6 356 83.7
Lj2g0023614 Lotus japonicus HOM05D005960 ORTHO05D007537 1.3e-162 576.6 356 83.4
vmacro05665 Vaccinium macrocarpon HOM05D005960 ORTHO05D007537 2.2e-162 575.9 348 83.3
Phvul.004G033300 Phaseolus vulgaris HOM05D005960 ORTHO05D007537 3.8e-162 575.1 353 83.6
Atru.chr8.386 Acer truncatum HOM05D005960 ORTHO05D007537 6.5e-162 574.3 356 83.7
Oeu000854.1 Olea europaea HOM05D005960 ORTHO05D007537 8.5e-162 573.9 360 80.6
CSS0003743 Camellia sinensis var. sinensis HOM05D005960 ORTHO05D007537 4.2e-161 571.6 356 82.0
CSS0005506 Camellia sinensis var. sinensis HOM05D005960 ORTHO05D007537 4.2e-161 571.6 356 82.0
Thecc.04G090800 Theobroma cacao HOM05D005960 ORTHO05D007537 4.2e-161 571.6 360 81.7
Cfa007624 Carpinus fangiana HOM05D005960 ORTHO05D007537 5.5e-161 571.2 356 81.7
GSVIVG01011490001 Vitis vinifera HOM05D005960 ORTHO05D007537 5.5e-161 571.2 355 83.4
Ca_04868_v3 Cicer arietinum L. HOM05D005960 ORTHO05D007537 9.4e-161 570.5 353 81.3
Psat1g068640 Pisum sativum HOM05D005960 ORTHO05D007537 2.1e-160 569.3 354 81.9
Hma1.2p1_3044F.1_g332080 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 2.7e-160 568.9 354 81.6
CiPaw.04G058500 Carya illinoinensis HOM05D005960 ORTHO05D007537 3.6e-160 568.5 353 82.2
FvH4_6g47510 Fragaria vesca HOM05D005960 ORTHO05D007537 3.6e-160 568.5 357 81.8
Duzib147G1008 Durio zibethinus HOM05D005960 ORTHO05D007537 7.9e-160 567.4 358 80.7
Cpa.g.sc14.144 Carica papaya HOM05D005960 ORTHO05D007537 1.0e-159 567.0 355 81.1
Glyma.13G059000 Glycine max HOM05D005960 ORTHO05D007537 1.0e-159 567.0 353 81.6
MD17G1056600 Malus domestica HOM05D005960 ORTHO05D007537 1.0e-159 567.0 354 81.4
PGR004G2687 Punica granatum HOM05D005960 ORTHO05D007537 1.0e-159 567.0 359 81.1
ClCG11G004630 Citrullus lanatus HOM05D005960 ORTHO05D007537 1.4e-159 566.6 352 81.2
Medtr6g013750 Medicago truncatula HOM05D005960 ORTHO05D007537 1.4e-159 566.6 353 81.0
QL02p039477 Quercus lobata HOM05D005960 ORTHO05D007537 1.4e-159 566.6 363 80.2
TWI60G0302 Tripterygium wilfordii HOM05D005960 ORTHO05D007537 2.3e-159 565.8 353 81.6
AUR62018147 Chenopodium quinoa HOM05D005960 ORTHO05D007537 3.0e-159 565.5 357 80.7
FAN05G2671 Fragaria x ananassa HOM05D005960 ORTHO05D007537 3.0e-159 565.5 357 81.5
TPR.G26197 Trifolium pratense HOM05D005960 ORTHO05D007537 3.0e-159 565.5 353 81.0
QL02p039732 Quercus lobata HOM05D005960 ORTHO05D007537 3.9e-159 565.1 363 80.2
Actinidia01975 Actinidia chinensis HOM05D005960 ORTHO05D007537 5.2e-159 564.7 361 80.6
AUR62042562 Chenopodium quinoa HOM05D005960 ORTHO05D007537 1.1e-158 563.5 356 79.8
CAN.G734.6 Capsicum annuum HOM05D005960 ORTHO05D007537 2.6e-158 562.4 359 80.8
MBI16_g15532_MAGBIO Magnolia biondii HOM05D005960 ORTHO05D007537 5.7e-158 561.2 352 80.4
MELO3C022021.2 Cucumis melo HOM05D005960 ORTHO05D007537 9.7e-158 560.5 351 80.6
CANSAT64G2728 Cannabis sativa HOM05D005960 ORTHO05D007537 2.2e-157 559.3 354 80.8
COL.COLO4_21375 Corchorus olitorius HOM05D005960 ORTHO05D007537 6.3e-157 557.8 357 80.4
CsaV3_5G038400 Cucumis sativus L. HOM05D005960 ORTHO05D007537 6.3e-157 557.8 351 80.6
RcHm_v2.0_Chr2g0166541 Rosa chinensis HOM05D005960 ORTHO05D007537 8.2e-157 557.4 357 80.7
Potri.017G090100 Populus trichocarpa HOM05D005960 ORTHO05D007537 1.8e-156 556.2 358 79.3
EL10Ac2g03055 Beta vulgaris HOM05D005960 ORTHO05D007537 2.4e-156 555.8 354 79.4
Ciclev10011697m.g Citrus clementina HOM05D005960 ORTHO05D007537 3.1e-156 555.4 356 80.3
Gohir.A11G071600 Gossypium hirsutum HOM05D005960 ORTHO05D007537 3.1e-156 555.4 361 79.5
HanXRQChr14g0448721 Helianthus annuus HOM05D005960 ORTHO05D007537 4.1e-156 555.1 355 80.0
Aqoxy3G00406 Aquilegia oxysepala HOM05D005960 ORTHO05D007537 5.3e-156 554.7 354 79.7
arahy.Tifrunner.gnm1.ann1.8N3EDT Arachis hypogaea HOM05D005960 ORTHO05D007537 7.0e-156 554.3 362 79.0
Sed0006667 Sechium edule HOM05D005960 ORTHO05D007537 7.0e-156 554.3 352 81.2
Gorai.007G081300 Gossypium raimondii HOM05D005960 ORTHO05D007537 9.1e-156 553.9 361 79.2
arahy.Tifrunner.gnm1.ann1.7U9LX7 Arachis hypogaea HOM05D005960 ORTHO05D007537 2.6e-155 552.4 362 79.0
Migut.H00653 Erythranthe guttata HOM05D005960 ORTHO05D007537 2.2e-154 549.3 355 79.2
DCAR_005553 Daucus carota HOM05D005960 ORTHO05D007537 5.0e-154 548.1 327 83.8
Sopen03g016610 Solanum pennellii HOM05D005960 ORTHO05D007537 1.1e-153 547.0 326 84.7
Lalb_Chr06g0175111 Lupinus albus HOM05D005960 ORTHO05D007537 2.5e-153 545.8 358 78.5
Solyc03g013240.4 Solanum lycopersicum HOM05D005960 ORTHO05D007537 2.5e-153 545.8 326 84.7
PSO421G0059 Papaver somniferum HOM05D005960 ORTHO05D007537 9.4e-153 543.9 353 76.5
THA.LOC104802965 Tarenaya hassleriana HOM05D005960 ORTHO05D007537 1.2e-152 543.5 352 79.3
PSO013G0364 Papaver somniferum HOM05D005960 ORTHO05D007537 4.7e-152 541.6 353 76.2
Sabra17G0079200 Salix brachista HOM05D005960 ORTHO05D007537 4.7e-152 541.6 374 75.9
Zm00001eb292620 Zea mays HOM05D005960 ORTHO05D007537 1.8e-151 539.7 308 86.0
BNapus_Darmor_BZH_scaffold_97p00050 Brassica napus HOM05D005960 ORTHO05D007537 4.0e-151 538.5 338 79.9
Sp3g01070 Schrenkiella parvula HOM05D005960 ORTHO05D007537 5.2e-151 538.1 341 79.8
BNapus_Darmor_BZH_scaffold_113p00110 Brassica napus HOM05D005960 ORTHO05D007537 1.2e-150 537.0 351 78.9
BraA01t04634Z Brassica rapa HOM05D005960 ORTHO05D007537 1.5e-150 536.6 351 78.9
Haze_14472 Corylus avellana HOM05D005960 ORTHO05D007537 1.5e-150 536.6 419 69.2
Aa31LG5G12560 Aethionema arabicum HOM05D005960 ORTHO05D007537 3.3e-150 535.4 346 79.5
Thhalv10020707m.g Eutrema salsugineum HOM05D005960 ORTHO05D007537 3.3e-150 535.4 351 78.9
BolC1t05923H Brassica oleracea HOM05D005960 ORTHO05D007537 1.3e-149 533.5 338 79.0
Carub.0003s0111 Capsella rubella HOM05D005960 ORTHO05D007537 3.7e-149 531.9 355 77.2
CARHR076010 Cardamine hirsuta HOM05D005960 ORTHO05D007537 3.7e-149 531.9 350 78.6
SalBow1G6551 Salvia bowleyana HOM05D005960 ORTHO05D007537 3.7e-149 531.9 354 78.0
AT3G01060 Arabidopsis thaliana HOM05D005960 ORTHO05D007537 1.1e-148 530.4 346 78.0
Os05g0512200 Oryza sativa ssp. japonica HOM05D005960 ORTHO05D007537 2.4e-148 529.3 293 87.7
AL3G11200 Arabidopsis lyrata HOM05D005960 ORTHO05D007537 3.1e-148 528.9 349 77.7
ECA238G1943 Erigeron canadensis HOM05D005960 ORTHO05D007537 3.1e-148 528.9 357 74.8
Peaxi162Scf00451g00429 Petunia axillaris HOM05D005960 ORTHO05D007537 1.0e-146 523.9 359 76.3
unitig_736.g22244 Utricularia gibba HOM05D005960 ORTHO05D007537 1.1e-145 520.4 309 82.2
ATR0111G015 Amborella trichopoda HOM05D005960 ORTHO05D007537 1.2e-144 516.9 351 72.9
Lsat_1_v5_gn_2_87860 Lactuca sativa HOM05D005960 ORTHO05D007537 3.6e-144 515.4 344 75.3
Nitab4.5_0005196g0010 Nicotiana tabacum HOM05D005960 ORTHO05D007537 1.3e-141 506.9 353 75.1
Lj4C116G4 Lonicera japonica HOM05D005960 ORTHO05D007537 2.2e-141 506.1 354 74.3
Nitab4.5_0001637g0110 Nicotiana tabacum HOM05D005960 ORTHO05D007537 1.4e-140 503.4 359 73.8
HPP92_018459 Vanilla planifolia HOM05D005960 ORTHO05D007537 3.1e-140 502.3 333 76.6
Nn4g23343 Nelumbo nucifera HOM05D005960 ORTHO05D007537 4.5e-139 498.4 262 92.0
Mapoly0015s0039 Marchantia polymorpha HOM05D005960 ORTHO05D007537 3.8e-138 495.4 302 78.5
SEGI_05647 Sequoiadendron giganteum HOM05D005960 ORTHO05D007537 5.0e-138 495.0 296 78.7
BcaC09g47681 Brassica carinata HOM05D005960 ORTHO05D007537 1.1e-137 493.8 326 76.7
FAN02G1813 Fragaria x ananassa HOM05D005960 ORTHO05D007537 3.0e-135 485.7 257 91.8
FAN14G4646 Fragaria x ananassa HOM05D005960 ORTHO05D007537 1.5e-134 483.4 357 72.8
Dinv11487 Davidia involucrata HOM05D005960 ORTHO05D007537 4.4e-134 481.9 313 80.2
Sc10g0003290 Simmondsia chinensis HOM05D005960 ORTHO05D007537 9.8e-134 480.7 270 86.3
Pp3c2_13280 Physcomitrium patens HOM05D005960 ORTHO05D007537 1.1e-132 477.2 355 68.5
Dinv33810 Davidia involucrata HOM05D005960 ORTHO05D007537 2.4e-132 476.1 355 73.2
SMO335G0027 Selaginella moellendorffii HOM05D005960 ORTHO05D007537 2.4e-132 476.1 299 74.6
CDE07G2056 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 2.3e-130 469.5 318 74.2
Hma1.2p1_1813F.1_g303790 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 3.0e-127 459.1 253 87.7
Hma1.2p1_3044F.1_g332082 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 3.0e-127 459.1 253 87.7
Prupe.3G258900 Prunus persica HOM05D005960 ORTHO05D007537 2.0e-123 446.4 232 94.0
AagrBONN_evm.TU.Sc2ySwM_362.2259 Anthoceros agrestis HOM05D005960 ORTHO05D007537 5.0e-122 441.8 286 72.7
Gohir.D11G075600 Gossypium hirsutum HOM05D005960 ORTHO05D007537 2.3e-119 433.0 232 90.5
CBR_g61504 Chara braunii HOM05D005960 ORTHO05D007537 1.2e-115 420.6 290 69.0
Actinidia01967 Actinidia chinensis HOM05D005960 ORTHO05D007537 1.2e-107 394.0 283 73.5
CDE04G1831 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 1.7e-106 390.2 355 62.5
Cre13.g562750 Chlamydomonas reinhardtii HOM05D005960 ORTHO05D007537 1.8e-95 353.6 292 57.9
MSTRG.3021 Avicennia marina HOM05D005960 ORTHO05D007537 1.3e-90 337.4 179 90.5
FAN09G3416 Fragaria x ananassa HOM05D005960 ORTHO05D007537 4.6e-83 312.4 317 56.8
TAR627G0454 Trochodendron aralioides HOM05D005960 ORTHO05D007537 7.9e-75 285.0 231 65.4
MCO03G230 Micromonas commoda HOM05D005960 ORTHO05D007537 1.4e-71 274.2 289 48.1
MCO05G128 Micromonas commoda HOM05D005960 ORTHO05D007537 2.6e-54 216.9 287 43.2
PRCOL_00004151 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 3.9e-50 203.0 284 42.3
MD09G1061300 Malus domestica HOM05D005960 ORTHO05D007537 9.7e-49 198.4 147 74.1
PRCOL_00002980 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 6.5e-45 185.7 291 38.5
TPR.G22619 Trifolium pratense HOM05D005960 ORTHO05D007537 3.9e-42 176.4 148 64.2
MCO08G069 Micromonas commoda HOM05D005960 ORTHO05D007537 3.7e-40 169.9 309 35.3
PRCOL_00003347 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 4.1e-39 166.4 284 36.3
EL10Ac2g03064 Beta vulgaris HOM05D005960 ORTHO05D007537 2.0e-38 164.1 99 84.8
Potri.004G125301 Populus trichocarpa HOM05D005960 ORTHO05D007537 5.0e-37 159.5 154 60.4
MCO08G121 Micromonas commoda HOM05D005960 ORTHO05D007537 2.6e-33 147.1 318 31.4
Oeu061493.1 Olea europaea HOM05D005960 ORTHO05D007537 1.1e-20 105.1 51 88.2
PGSC0003DMG400033541 Solanum tuberosum HOM05D005960 ORTHO05D007537 9.2e-15 85.5 46 95.7
MD09G1061200 Malus domestica HOM05D005960 ORTHO05D007537 1.0e-10 72.0 103 44.7
MCO08G023 Micromonas commoda HOM05D005960 ORTHO05D270145 3.0e-10 70.5 160 28.8
Zm00001eb030310 Zea mays HOM05D005960 ORTHO05D051632 2.0e-09 67.8 40 85.0
Zm00001eb250570 Zea mays HOM05D005960 ORTHO05D051632 4.4e-09 66.6 45 71.1


User provided reference genes

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