Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g03810 Coffea canephora HOM05D003516 ORTHO05D004068 8.1e-188 660.2 327 100.0
Atru.chr2.3146 Acer truncatum HOM05D003516 ORTHO05D004068 3.1e-147 525.4 327 77.1
Nitab4.5_0000565g0050 Nicotiana tabacum HOM05D003516 ORTHO05D004068 2.6e-146 522.3 324 76.2
VMungo1383G2485 Vigna mungo HOM05D003516 ORTHO05D004068 3.5e-146 521.9 327 75.2
CSS0008989 Camellia sinensis var. sinensis HOM05D003516 ORTHO05D004068 1.7e-145 519.6 324 75.3
Solyc02g088490.3 Solanum lycopersicum HOM05D003516 ORTHO05D004068 1.7e-145 519.6 324 75.6
TAR371G0601 Trochodendron aralioides HOM05D003516 ORTHO05D004068 2.2e-145 519.2 327 75.2
CiPaw.03G092000 Carya illinoinensis HOM05D003516 ORTHO05D004068 3.8e-145 518.5 324 76.2
Sopen02g033200 Solanum pennellii HOM05D003516 ORTHO05D004068 3.8e-145 518.5 324 75.3
QL02p039347 Quercus lobata HOM05D003516 ORTHO05D004068 5.0e-145 518.1 326 76.7
FvH4_6g47610 Fragaria vesca HOM05D003516 ORTHO05D004068 1.1e-144 516.9 324 75.6
RcHm_v2.0_Chr2g0166731 Rosa chinensis HOM05D003516 ORTHO05D004068 1.1e-144 516.9 324 75.9
Nitab4.5_0008573g0050 Nicotiana tabacum HOM05D003516 ORTHO05D004068 3.2e-144 515.4 324 75.3
PGSC0003DMG402001347 Solanum tuberosum HOM05D003516 ORTHO05D004068 1.6e-143 513.1 324 74.7
Thecc.04G089600 Theobroma cacao HOM05D003516 ORTHO05D004068 1.6e-143 513.1 327 73.7
Phvul.008G040100 Phaseolus vulgaris HOM05D003516 ORTHO05D004068 2.1e-143 512.7 327 74.0
FAN05G5016 Fragaria x ananassa HOM05D003516 ORTHO05D004068 6.1e-143 511.1 324 74.7
Rhsim10G0034300 Rhododendron simsii HOM05D003516 ORTHO05D004068 8.0e-143 510.8 324 74.4
PGSC0003DMG401001347 Solanum tuberosum HOM05D003516 ORTHO05D004068 1.0e-142 510.4 324 74.7
CAN.G206.192 Capsicum annuum HOM05D003516 ORTHO05D004068 1.8e-142 509.6 324 74.1
Actinidia01972 Actinidia chinensis HOM05D003516 ORTHO05D004068 2.3e-142 509.2 327 74.6
MD09G1060600 Malus domestica HOM05D003516 ORTHO05D004068 3.0e-142 508.8 324 75.6
Eucgr.J01366 Eucalyptus grandis HOM05D003516 ORTHO05D004068 4.0e-142 508.4 327 73.7
Glyma.08G241300 Glycine max HOM05D003516 ORTHO05D004068 4.0e-142 508.4 324 73.5
vmacro05670 Vaccinium macrocarpon HOM05D003516 ORTHO05D004068 8.8e-142 507.3 328 74.4
Hma1.2p1_0255F.1_g103250 Hydrangea macrophylla HOM05D003516 ORTHO05D004068 1.5e-141 506.5 327 74.6
TWI34G1153 Tripterygium wilfordii HOM05D003516 ORTHO05D004068 1.5e-141 506.5 327 72.5
Lj1g0021677 Lotus japonicus HOM05D003516 ORTHO05D004068 2.6e-141 505.8 327 73.4
SalBow1G1829 Salvia bowleyana HOM05D003516 ORTHO05D004068 2.6e-141 505.8 327 70.9
Cfa007618 Carpinus fangiana HOM05D003516 ORTHO05D004068 5.7e-141 504.6 328 74.1
Duzib264G1026 Durio zibethinus HOM05D003516 ORTHO05D004068 1.3e-140 503.4 327 72.2
Lsat_1_v5_gn_2_87981 Lactuca sativa HOM05D003516 ORTHO05D004068 1.7e-140 503.1 324 73.5
Nitab4.5_0000565g0040 Nicotiana tabacum HOM05D003516 ORTHO05D004068 1.7e-140 503.1 324 72.8
RcHm_v2.0_Chr2g0166761 Rosa chinensis HOM05D003516 ORTHO05D004068 3.7e-140 501.9 322 73.6
Lalb_Chr17g0337081 Lupinus albus HOM05D003516 ORTHO05D004068 4.8e-140 501.5 327 72.2
SalBow1G1268 Salvia bowleyana HOM05D003516 ORTHO05D004068 6.3e-140 501.1 327 70.3
TAR371G1100 Trochodendron aralioides HOM05D003516 ORTHO05D004068 6.3e-140 501.1 325 73.5
TWI34G0121 Tripterygium wilfordii HOM05D003516 ORTHO05D004068 8.3e-140 500.7 327 71.3
DCAR_011066 Daucus carota HOM05D003516 ORTHO05D004068 1.1e-139 500.4 327 72.5
Ciclev10011701m.g Citrus clementina HOM05D003516 ORTHO05D004068 1.8e-139 499.6 327 72.2
Migut.H00662 Erythranthe guttata HOM05D003516 ORTHO05D004068 2.4e-139 499.2 327 72.5
Manes.01G099500 Manihot esculenta HOM05D003516 ORTHO05D004068 5.3e-139 498.0 327 71.3
PSO541G0811 Papaver somniferum HOM05D003516 ORTHO05D004068 5.3e-139 498.0 328 72.6
AUR62018134 Chenopodium quinoa HOM05D003516 ORTHO05D004068 7.0e-139 497.7 327 73.7
Potri.004G126100 Populus trichocarpa HOM05D003516 ORTHO05D004068 7.0e-139 497.7 327 71.9
Nitab4.5_0003216g0010 Nicotiana tabacum HOM05D003516 ORTHO05D004068 1.6e-138 496.5 324 71.9
COL.COLO4_12254 Corchorus olitorius HOM05D003516 ORTHO05D004068 2.0e-138 496.1 342 70.8
arahy.Tifrunner.gnm1.ann1.0J6LH7 Arachis hypogaea HOM05D003516 ORTHO05D004068 2.7e-138 495.7 327 71.9
MELO3C009836.2 Cucumis melo HOM05D003516 ORTHO05D004068 3.5e-138 495.4 323 71.5
FAN09G4649 Fragaria x ananassa HOM05D003516 ORTHO05D004068 3.5e-138 495.4 334 71.3
Sabra04G0066900 Salix brachista HOM05D003516 ORTHO05D004068 4.5e-138 495.0 335 71.3
Nitab4.5_0008573g0020 Nicotiana tabacum HOM05D003516 ORTHO05D004068 1.0e-137 493.8 324 71.3
RcHm_v2.0_Chr2g0166771 Rosa chinensis HOM05D003516 ORTHO05D004068 1.0e-137 493.8 322 73.0
Prupe.3G260300 Prunus persica HOM05D003516 ORTHO05D004068 3.8e-137 491.9 327 73.1
Cpa.g.sc14.137 Carica papaya HOM05D003516 ORTHO05D004068 6.5e-137 491.1 325 72.6
Gohir.D04G045800 Gossypium hirsutum HOM05D003516 ORTHO05D004068 6.5e-137 491.1 326 71.2
Gorai.012G051000 Gossypium raimondii HOM05D003516 ORTHO05D004068 6.5e-137 491.1 326 71.2
PSO675G4642 Papaver somniferum HOM05D003516 ORTHO05D004068 6.5e-137 491.1 328 71.6
Nn4g23324 Nelumbo nucifera HOM05D003516 ORTHO05D004068 8.5e-137 490.7 311 74.6
Ca_04330_v3 Cicer arietinum L. HOM05D003516 ORTHO05D004068 1.9e-136 489.6 328 70.4
Ah.12g062520 Amaranthus hybridus HOM05D003516 ORTHO05D004068 3.2e-136 488.8 327 71.6
TPR.G33465 Trifolium pratense HOM05D003516 ORTHO05D004068 7.2e-136 487.6 328 72.0
Gohir.A05G369500 Gossypium hirsutum HOM05D003516 ORTHO05D004068 2.1e-135 486.1 326 70.2
Medtr7g011890 Medicago truncatula HOM05D003516 ORTHO05D004068 2.1e-135 486.1 327 70.9
AUR62034473 Chenopodium quinoa HOM05D003516 ORTHO05D004068 3.6e-135 485.3 324 73.8
SGA_v2.0_scaffold4G02421 Striga asiatica HOM05D003516 ORTHO05D004068 4.7e-135 485.0 328 70.4
Sc14g0006110 Simmondsia chinensis HOM05D003516 ORTHO05D004068 1.0e-134 483.8 324 71.6
CsaV3_3G041030 Cucumis sativus L. HOM05D003516 ORTHO05D004068 1.4e-134 483.4 323 70.6
FvH4_6g47650 Fragaria vesca HOM05D003516 ORTHO05D004068 1.4e-134 483.4 324 72.5
BcaB06g27324 Brassica carinata HOM05D003516 ORTHO05D004068 2.3e-134 482.6 324 69.1
MBI19_g41331_MAGBIO Magnolia biondii HOM05D003516 ORTHO05D004068 2.3e-134 482.6 327 69.4
FvH4_6g47700 Fragaria vesca HOM05D003516 ORTHO05D004068 8.8e-134 480.7 324 71.9
FAN14G0784 Fragaria x ananassa HOM05D003516 ORTHO05D004068 8.8e-134 480.7 324 71.9
HanXRQChr14g0448681 Helianthus annuus HOM05D003516 ORTHO05D004068 1.2e-133 480.3 321 71.3
MSTRG.3024 Avicennia marina HOM05D003516 ORTHO05D004068 1.5e-133 479.9 327 70.3
Thhalv10027760m.g Eutrema salsugineum HOM05D003516 ORTHO05D004068 1.5e-133 479.9 321 69.5
BcaB06g27298 Brassica carinata HOM05D003516 ORTHO05D004068 2.0e-133 479.6 324 68.5
BolC4t26158H Brassica oleracea HOM05D003516 ORTHO05D004068 2.0e-133 479.6 324 68.5
BraA04t16875Z Brassica rapa HOM05D003516 ORTHO05D004068 2.0e-133 479.6 324 68.5
Carub.0007s3653 Capsella rubella HOM05D003516 ORTHO05D004068 2.0e-133 479.6 321 70.4
ECA238G2285 Erigeron canadensis HOM05D003516 ORTHO05D004068 3.4e-133 478.8 321 72.0
AL7G50920 Arabidopsis lyrata HOM05D003516 ORTHO05D004068 4.4e-133 478.4 321 69.8
CAN.G206.193 Capsicum annuum HOM05D003516 ORTHO05D004068 1.3e-132 476.9 324 70.7
ECA238G0029 Erigeron canadensis HOM05D003516 ORTHO05D004068 1.7e-132 476.5 321 71.7
TAR371G1088 Trochodendron aralioides HOM05D003516 ORTHO05D004068 1.7e-132 476.5 374 63.9
AT5G39410 Arabidopsis thaliana HOM05D003516 ORTHO05D004068 3.7e-132 475.3 321 68.8
Hund15565 Selenicereus undatus HOM05D003516 ORTHO05D004068 3.7e-132 475.3 327 70.9
C04p45730 Brassica napus HOM05D003516 ORTHO05D004068 4.8e-132 474.9 324 67.9
Sp7g02570 Schrenkiella parvula HOM05D003516 ORTHO05D004068 4.8e-132 474.9 327 67.6
Aa31LG9G16580 Aethionema arabicum HOM05D003516 ORTHO05D004068 6.3e-132 474.6 324 67.6
PGSC0003DMG400001348 Solanum tuberosum HOM05D003516 ORTHO05D004068 1.8e-131 473.0 326 71.2
Sopen02g033240 Solanum pennellii HOM05D003516 ORTHO05D004068 4.1e-131 471.9 324 70.7
A04p12100 Brassica napus HOM05D003516 ORTHO05D004068 1.6e-130 469.9 327 67.9
unitig_744.g24003 Utricularia gibba HOM05D003516 ORTHO05D004068 3.8e-129 465.3 325 66.2
MSTRG.23906 Avicennia marina HOM05D003516 ORTHO05D004068 6.6e-129 464.5 327 68.5
EL10Ac2g03040 Beta vulgaris HOM05D003516 ORTHO05D004068 6.6e-129 464.5 372 63.2
Atru.chr2.2165 Acer truncatum HOM05D003516 ORTHO05D004068 3.3e-128 462.2 324 67.6
CARHR262950 Cardamine hirsuta HOM05D003516 ORTHO05D004068 5.5e-128 461.5 324 67.3
Lalb_Chr02g0159071 Lupinus albus HOM05D003516 ORTHO05D004068 7.2e-128 461.1 327 66.1
Aqoxy3G03552 Aquilegia oxysepala HOM05D003516 ORTHO05D004068 2.1e-127 459.5 323 67.5
ATR0111G016 Amborella trichopoda HOM05D003516 ORTHO05D004068 2.8e-127 459.1 327 65.7
Peaxi162Scf00166g00944 Petunia axillaris HOM05D003516 ORTHO05D004068 1.4e-126 456.8 325 67.7
CDE04G1400 Ceratophyllum demersum HOM05D003516 ORTHO05D004068 3.0e-126 455.7 324 65.7
ClCG10G015450 Citrullus lanatus HOM05D003516 ORTHO05D004068 6.8e-126 454.5 296 71.3
Glyma.13G059300 Glycine max HOM05D003516 ORTHO05D004068 2.2e-124 449.5 327 65.1
THA.LOC104823897 Tarenaya hassleriana HOM05D003516 ORTHO05D004068 2.2e-124 449.5 325 65.2
Nn4g23326 Nelumbo nucifera HOM05D003516 ORTHO05D004068 8.3e-124 447.6 328 67.1
FAN14G3818 Fragaria x ananassa HOM05D003516 ORTHO05D004068 4.1e-123 445.3 324 66.7
Zm00001eb326640 Zea mays HOM05D003516 ORTHO05D004068 1.6e-122 443.4 320 66.6
HPP92_020419 Vanilla planifolia HOM05D003516 ORTHO05D004068 5.9e-122 441.4 323 65.6
TPR.G26192 Trifolium pratense HOM05D003516 ORTHO05D004068 7.8e-122 441.0 329 63.8
arahy.Tifrunner.gnm1.ann1.BNNE9K Arachis hypogaea HOM05D003516 ORTHO05D004068 1.7e-121 439.9 327 64.2
Dinv11492 Davidia involucrata HOM05D003516 ORTHO05D004068 6.6e-121 438.0 327 67.3
Ca_04865_v3 Cicer arietinum L. HOM05D003516 ORTHO05D004068 2.1e-119 433.0 328 62.8
Lsat_1_v5_gn_2_88001 Lactuca sativa HOM05D003516 ORTHO05D004068 2.8e-119 432.6 324 64.8
Medtr4g094268 Medicago truncatula HOM05D003516 ORTHO05D004068 6.1e-119 431.4 328 61.9
Phvul.004G033000 Phaseolus vulgaris HOM05D003516 ORTHO05D004068 6.1e-119 431.4 324 63.3
HanXRQChr14g0448661 Helianthus annuus HOM05D003516 ORTHO05D004068 1.8e-118 429.9 322 65.5
PGSC0003DMG400001349 Solanum tuberosum HOM05D003516 ORTHO05D004068 8.9e-118 427.6 321 65.7
AUR62034468 Chenopodium quinoa HOM05D003516 ORTHO05D004068 2.6e-117 426.0 327 64.8
Lj2g0008898 Lotus japonicus HOM05D003516 ORTHO05D004068 2.6e-117 426.0 329 62.3
Sed0012723 Sechium edule HOM05D003516 ORTHO05D004068 2.6e-117 426.0 308 68.2
HPP92_023641 Vanilla planifolia HOM05D003516 ORTHO05D004068 4.4e-117 425.2 324 62.7
Psat1g069160 Pisum sativum HOM05D003516 ORTHO05D004068 9.8e-117 424.1 329 59.3
ECA238G1443 Erigeron canadensis HOM05D003516 ORTHO05D004068 1.7e-116 423.3 326 63.8
VMungo0464G1139 Vigna mungo HOM05D003516 ORTHO05D004068 1.7e-116 423.3 324 62.0
HPP92_023623 Vanilla planifolia HOM05D003516 ORTHO05D004068 2.2e-116 422.9 324 62.3
SEGI_01701 Sequoiadendron giganteum HOM05D003516 ORTHO05D004068 4.1e-115 418.7 324 59.6
ClCG10G015460 Citrullus lanatus HOM05D003516 ORTHO05D004068 7.3e-112 407.9 327 62.4
Lsat_1_v5_gn_2_88041 Lactuca sativa HOM05D003516 ORTHO05D004068 9.5e-112 407.5 325 62.8
arahy.Tifrunner.gnm1.ann1.3ST4SV Arachis hypogaea HOM05D003516 ORTHO05D004068 1.1e-110 404.1 327 60.2
Haze_14476 Corylus avellana HOM05D003516 ORTHO05D004068 4.4e-109 398.7 265 73.2
MELO3C009835.2 Cucumis melo HOM05D003516 ORTHO05D004068 7.1e-107 391.3 323 60.4
SEGI_26660 Sequoiadendron giganteum HOM05D003516 ORTHO05D004068 2.3e-105 386.3 324 58.0
Lj4A115T83 Lonicera japonica HOM05D003516 ORTHO05D004068 4.6e-98 362.1 229 74.7
PGR056G0004 Punica granatum HOM05D003516 ORTHO05D004068 1.9e-96 356.7 237 72.6
GSVIVG01011482001 Vitis vinifera HOM05D003516 ORTHO05D004068 2.5e-96 356.3 257 68.1
Sed0002556 Sechium edule HOM05D003516 ORTHO05D004068 8.1e-95 351.3 304 58.6
CsaV3_3G041020 Cucumis sativus L. HOM05D003516 ORTHO05D004068 9.3e-91 337.8 322 54.3
Psat7g019480 Pisum sativum HOM05D003516 ORTHO05D004068 1.0e-89 334.3 233 70.0
Pp3c7_23970 Physcomitrium patens HOM05D003516 ORTHO05D004068 6.6e-89 331.6 325 51.4
Nn4g23327 Nelumbo nucifera HOM05D003516 ORTHO05D004068 5.6e-88 328.6 232 68.5
HanXRQChr14g0448671 Helianthus annuus HOM05D003516 ORTHO05D004068 1.3e-87 327.4 288 59.4
Psat0s4061g0240 Pisum sativum HOM05D003516 ORTHO05D004068 1.3e-87 327.4 223 67.7
Mapoly0061s0022 Marchantia polymorpha HOM05D003516 ORTHO05D004068 2.8e-87 326.2 326 48.5
SMO364G0897 Selaginella moellendorffii HOM05D003516 ORTHO05D004068 1.5e-85 320.5 324 49.1
Os07g0597100 Oryza sativa ssp. japonica HOM05D003516 ORTHO05D004068 1.0e-81 307.8 218 64.7
Psat3g198560 Pisum sativum HOM05D003516 ORTHO05D004068 3.3e-80 302.8 328 49.7
AagrBONN_evm.TU.Sc2ySwM_228.5734 Anthoceros agrestis HOM05D003516 ORTHO05D004068 4.0e-78 295.8 325 44.3
HanXRQChr17g0546731 Helianthus annuus HOM05D003516 ORTHO05D004068 2.9e-76 289.7 227 59.0
SEGI_25923 Sequoiadendron giganteum HOM05D003516 ORTHO05D004068 5.4e-75 285.4 255 55.7
Lsat_1_v5_gn_3_88480 Lactuca sativa HOM05D003516 ORTHO05D004068 5.3e-70 268.9 227 59.0
AagrBONN_evm.TU.Sc2ySwM_369.232 Anthoceros agrestis HOM05D003516 ORTHO05D004068 9.0e-70 268.1 322 43.2
Pp3c2_35640 Physcomitrium patens HOM05D003516 ORTHO05D004068 3.8e-68 262.7 268 47.8
Actinidia01964 Actinidia chinensis HOM05D003516 ORTHO05D004068 1.3e-60 237.7 145 78.6
Lsat_1_v5_gn_7_15281 Lactuca sativa HOM05D003516 ORTHO05D004068 2.1e-58 230.3 189 61.4
AagrBONN_evm.TU.Sc2ySwM_344.722 Anthoceros agrestis HOM05D003516 ORTHO05D004068 7.9e-58 228.4 326 39.9
SalBow1G7636 Salvia bowleyana HOM05D003516 ORTHO05D004068 2.8e-55 219.9 159 65.4
SalBow1G7786 Salvia bowleyana HOM05D003516 ORTHO05D004068 8.5e-52 208.4 145 64.8
SMO364G0931 Selaginella moellendorffii HOM05D003516 ORTHO05D004068 1.7e-47 194.1 259 43.6
RcHm_v2.0_Chr4g0415091 Rosa chinensis HOM05D003516 ORTHO05D004068 7.7e-45 185.3 176 60.2
Psat3g198720 Pisum sativum HOM05D003516 ORTHO05D004068 2.2e-44 183.7 274 40.9
CSS0008212 Camellia sinensis var. sinensis HOM05D003516 ORTHO05D004068 8.8e-41 171.8 116 67.2
Solyc02g088510.4 Solanum lycopersicum HOM05D003516 ORTHO05D004068 7.4e-40 168.7 113 73.5
PRCOL_00005991 Prasinoderma coloniale HOM05D003516 ORTHO05D004068 3.7e-39 166.4 332 32.5
Nitab4.5_0000053g0020 Nicotiana tabacum HOM05D003516 ORTHO05D004068 1.4e-38 164.5 97 78.4
Lsat_1_v5_gn_4_58340 Lactuca sativa HOM05D003516 ORTHO05D004068 1.2e-37 161.4 117 68.4
Lj4C115T4 Lonicera japonica HOM05D003516 ORTHO05D004068 1.3e-36 157.9 97 78.4
Psat1g105360 Pisum sativum HOM05D003516 ORTHO05D004068 2.1e-34 150.6 98 75.5
HanXRQChr17g0546741 Helianthus annuus HOM05D003516 ORTHO05D004068 9.4e-27 125.2 97 68.0
RcHm_v2.0_Chr4g0415101 Rosa chinensis HOM05D003516 ORTHO05D004068 4.7e-26 122.9 94 59.6
Psat1g105320 Pisum sativum HOM05D003516 ORTHO05D004068 6.3e-23 112.5 65 80.0
SalBow8G2541 Salvia bowleyana HOM05D003516 ORTHO05D004068 1.1e-22 111.7 206 36.9
SEGI_03289 Sequoiadendron giganteum HOM05D003516 ORTHO05D004068 1.1e-22 111.7 94 52.1
CsaV3_3G041010 Cucumis sativus L. HOM05D003516 ORTHO05D004068 7.0e-22 109.0 94 56.4
Nn4g23325 Nelumbo nucifera HOM05D003516 ORTHO05D004068 2.6e-16 90.5 51 78.4
Lsat_1_v5_gn_4_89441 Lactuca sativa HOM05D003516 ORTHO05D004068 7.5e-16 89.0 60 68.3
AUR62043822 Chenopodium quinoa HOM05D000030 ORTHO05D000009 5.9e-13 79.3 51 74.5
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 2.9e-12 77.0 56 64.3
Lsat_1_v5_gn_3_33981 Lactuca sativa HOM05D003516 ORTHO05D004068 3.7e-07 60.1 33 81.8
SalBow1G3591 Salvia bowleyana HOM05D020262 ORTHO05D004068 3.2e-06 57.0 59 45.8
SalBow8G5577 Salvia bowleyana HOM05D020262 ORTHO05D004068 3.2e-06 57.0 59 45.8
Medtr5g064760 Medicago truncatula HOM05D003516 ORTHO05D004068 9.2e-06 55.5 42 50.0


User provided reference genes

Program Settings