Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g03090 Coffea canephora HOM05D007272 ORTHO05D009305 7.6e-294 1013.1 501 100.0
Hma1.2p1_0449F.1_g155160 Hydrangea macrophylla HOM05D007272 ORTHO05D009305 1.1e-162 577.4 495 61.2
GSVIVG01011351001 Vitis vinifera HOM05D007272 ORTHO05D009305 9.9e-161 570.9 488 61.5
Actinidia23567 Actinidia chinensis HOM05D007272 ORTHO05D009305 2.2e-160 569.7 482 61.2
vmacro05725 Vaccinium macrocarpon HOM05D007272 ORTHO05D009305 3.2e-159 565.8 482 61.2
Potri.017G079100 Populus trichocarpa HOM05D007272 ORTHO05D009305 1.2e-153 547.4 491 58.0
Manes.17G022200 Manihot esculenta HOM05D007272 ORTHO05D009305 7.6e-153 544.7 485 57.5
TAR629G0691 Trochodendron aralioides HOM05D007272 ORTHO05D009305 8.4e-152 541.2 493 57.4
Haze_14576 Corylus avellana HOM05D007272 ORTHO05D009305 4.2e-151 538.9 483 57.3
Cfa007518 Carpinus fangiana HOM05D007272 ORTHO05D009305 2.1e-150 536.6 494 56.7
HanXRQChr14g0449311 Helianthus annuus HOM05D007272 ORTHO05D009305 3.5e-150 535.8 482 58.3
Prupe.3G271100 Prunus persica HOM05D007272 ORTHO05D009305 2.3e-149 533.1 498 55.4
QL02p080768 Quercus lobata HOM05D007272 ORTHO05D009305 5.7e-148 528.5 479 57.4
Ciclev10011541m.g Citrus clementina HOM05D007272 ORTHO05D009305 1.3e-147 527.3 498 57.6
DCAR_021668 Daucus carota HOM05D007272 ORTHO05D009305 3.7e-147 525.8 485 56.5
Sabra17G0070200 Salix brachista HOM05D007272 ORTHO05D009305 2.4e-146 523.1 484 56.4
TWI34G0655 Tripterygium wilfordii HOM05D007272 ORTHO05D009305 3.1e-146 522.7 496 55.8
Sc10g0003770 Simmondsia chinensis HOM05D007272 ORTHO05D009305 6.9e-146 521.5 493 56.4
CiPaw.04G019400 Carya illinoinensis HOM05D007272 ORTHO05D009305 2.0e-145 520.0 490 55.3
Lj7C400T1 Lonicera japonica HOM05D007272 ORTHO05D009305 4.5e-145 518.8 480 58.1
Duzib187G0958 Durio zibethinus HOM05D007272 ORTHO05D009305 5.9e-145 518.5 486 57.0
AUR62031636 Chenopodium quinoa HOM05D007272 ORTHO05D009305 7.7e-145 518.1 481 53.6
Gorai.006G025400 Gossypium raimondii HOM05D007272 ORTHO05D009305 2.9e-144 516.2 497 54.7
PGR142G3376 Punica granatum HOM05D007272 ORTHO05D009305 6.5e-144 515.0 491 56.0
Nn3g17142 Nelumbo nucifera HOM05D007272 ORTHO05D009305 1.4e-143 513.8 485 54.4
MSTRG.3220 Avicennia marina HOM05D007272 ORTHO05D009305 1.9e-143 513.5 500 55.8
Thecc.04G075900 Theobroma cacao HOM05D007272 ORTHO05D009305 1.9e-143 513.5 494 56.1
RhsimUnG0199700 Rhododendron simsii HOM05D007272 ORTHO05D009305 1.2e-142 510.8 560 52.0
Lalb_Chr21g0318941 Lupinus albus HOM05D007272 ORTHO05D009305 2.1e-142 510.0 478 57.1
Nitab4.5_0009739g0030 Nicotiana tabacum HOM05D007272 ORTHO05D009305 2.1e-142 510.0 503 53.1
Cpa.g.sc14.36 Carica papaya HOM05D007272 ORTHO05D009305 8.8e-141 504.6 442 58.8
SalBow1G7111 Salvia bowleyana HOM05D007272 ORTHO05D009305 2.0e-140 503.4 497 55.9
Gohir.A09G022200 Gossypium hirsutum HOM05D007272 ORTHO05D009305 2.5e-140 503.1 503 54.1
Migut.H00895 Erythranthe guttata HOM05D007272 ORTHO05D009305 3.3e-140 502.7 493 57.0
MD17G1048000 Malus domestica HOM05D007272 ORTHO05D009305 2.2e-139 500.0 507 54.0
Lsat_1_v5_gn_2_88701 Lactuca sativa HOM05D007272 ORTHO05D009305 3.7e-139 499.2 481 55.1
Ca_04270_v3 Cicer arietinum L. HOM05D007272 ORTHO05D009305 5.3e-138 495.4 489 54.4
RhsimUnG0056400 Rhododendron simsii HOM05D007272 ORTHO05D009305 2.0e-137 493.4 587 50.8
FvH4_6g49170 Fragaria vesca HOM05D007272 ORTHO05D009305 4.5e-137 492.3 498 54.0
RcHm_v2.0_Chr2g0169041 Rosa chinensis HOM05D007272 ORTHO05D009305 1.0e-136 491.1 494 54.0
FAN14G5197 Fragaria x ananassa HOM05D007272 ORTHO05D009305 3.8e-136 489.2 498 53.8
Phvul.004G026700 Phaseolus vulgaris HOM05D007272 ORTHO05D009305 6.5e-136 488.4 489 52.4
TPR.G4317 Trifolium pratense HOM05D007272 ORTHO05D009305 6.5e-136 488.4 484 53.3
FAN02G2692 Fragaria x ananassa HOM05D001960 ORTHO05D004348 5.5e-135 485.3 498 53.4
Glyma.13G064500 Glycine max HOM05D007272 ORTHO05D009305 7.2e-135 485.0 489 53.6
arahy.Tifrunner.gnm1.ann1.UFNR33 Arachis hypogaea HOM05D007272 ORTHO05D009305 1.6e-134 483.8 500 52.6
FAN05G2713 Fragaria x ananassa HOM05D007272 ORTHO05D009305 3.6e-134 482.6 498 53.2
Ah.10g031300 Amaranthus hybridus HOM05D007272 ORTHO05D009305 7.9e-134 481.5 484 51.4
ECA238G2465 Erigeron canadensis HOM05D007272 ORTHO05D009305 1.1e-132 477.6 479 53.9
Gohir.D09G021400 Gossypium hirsutum HOM05D007272 ORTHO05D009305 2.0e-132 476.9 464 54.7
Psat1g075440 Pisum sativum HOM05D007272 ORTHO05D009305 2.6e-132 476.5 479 53.0
QL02p080779 Quercus lobata HOM05D007272 ORTHO05D009305 7.4e-132 474.9 529 50.7
Hund13235 Selenicereus undatus HOM05D007272 ORTHO05D009305 1.4e-130 470.7 463 52.1
Oeu037173.1 Olea europaea HOM05D007272 ORTHO05D009305 3.1e-130 469.5 491 52.5
Dinv33728 Davidia involucrata HOM05D007272 ORTHO05D009305 1.3e-128 464.2 360 64.7
Sopen02g032460 Solanum pennellii HOM05D007272 ORTHO05D009305 1.7e-128 463.8 491 50.9
Solyc02g087730.3 Solanum lycopersicum HOM05D007272 ORTHO05D009305 3.8e-128 462.6 489 50.9
Lj2g0023599 Lotus japonicus HOM05D007272 ORTHO05D009305 6.5e-128 461.8 491 51.3
Peaxi162Scf00129g00431 Petunia axillaris HOM05D007272 ORTHO05D009305 2.5e-127 459.9 517 50.7
ClCG10G014870 Citrullus lanatus HOM05D007272 ORTHO05D009305 5.5e-127 458.8 486 52.1
SGA_v2.0_scaffold135G34775 Striga asiatica HOM05D007118 ORTHO05D008957 5.2e-125 452.2 494 52.6
THA.LOC104822369 Tarenaya hassleriana HOM05D007272 ORTHO05D009305 5.2e-125 452.2 497 50.7
EL10Ac2g02942 Beta vulgaris HOM05D007272 ORTHO05D009305 8.8e-125 451.4 481 50.3
Lj2g0009951 Lotus japonicus HOM05D007272 ORTHO05D009305 4.5e-121 439.1 477 51.4
arahy.Tifrunner.gnm1.ann1.091QIK Arachis hypogaea HOM05D007272 ORTHO05D009305 1.3e-120 437.6 578 45.8
ATR0706G038 Amborella trichopoda HOM05D007272 ORTHO05D009305 1.5e-119 434.1 497 49.9
FAN09G2990 Fragaria x ananassa HOM05D007272 ORTHO05D009305 1.5e-119 434.1 406 56.4
PSO591G0492 Papaver somniferum HOM05D007272 ORTHO05D009305 1.2e-116 424.5 474 47.9
CANSAT64G0717 Cannabis sativa HOM05D007272 ORTHO05D009305 3.3e-116 422.9 470 50.0
COL.COLO4_25162 Corchorus olitorius HOM05D007118 ORTHO05D008957 3.0e-109 399.8 478 47.7
HPP92_000629 Vanilla planifolia HOM05D007272 ORTHO05D009305 1.5e-108 397.5 486 46.1
Atru.chr8.1898 Acer truncatum HOM05D007272 ORTHO05D009305 2.4e-106 390.2 369 56.9
Gorai.012G056400 Gossypium raimondii HOM05D007272 ORTHO05D009305 1.2e-105 387.9 462 48.9
Gohir.D04G050866 Gossypium hirsutum HOM05D007272 ORTHO05D009305 3.5e-105 386.3 462 48.7
Glyma.19G020400 Glycine max HOM05D007272 ORTHO05D009305 1.1e-103 381.3 344 59.9
Gohir.A05G363800 Gossypium hirsutum HOM05D007272 ORTHO05D009305 6.1e-102 375.6 464 47.2
VMungo0464G0783 Vigna mungo HOM05D007272 ORTHO05D009305 6.1e-102 375.6 404 51.7
Aqoxy3G03290 Aquilegia oxysepala HOM05D007272 ORTHO05D009305 1.0e-101 374.8 397 50.6
PSO832G2300 Papaver somniferum HOM05D007272 ORTHO05D009305 1.4e-101 374.4 434 47.5
Nitab4.5_0000564g0300 Nicotiana tabacum HOM05D007272 ORTHO05D009305 5.7e-100 369.0 565 40.7
Os01g0185400 Oryza sativa ssp. japonica HOM05D007272 ORTHO05D009305 1.8e-93 347.4 487 43.7
Medtr6g011500 Medicago truncatula HOM05D007272 ORTHO05D009305 9.8e-92 341.7 354 52.8
Pp3c15_23310 Physcomitrium patens HOM05D007272 ORTHO05D009305 8.3e-91 338.6 502 41.4
Zm00001eb121640 Zea mays HOM05D007272 ORTHO05D009305 5.4e-90 335.9 488 42.4
MD09G1047900 Malus domestica HOM05D007272 ORTHO05D009305 2.7e-89 333.6 517 40.8
MD17G1048100 Malus domestica HOM05D007272 ORTHO05D009305 1.9e-82 310.8 314 53.2
PGSC0003DMG400001312 Solanum tuberosum HOM05D007272 ORTHO05D009305 4.1e-82 309.7 287 56.4
Mapoly0135s0023 Marchantia polymorpha HOM05D007272 ORTHO05D009305 4.9e-75 286.2 485 39.0
SMO356G0594 Selaginella moellendorffii HOM05D007272 ORTHO05D009305 1.3e-67 261.5 423 38.1
CSS0013465 Camellia sinensis var. sinensis HOM05D007272 ORTHO05D009305 8.4e-59 232.3 218 57.3
CSS0034889 Camellia sinensis var. sinensis HOM05D007272 ORTHO05D009305 4.9e-51 206.5 241 48.5
CDE04G0606 Ceratophyllum demersum HOM05D007272 ORTHO05D009305 5.1e-40 169.9 198 50.5
Duzib147G0842 Durio zibethinus HOM05D007272 ORTHO05D009305 2.0e-36 157.9 166 52.4
AagrBONN_evm.TU.Sc2ySwM_344.2727 Anthoceros agrestis HOM05D007272 ORTHO05D009305 1.3e-30 138.7 177 41.2
Hma1.2p1_2982F.1_g331250 Hydrangea macrophylla HOM05D007272 ORTHO05D009305 2.9e-19 100.9 74 66.2
Hma1.2p1_0449F.1_g155150 Hydrangea macrophylla HOM05D007272 ORTHO05D009305 3.8e-19 100.5 171 39.2
Hma1.2p1_2982F.1_g331245 Hydrangea macrophylla HOM05D007272 ORTHO05D009305 3.8e-19 100.5 171 39.2
ATR0693G009 Amborella trichopoda HOM05D007272 ORTHO05D009305 1.9e-18 98.2 109 51.4
Zm00001eb204740 Zea mays HOM05D007272 ORTHO05D009305 1.2e-17 95.5 137 41.6
CDE04G1434 Ceratophyllum demersum HOM05D007272 ORTHO05D009305 1.8e-16 91.7 118 41.5
SGA_v2.0_scaffold52G19082 Striga asiatica HOM05D007272 ORTHO05D009305 5.1e-16 90.1 153 40.5
VMungo0464G0246 Vigna mungo HOM05D007272 ORTHO05D009305 1.1e-15 89.0 121 39.7
HanXRQChr07g0191831 Helianthus annuus HOM05D007272 ORTHO05D009305 2.0e-15 88.2 73 58.9
SGA_v2.0_scaffold52G19148 Striga asiatica HOM05D007272 ORTHO05D009305 2.6e-15 87.8 124 46.0
Medtr6g011510 Medicago truncatula HOM05D007272 ORTHO05D009305 1.1e-13 82.4 127 36.2
Dinv33460 Davidia involucrata HOM05D007272 ORTHO05D010159 5.3e-13 80.1 51 64.7
MSTRG.9273 Avicennia marina HOM05D003769 ORTHO05D004521 7.2e-10 69.7 241 29.5
SGA_v2.0_scaffold52G19157 Striga asiatica HOM05D016586 ORTHO05D009305 1.6e-09 68.6 62 53.2
Lj5C147T4 Lonicera japonica HOM05D003769 ORTHO05D004521 2.1e-09 68.2 321 28.3
Medtr8g044020 Medicago truncatula HOM05D007272 ORTHO05D009305 1.0e-08 65.9 62 53.2
Zm00001eb160220 Zea mays HOM05D003769 ORTHO05D004521 1.4e-08 65.5 319 27.0
MELO3C030970.2 Cucumis melo HOM05D007272 ORTHO05D009305 1.8e-08 65.1 71 47.9
ECA233G5984 Erigeron canadensis HOM05D003769 ORTHO05D004521 1.8e-08 65.1 277 27.8
Nn4g23791 Nelumbo nucifera HOM05D003769 ORTHO05D004521 3.0e-08 64.3 273 28.2
Pp3c15_21840 Physcomitrium patens HOM05D004386 ORTHO05D005247 6.7e-08 63.2 314 26.4
Os01g0575500 Oryza sativa ssp. japonica HOM05D003769 ORTHO05D004521 8.8e-08 62.8 318 27.0
arahy.Tifrunner.gnm1.ann1.C4VQXX Arachis hypogaea HOM05D001335 ORTHO05D001184 5.7e-07 60.1 181 27.6
Lsat_1_v5_gn_7_26400 Lactuca sativa HOM05D004758 ORTHO05D006063 5.7e-07 60.1 144 30.6
arahy.Tifrunner.gnm1.ann1.DD99A7 Arachis hypogaea HOM05D001335 ORTHO05D001184 7.4e-07 59.7 181 28.2
arahy.Tifrunner.gnm1.ann1.Q95WBF Arachis hypogaea HOM05D001335 ORTHO05D001184 7.4e-07 59.7 181 27.6
arahy.Tifrunner.gnm1.ann1.W4V2BL Arachis hypogaea HOM05D001335 ORTHO05D001184 9.7e-07 59.3 180 28.9
SalBow1G2916 Salvia bowleyana HOM05D003769 ORTHO05D004521 1.7e-06 58.5 252 25.8
Zm00001eb250580 Zea mays HOM05D001335 ORTHO05D001184 1.7e-06 58.5 175 30.9
arahy.Tifrunner.gnm1.ann1.85MML8 Arachis hypogaea HOM05D001335 ORTHO05D001184 2.2e-06 58.2 180 27.8
arahy.Tifrunner.gnm1.ann1.MCR2FH Arachis hypogaea HOM05D001335 ORTHO05D001184 2.2e-06 58.2 181 27.1
HanXRQChr04g0115571 Helianthus annuus HOM05D004758 ORTHO05D006063 2.2e-06 58.2 162 30.2
arahy.Tifrunner.gnm1.ann1.G0UD5H Arachis hypogaea HOM05D001335 ORTHO05D001184 2.8e-06 57.8 180 27.8
arahy.Tifrunner.gnm1.ann1.GQT8P7 Arachis hypogaea HOM05D001335 ORTHO05D001184 2.8e-06 57.8 182 27.5
arahy.Tifrunner.gnm1.ann1.ITY2T4 Arachis hypogaea HOM05D001335 ORTHO05D001184 2.8e-06 57.8 182 27.5
arahy.Tifrunner.gnm1.ann1.Z9IP40 Arachis hypogaea HOM05D001335 ORTHO05D001184 2.8e-06 57.8 180 27.8
arahy.Tifrunner.gnm1.ann1.LEPX0K Arachis hypogaea HOM05D001335 ORTHO05D001184 3.7e-06 57.4 180 27.8
arahy.Tifrunner.gnm1.ann1.WU4XQ7 Arachis hypogaea HOM05D001335 ORTHO05D001184 4.8e-06 57.0 180 27.8
ECA236G2519 Erigeron canadensis HOM05D004758 ORTHO05D006063 6.3e-06 56.6 144 30.6
AUR62001235 Chenopodium quinoa HOM05D000453 ORTHO05D000387 8.2e-06 56.2 162 30.9
HPP92_022912 Vanilla planifolia HOM05D003769 ORTHO05D004521 8.2e-06 56.2 303 25.1


User provided reference genes

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