Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g02980 Coffea canephora HOM05D008415 ORTHO05D010601 3.3e-77 291.6 142 100.0
Cc01_g11390 Coffea canephora HOM05D008415 ORTHO05D010601 1.8e-46 189.5 123 80.5
Oeu059099.1 Olea europaea HOM05D008415 ORTHO05D010601 1.9e-24 116.3 111 52.3
Migut.D02196 Erythranthe guttata HOM05D008415 ORTHO05D010601 4.7e-23 111.7 121 50.4
MSTRG.18650 Avicennia marina HOM05D008415 ORTHO05D010601 2.3e-22 109.4 145 43.4
SalBow3G0300 Salvia bowleyana HOM05D008415 ORTHO05D010601 3.0e-22 109.0 80 62.5
GSVIVG01025161001 Vitis vinifera HOM05D008415 ORTHO05D010601 4.0e-22 108.6 81 63.0
SGA_v2.0_scaffold61G21159 Striga asiatica HOM05D008415 ORTHO05D010601 6.8e-22 107.8 116 44.8
vmacro14451 Vaccinium macrocarpon HOM05D008415 ORTHO05D010601 8.8e-22 107.5 116 48.3
arahy.Tifrunner.gnm1.ann1.C7LIDW Arachis hypogaea HOM05D008415 ORTHO05D010601 1.2e-21 107.1 130 43.8
Eucgr.J00943 Eucalyptus grandis HOM05D008415 ORTHO05D010601 2.0e-21 106.3 112 49.1
Rhsim01G0218700 Rhododendron simsii HOM05D008415 ORTHO05D010601 2.0e-21 106.3 87 60.9
arahy.Tifrunner.gnm1.ann1.TY33PY Arachis hypogaea HOM05D008415 ORTHO05D010601 2.6e-21 105.9 130 43.1
ClCG02G021040 Citrullus lanatus HOM05D008415 ORTHO05D010601 4.4e-21 105.1 81 60.5
CAN.G631.8 Capsicum annuum HOM05D008415 ORTHO05D010601 5.7e-21 104.8 96 53.1
MELO3C025762.2 Cucumis melo HOM05D008415 ORTHO05D010601 9.8e-21 104.0 81 59.3
Dinv32770 Davidia involucrata HOM05D008415 ORTHO05D010601 1.7e-20 103.2 111 47.7
Nitab4.5_0000650g0050 Nicotiana tabacum HOM05D008415 ORTHO05D010601 2.8e-20 102.4 128 45.3
Peaxi162Scf00351g00214 Petunia axillaris HOM05D008415 ORTHO05D010601 2.8e-20 102.4 124 46.8
QL01p023166 Quercus lobata HOM05D008415 ORTHO05D010601 2.8e-20 102.4 123 43.9
PGR119G0199 Punica granatum HOM05D008415 ORTHO05D010601 3.7e-20 102.1 81 56.8
Sed0001336 Sechium edule HOM05D008415 ORTHO05D010601 3.7e-20 102.1 109 49.5
PGSC0003DMG400008064 Solanum tuberosum HOM05D008415 ORTHO05D010601 3.7e-20 102.1 81 59.3
ECA238G2082 Erigeron canadensis HOM05D008415 ORTHO05D010601 6.3e-20 101.3 136 43.4
CsaV3_6G021730 Cucumis sativus L. HOM05D008415 ORTHO05D010601 8.3e-20 100.9 81 58.0
Lsat_1_v5_gn_2_98161 Lactuca sativa HOM05D008415 ORTHO05D010601 1.4e-19 100.1 131 44.3
Solyc11g069210.2 Solanum lycopersicum HOM05D008415 ORTHO05D010601 1.4e-19 100.1 81 58.0
unitig_46.g18232 Utricularia gibba HOM05D008415 ORTHO05D010601 2.4e-19 99.4 107 50.5
Glyma.12G070700 Glycine max HOM05D008415 ORTHO05D010601 5.4e-19 98.2 81 54.3
Sopen11g027940 Solanum pennellii HOM05D008415 ORTHO05D010601 7.0e-19 97.8 81 56.8
Lj3g0013437 Lotus japonicus HOM05D008415 ORTHO05D010601 2.0e-18 96.3 81 55.6
HanXRQChr14g0445691 Helianthus annuus HOM05D008415 ORTHO05D010601 3.5e-18 95.5 91 50.5
Lalb_Chr19g0137361 Lupinus albus HOM05D008415 ORTHO05D010601 1.7e-17 93.2 82 53.7
Hma1.2p1_1931F.1_g307990 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 2.3e-17 92.8 138 40.6
VMungo1127G1728 Vigna mungo HOM05D008415 ORTHO05D010601 2.3e-17 92.8 94 46.8
TAR633G1891 Trochodendron aralioides HOM05D008415 ORTHO05D010601 2.9e-17 92.4 107 43.9
Hma1.2p1_2585F.1_g324920 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 3.8e-17 92.0 138 40.6
CSS0041118 Camellia sinensis var. sinensis HOM05D008415 ORTHO05D010601 8.6e-17 90.9 76 55.3
Ca_19250_v3 Cicer arietinum L. HOM05D008415 ORTHO05D010601 1.5e-16 90.1 78 50.0
Glyma.11G154841 Glycine max HOM05D008415 ORTHO05D010601 1.5e-16 90.1 75 53.3
Phvul.011G073700 Phaseolus vulgaris HOM05D008415 ORTHO05D010601 1.9e-16 89.7 75 52.0
Psat7g223880 Pisum sativum HOM05D008415 ORTHO05D010601 1.9e-16 89.7 80 48.8
Actinidia03741 Actinidia chinensis HOM05D008415 ORTHO05D010601 2.5e-16 89.4 103 45.6
CANSAT54G1687 Cannabis sativa HOM05D008415 ORTHO05D010601 8.0e-15 84.3 105 41.0
Potri.016G129250 Populus trichocarpa HOM05D008415 ORTHO05D010601 2.8e-12 75.9 100 41.0
Aqoxy2G01080 Aquilegia oxysepala HOM05D008415 ORTHO05D010601 3.7e-12 75.5 87 43.7
Medtr4g060050 Medicago truncatula HOM05D008415 ORTHO05D010601 4.1e-11 72.0 61 50.8
SEGI_01090 Sequoiadendron giganteum HOM05D005535 ORTHO05D006753 1.7e-09 66.6 68 45.6
Glyma.05G028700 Glycine max HOM05D005535 ORTHO05D006753 1.5e-08 63.5 87 40.2
Haze_23892 Corylus avellana HOM05D008415 ORTHO05D010601 1.9e-08 63.2 81 44.4
Hma1.2p1_1617F.1_g293810 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 1.9e-08 63.2 98 35.7
Os03g0288900 Oryza sativa ssp. japonica HOM05D008415 ORTHO05D010601 1.9e-08 63.2 61 50.8
Potri.015G063700 Populus trichocarpa HOM05D005535 ORTHO05D006753 1.9e-08 63.2 96 38.5
Glyma.17G098100 Glycine max HOM05D005535 ORTHO05D006753 4.3e-08 62.0 65 46.2
Sopen03g032160 Solanum pennellii HOM05D005535 ORTHO05D006753 4.3e-08 62.0 89 38.2
arahy.Tifrunner.gnm1.ann1.G5WMYY Arachis hypogaea HOM05D005535 ORTHO05D006753 5.6e-08 61.6 107 32.7
Peaxi162Scf00009g00219 Petunia axillaris HOM05D005535 ORTHO05D006753 5.6e-08 61.6 106 34.9
Sabra15G0089300 Salix brachista HOM05D005535 ORTHO05D006753 5.6e-08 61.6 96 37.5
Solyc03g113090.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 5.6e-08 61.6 89 38.2
Lj4g0008602 Lotus japonicus HOM05D005535 ORTHO05D006753 9.5e-08 60.8 87 37.9
EL10Ac5g10956 Beta vulgaris HOM05D005535 ORTHO05D006753 1.6e-07 60.1 88 40.9
Psat4g052400 Pisum sativum HOM05D005535 ORTHO05D006753 1.6e-07 60.1 67 43.3
PGSC0003DMG401018143 Solanum tuberosum HOM05D005535 ORTHO05D006753 2.1e-07 59.7 115 33.9
Glyma.04G173200 Glycine max HOM05D005535 ORTHO05D006753 2.8e-07 59.3 67 43.3
Nitab4.5_0004785g0010 Nicotiana tabacum HOM05D005535 ORTHO05D006753 3.6e-07 58.9 86 37.2
Phvul.003G191800 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 3.6e-07 58.9 63 47.6
CSS0005479 Camellia sinensis var. sinensis HOM05D008415 ORTHO05D010601 4.7e-07 58.5 41 65.9
Eucgr.B00441 Eucalyptus grandis HOM05D005535 ORTHO05D006753 4.7e-07 58.5 104 33.7
Lalb_Chr12g0196771 Lupinus albus HOM05D005535 ORTHO05D006753 4.7e-07 58.5 90 37.8
SalBow5G0107 Salvia bowleyana HOM05D005535 ORTHO05D006753 4.7e-07 58.5 65 43.1
SalBow5G2281 Salvia bowleyana HOM05D005535 ORTHO05D006753 4.7e-07 58.5 65 43.1
Thecc.03G081300 Theobroma cacao HOM05D005535 ORTHO05D006753 4.7e-07 58.5 99 35.4
arahy.Tifrunner.gnm1.ann1.WGP01G Arachis hypogaea HOM05D005535 ORTHO05D006753 6.1e-07 58.2 99 36.4
CiPaw.14G078500 Carya illinoinensis HOM05D008415 ORTHO05D010601 6.1e-07 58.2 41 65.9
VMungo1215G1657 Vigna mungo HOM05D005535 ORTHO05D006753 6.1e-07 58.2 63 46.0
Nn3g17153 Nelumbo nucifera HOM05D005535 ORTHO05D006753 8.0e-07 57.8 93 35.5
Hund09363 Selenicereus undatus HOM05D005535 ORTHO05D006753 8.0e-07 57.8 75 40.0
HPP92_024074 Vanilla planifolia HOM05D005535 ORTHO05D006753 8.0e-07 57.8 75 40.0
FAN08G2745 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.0e-06 57.4 92 40.2
PSO478G1818 Papaver somniferum HOM05D005535 ORTHO05D006753 1.4e-06 57.0 80 38.8
Lj1g0015301 Lotus japonicus HOM05D005535 ORTHO05D006753 1.8e-06 56.6 134 26.9
Nitab4.5_0000785g0140 Nicotiana tabacum HOM05D005535 ORTHO05D006753 1.8e-06 56.6 110 32.7
ECA232G4425 Erigeron canadensis HOM05D005535 ORTHO05D006753 2.3e-06 56.2 94 37.2
PSO017G0680 Papaver somniferum HOM05D005535 ORTHO05D006753 2.3e-06 56.2 80 38.8
AUR62021726 Chenopodium quinoa HOM05D005535 ORTHO05D006753 4.0e-06 55.5 113 32.7
Cpa.g.sc17.224 Carica papaya HOM05D005535 ORTHO05D006753 5.2e-06 55.1 72 33.3
Lalb_Chr13g0303381 Lupinus albus HOM05D005535 ORTHO05D006753 6.8e-06 54.7 88 35.2
Aa31LG11G1090 Aethionema arabicum HOM05D005535 ORTHO05D006753 8.9e-06 54.3 72 38.9
Glyma.06G191000 Glycine max HOM05D005535 ORTHO05D006753 8.9e-06 54.3 74 37.8


User provided reference genes

Program Settings