Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g02800 Coffea canephora HOM05D007214 ORTHO05D008907 7.2e-90 334.3 230 100.0
Sopen02g032170 Solanum pennellii HOM05D007214 ORTHO05D008907 6.4e-30 135.2 225 49.3
Solyc02g087420.3 Solanum lycopersicum HOM05D007214 ORTHO05D008907 1.2e-28 131.0 225 48.4
Nitab4.5_0001239g0030 Nicotiana tabacum HOM05D007214 ORTHO05D008907 5.6e-26 122.1 258 36.4
Nitab4.5_0002265g0100 Nicotiana tabacum HOM05D007214 ORTHO05D008907 2.4e-24 116.7 258 50.4
CiPaw.04G066400 Carya illinoinensis HOM05D007214 ORTHO05D008907 1.7e-22 110.5 223 35.4
CAN.G206.82 Capsicum annuum HOM05D007214 ORTHO05D008907 3.8e-22 109.4 224 53.1
Glyma.04G176300 Glycine max HOM05D007214 ORTHO05D008907 3.8e-22 109.4 220 36.4
CANSAT64G0721 Cannabis sativa HOM05D007214 ORTHO05D008907 1.4e-21 107.5 223 36.8
AUR62018331 Chenopodium quinoa HOM05D007214 ORTHO05D008907 1.4e-21 107.5 220 41.8
Ciclev10012639m.g Citrus clementina HOM05D007214 ORTHO05D008907 4.2e-21 105.9 228 36.0
FAN09G3859 Fragaria x ananassa HOM05D007214 ORTHO05D008907 3.5e-20 102.8 225 35.6
SalBow1G8362 Salvia bowleyana HOM05D007214 ORTHO05D008907 7.8e-20 101.7 226 53.1
Potri.001G350100 Populus trichocarpa HOM05D007214 ORTHO05D008907 3.9e-19 99.4 225 34.2
Potri.017G074100 Populus trichocarpa HOM05D007214 ORTHO05D008907 1.5e-18 97.4 224 32.1
Dinv33685 Davidia involucrata HOM05D007214 ORTHO05D008907 4.3e-18 95.9 229 48.5
FAN02G1556 Fragaria x ananassa HOM05D007214 ORTHO05D008907 2.1e-17 93.6 225 34.7
Nn4g22956 Nelumbo nucifera HOM05D007214 ORTHO05D008907 2.1e-17 93.6 225 47.1
Peaxi162Scf00129g00734 Petunia axillaris HOM05D007214 ORTHO05D008907 2.1e-17 93.6 205 35.6
SGA_v2.0_scaffold135G34803 Striga asiatica HOM05D007214 ORTHO05D008907 2.1e-17 93.6 226 44.7
TWI12G0421 Tripterygium wilfordii HOM05D007214 ORTHO05D008907 2.1e-17 93.6 224 50.9
Lalb_Chr10g0093331 Lupinus albus HOM05D007214 ORTHO05D008907 2.8e-17 93.2 227 33.9
TPR.G30823 Trifolium pratense HOM05D007214 ORTHO05D008907 2.8e-17 93.2 222 34.2
Sabra16G0229500 Salix brachista HOM05D007214 ORTHO05D008907 6.2e-17 92.0 222 33.3
FAN14G2712 Fragaria x ananassa HOM05D007214 ORTHO05D008907 1.1e-16 91.3 225 48.0
LjContig00155g0009682 Lotus japonicus HOM05D007214 ORTHO05D008907 1.1e-16 91.3 222 32.0
Glyma.06G189000 Glycine max HOM05D007214 ORTHO05D008907 2.4e-16 90.1 231 32.9
MD09G1042000 Malus domestica HOM05D007214 ORTHO05D008907 2.4e-16 90.1 224 49.1
Zm00001eb280040 Zea mays HOM05D007214 ORTHO05D008907 5.3e-16 89.0 223 31.8
PSO063G2579 Papaver somniferum HOM05D007214 ORTHO05D008907 6.9e-16 88.6 226 29.6
Phvul.008G153000 Phaseolus vulgaris HOM05D007214 ORTHO05D008907 6.9e-16 88.6 220 33.2
RcHm_v2.0_Chr2g0169771 Rosa chinensis HOM05D007214 ORTHO05D008907 6.9e-16 88.6 225 45.3
RhsimUnG0169100 Rhododendron simsii HOM05D007214 ORTHO05D008907 9.0e-16 88.2 225 48.4
AUR62030556 Chenopodium quinoa HOM05D007214 ORTHO05D008907 2.0e-15 87.0 219 32.0
Migut.H00870 Erythranthe guttata HOM05D007214 ORTHO05D008907 3.4e-15 86.3 224 49.6
arahy.Tifrunner.gnm1.ann1.QRE12D Arachis hypogaea HOM05D007214 ORTHO05D008907 1.3e-14 84.3 227 34.8
QL02p079285 Quercus lobata HOM05D007214 ORTHO05D008907 2.9e-14 83.2 229 48.5
SGA_v2.0_scaffold205G41734 Striga asiatica HOM05D007214 ORTHO05D008907 2.9e-14 83.2 214 52.3
arahy.Tifrunner.gnm1.ann1.X6PLX1 Arachis hypogaea HOM05D007214 ORTHO05D008907 3.8e-14 82.8 227 34.4
Duzib187G0634 Durio zibethinus HOM05D007214 ORTHO05D008907 6.4e-14 82.0 229 38.4
Gorai.001G258300 Gossypium raimondii HOM05D007214 ORTHO05D008907 6.4e-14 82.0 217 47.5
CARHR292610 Cardamine hirsuta HOM05D007214 ORTHO05D008907 8.4e-14 81.6 213 40.4
Medtr7g034275 Medicago truncatula HOM05D007214 ORTHO05D008907 1.1e-13 81.3 231 36.8
Ca_08472_v3 Cicer arietinum L. HOM05D007214 ORTHO05D008907 3.2e-13 79.7 170 33.5
AT3G28370 Arabidopsis thaliana HOM05D007214 ORTHO05D008907 4.2e-13 79.3 212 41.0
AL5G17980 Arabidopsis lyrata HOM05D007214 ORTHO05D008907 2.7e-12 76.6 212 44.3
FvH4_6g49740 Fragaria vesca HOM05D007214 ORTHO05D008907 4.6e-12 75.9 225 47.1
Aqoxy3G00863 Aquilegia oxysepala HOM05D007214 ORTHO05D008907 6.0e-12 75.5 221 31.7
Manes.17G117200 Manihot esculenta HOM05D007214 ORTHO05D008907 1.0e-11 74.7 227 30.0
Oeu060587.1 Olea europaea HOM05D007214 ORTHO05D008907 1.0e-11 74.7 119 40.3
Psat3g038600 Pisum sativum HOM05D007214 ORTHO05D008907 1.0e-11 74.7 142 47.9
CSS0043780 Camellia sinensis var. sinensis HOM05D007214 ORTHO05D008907 1.3e-11 74.3 224 31.2
CSS0027558 Camellia sinensis var. sinensis HOM05D007214 ORTHO05D008907 1.8e-11 73.9 220 35.9
Dinv35004 Davidia involucrata HOM05D007214 ORTHO05D008907 3.0e-11 73.2 197 50.8
TAR629G1667 Trochodendron aralioides HOM05D000068 ORTHO05D000084 3.9e-11 72.8 194 43.3
Prupe.3G275800 Prunus persica HOM05D007214 ORTHO05D008907 5.1e-11 72.4 226 45.1
BcaC06g33744 Brassica carinata HOM05D007214 ORTHO05D008907 8.7e-11 71.6 211 37.4
Gohir.D07G223900 Gossypium hirsutum HOM05D007214 ORTHO05D008907 1.5e-10 70.9 189 48.7
Sp2g17170 Schrenkiella parvula HOM05D007214 ORTHO05D008907 1.9e-10 70.5 215 35.8
HPP92_010494 Vanilla planifolia HOM05D007214 ORTHO05D008907 1.9e-10 70.5 228 30.7
Carub.0005s0686 Capsella rubella HOM05D007214 ORTHO05D008907 2.5e-10 70.1 220 42.3
Cpa.g.sc14.68 Carica papaya HOM05D007214 ORTHO05D008907 2.5e-10 70.1 148 35.8
Gohir.A07G216951 Gossypium hirsutum HOM05D007214 ORTHO05D008907 4.3e-10 69.3 217 44.2
A06p40570 Brassica napus HOM05D007214 ORTHO05D008907 1.6e-09 67.4 231 34.2
A06p40600 Brassica napus HOM05D007214 ORTHO05D008907 1.6e-09 67.4 216 37.0
BraA06t26979Z Brassica rapa HOM05D007214 ORTHO05D008907 1.6e-09 67.4 216 37.0
C07p37400 Brassica napus HOM05D007214 ORTHO05D008907 2.1e-09 67.0 212 37.3
Sc11g0006840 Simmondsia chinensis HOM05D007214 ORTHO05D008907 2.8e-09 66.6 124 34.7
Eucgr.J02159 Eucalyptus grandis HOM05D007214 ORTHO05D008907 3.7e-09 66.2 54 63.0
ECA232G1410 Erigeron canadensis HOM05D007214 ORTHO05D008907 4.8e-09 65.9 230 44.8
DCAR_011179 Daucus carota HOM05D007214 ORTHO05D008907 6.2e-09 65.5 190 30.0
Nitab4.5_0001239g0020 Nicotiana tabacum HOM05D005549 ORTHO05D006771 2.4e-08 63.5 211 32.2
Ah.12g065280 Amaranthus hybridus HOM05D007214 ORTHO05D008907 3.1e-08 63.2 218 29.8
THA.LOC104805424 Tarenaya hassleriana HOM05D007214 ORTHO05D008907 3.1e-08 63.2 226 46.5
MBI15_g38192_MAGBIO Magnolia biondii HOM05D007214 ORTHO05D008907 4.0e-08 62.8 53 60.4
Manes.17G117300 Manihot esculenta HOM05D007214 ORTHO05D008907 9.0e-08 61.6 126 34.9
Thhalv10004882m.g Eutrema salsugineum HOM05D007214 ORTHO05D008907 1.2e-07 61.2 220 45.5
BcaC06g30923 Brassica carinata HOM05D007214 ORTHO05D008907 2.0e-07 60.5 212 44.8
COL.COLO4_36999 Corchorus olitorius HOM05D007214 ORTHO05D008907 2.0e-07 60.5 205 46.8
TAR629G0039 Trochodendron aralioides HOM05D000068 ORTHO05D008907 3.4e-07 59.7 56 57.1
BolC7t44250H Brassica oleracea HOM05D007214 ORTHO05D008907 5.8e-07 58.9 221 36.2
PGSC0003DMG400001300 Solanum tuberosum HOM05D007214 ORTHO05D008907 7.6e-07 58.5 53 60.4
GSVIVG01032574001 Vitis vinifera HOM05D007214 ORTHO05D008907 2.2e-06 57.0 46 63.0
Sabra07G0063000 Salix brachista HOM05D007214 ORTHO05D008907 2.9e-06 56.6 53 56.6
Atru.chr8.2432 Acer truncatum HOM05D007214 ORTHO05D008907 3.8e-06 56.2 115 35.7
Oeu060589.1 Olea europaea HOM05D007214 ORTHO05D008907 4.9e-06 55.8 40 72.5
MSTRG.23970 Avicennia marina HOM05D007214 ORTHO05D008907 6.4e-06 55.5 46 63.0


User provided reference genes

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