Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g02670 Coffea canephora HOM05D002071 ORTHO05D002109 4.2e-69 264.6 137 100.0
Cc07_g21200 Coffea canephora HOM05D002071 ORTHO05D002109 1.2e-31 140.2 174 57.5
Cc03_g02680 Coffea canephora HOM05D002071 ORTHO05D002109 8.0e-20 100.9 60 91.7
Lj3C807T5 Lonicera japonica HOM05D002071 ORTHO05D002109 1.8e-16 89.7 71 69.0
GSVIVG01017843001 Vitis vinifera HOM05D002071 ORTHO05D002109 1.8e-16 89.7 71 66.2
Actinidia23448 Actinidia chinensis HOM05D002071 ORTHO05D002109 2.4e-16 89.4 71 63.4
CSS0036992 Camellia sinensis var. sinensis HOM05D002071 ORTHO05D002109 7.0e-16 87.8 71 66.2
Actinidia40208 Actinidia chinensis HOM05D002071 ORTHO05D002109 2.7e-15 85.9 71 60.6
EL10As18g24163 Beta vulgaris HOM05D002071 ORTHO05D002109 2.7e-15 85.9 73 61.6
Oeu029292.1 Olea europaea HOM05D002071 ORTHO05D002109 2.7e-15 85.9 71 66.2
CANSAT01G2870 Cannabis sativa HOM05D002071 ORTHO05D002109 3.5e-15 85.5 71 63.4
PGSC0003DMG400032104 Solanum tuberosum HOM05D002071 ORTHO05D002109 5.9e-15 84.7 71 63.4
TAR365G0956 Trochodendron aralioides HOM05D002071 ORTHO05D002109 5.9e-15 84.7 71 63.4
MD13G1176600 Malus domestica HOM05D002071 ORTHO05D002109 7.7e-15 84.3 71 62.0
Dinv38345 Davidia involucrata HOM05D002071 ORTHO05D000535 1.0e-14 84.0 71 63.4
Haze_01023 Corylus avellana HOM05D002071 ORTHO05D002109 1.7e-14 83.2 71 60.6
Potri.010G027400 Populus trichocarpa HOM05D002071 ORTHO05D002109 1.7e-14 83.2 71 63.4
VMungo1215G3345 Vigna mungo HOM05D002071 ORTHO05D002109 1.7e-14 83.2 71 60.6
Hma1.2p1_1671F.1_g296690 Hydrangea macrophylla HOM05D002071 ORTHO05D002109 2.2e-14 82.8 71 63.4
RcHm_v2.0_Chr4g0420331 Rosa chinensis HOM05D002071 ORTHO05D002109 2.9e-14 82.4 71 60.6
Sopen01g032330 Solanum pennellii HOM05D002071 ORTHO05D002109 2.9e-14 82.4 71 62.0
TWI73G0831 Tripterygium wilfordii HOM05D002071 ORTHO05D002109 2.9e-14 82.4 70 62.9
Atru.chr4.2712 Acer truncatum HOM05D002071 ORTHO05D002109 3.8e-14 82.0 71 60.6
CiPaw.01G156100 Carya illinoinensis HOM05D002071 ORTHO05D002109 3.8e-14 82.0 71 59.2
Cfa015525 Carpinus fangiana HOM05D002071 ORTHO05D002109 5.0e-14 81.6 71 60.6
Psat4g028600 Pisum sativum HOM05D002071 ORTHO05D002109 8.5e-14 80.9 71 59.2
Solyc01g080510.3 Solanum lycopersicum HOM05D002071 ORTHO05D002109 8.5e-14 80.9 71 60.6
ClCG05G005640 Citrullus lanatus HOM05D002071 ORTHO05D002109 1.5e-13 80.1 70 62.9
Migut.O00659 Erythranthe guttata HOM05D002071 ORTHO05D002109 1.5e-13 80.1 71 60.6
Nn3g21205 Nelumbo nucifera HOM05D002071 ORTHO05D002109 1.5e-13 80.1 70 61.4
Phvul.003G098800 Phaseolus vulgaris HOM05D002071 ORTHO05D002109 1.5e-13 80.1 71 60.6
Psat3g118560 Pisum sativum HOM05D002071 ORTHO05D002109 1.5e-13 80.1 71 59.2
SGA_v2.0_scaffold57G20291 Striga asiatica HOM05D002071 ORTHO05D002109 1.9e-13 79.7 71 59.2
Lsat_1_v5_gn_5_49001 Lactuca sativa HOM05D002071 ORTHO05D002109 2.5e-13 79.3 71 62.0
Rhsim04G0213800 Rhododendron simsii HOM05D002071 ORTHO05D002109 3.2e-13 79.0 71 60.6
Sc25g0004590 Simmondsia chinensis HOM05D002071 ORTHO05D002109 3.2e-13 79.0 71 57.7
FvH4_4g16760 Fragaria vesca HOM05D002071 ORTHO05D002109 4.2e-13 78.6 71 56.3
FAN12G1745 Fragaria x ananassa HOM05D002071 ORTHO05D002109 4.2e-13 78.6 71 56.3
FAN12G3312 Fragaria x ananassa HOM05D002071 ORTHO05D002109 4.2e-13 78.6 71 56.3
FAN22G1652 Fragaria x ananassa HOM05D002071 ORTHO05D002109 4.2e-13 78.6 71 56.3
Prupe.1G145800 Prunus persica HOM05D002071 ORTHO05D002109 5.5e-13 78.2 71 57.7
Glyma.15G100200 Glycine max HOM05D002071 ORTHO05D002109 7.2e-13 77.8 71 54.9
Hund20637 Selenicereus undatus HOM05D002071 ORTHO05D002109 9.4e-13 77.4 71 59.2
MELO3C006591.2 Cucumis melo HOM05D002071 ORTHO05D002109 1.2e-12 77.0 70 60.0
DCAR_030577 Daucus carota HOM05D002071 ORTHO05D002109 1.2e-12 77.0 71 57.7
MBI19_g27934_MAGBIO Magnolia biondii HOM05D002071 ORTHO05D002109 1.2e-12 77.0 70 57.1
TPR.G18018 Trifolium pratense HOM05D002071 ORTHO05D002109 1.2e-12 77.0 71 56.3
CiPaw.02G088700 Carya illinoinensis HOM05D002071 ORTHO05D002109 1.6e-12 76.6 70 54.3
MELO3C021382.2 Cucumis melo HOM05D002071 ORTHO05D002109 1.6e-12 76.6 71 57.7
Manes.03G188800 Manihot esculenta HOM05D002071 ORTHO05D002109 1.6e-12 76.6 71 62.0
Medtr4g118510 Medicago truncatula HOM05D002071 ORTHO05D002109 1.6e-12 76.6 71 57.7
FAN07G0987 Fragaria x ananassa HOM05D002071 ORTHO05D002109 2.1e-12 76.3 70 55.7
FAN17G0280 Fragaria x ananassa HOM05D002071 ORTHO05D002109 2.1e-12 76.3 71 56.3
PSO210G3189 Papaver somniferum HOM05D002071 ORTHO05D002109 2.1e-12 76.3 70 58.6
Lsat_1_v5_gn_6_13861 Lactuca sativa HOM05D002071 ORTHO05D002109 2.7e-12 75.9 71 56.3
Aqoxy5G00578 Aquilegia oxysepala HOM05D002071 ORTHO05D002109 3.6e-12 75.5 70 60.0
Gohir.D10G163700 Gossypium hirsutum HOM05D002071 ORTHO05D002109 3.6e-12 75.5 70 57.1
Gorai.011G182600 Gossypium raimondii HOM05D002071 ORTHO05D002109 3.6e-12 75.5 70 57.1
Ca_13450_v3 Cicer arietinum L. HOM05D002071 ORTHO05D002109 4.7e-12 75.1 71 53.5
Lj4g0027554 Lotus japonicus HOM05D002071 ORTHO05D002109 4.7e-12 75.1 71 56.3
AL7G39970 Arabidopsis lyrata HOM05D002071 ORTHO05D002109 8.0e-12 74.3 71 57.7
ECA233G3284 Erigeron canadensis HOM05D002071 ORTHO05D002109 8.0e-12 74.3 71 56.3
HanXRQChr07g0193901 Helianthus annuus HOM05D002071 ORTHO05D002109 8.0e-12 74.3 71 54.9
TPR.G14957 Trifolium pratense HOM05D002071 ORTHO05D002109 8.0e-12 74.3 71 53.5
Carub.0007s2631 Capsella rubella HOM05D002071 ORTHO05D002109 1.0e-11 73.9 71 57.7
Eucgr.B01217 Eucalyptus grandis HOM05D002071 ORTHO05D002109 1.0e-11 73.9 71 56.3
Phvul.006G159000 Phaseolus vulgaris HOM05D002071 ORTHO05D002109 1.0e-11 73.9 71 52.1
ECA240G1991 Erigeron canadensis HOM05D002071 ORTHO05D002109 1.4e-11 73.6 71 54.9
Medtr2g020820 Medicago truncatula HOM05D002071 ORTHO05D002109 1.4e-11 73.6 71 53.5
arahy.Tifrunner.gnm1.ann1.JYSP1P Arachis hypogaea HOM05D002071 ORTHO05D002109 2.3e-11 72.8 71 56.3
arahy.Tifrunner.gnm1.ann1.LLLD9E Arachis hypogaea HOM05D002071 ORTHO05D002109 2.3e-11 72.8 71 56.3
Sp7g13800 Schrenkiella parvula HOM05D002071 ORTHO05D002109 2.3e-11 72.8 71 57.7
BcaNung00264 Brassica carinata HOM05D002071 ORTHO05D002109 3.0e-11 72.4 71 56.3
Cpa.g.sc16.80 Carica papaya HOM05D002071 ORTHO05D002109 3.0e-11 72.4 71 54.9
Lj6g0025453 Lotus japonicus HOM05D002071 ORTHO05D002109 3.0e-11 72.4 71 49.3
BcaC09g50252 Brassica carinata HOM05D002071 ORTHO05D002109 4.0e-11 72.0 71 54.9
C01p27390 Brassica napus HOM05D002071 ORTHO05D002109 4.0e-11 72.0 71 54.9
BolC1t02679H Brassica oleracea HOM05D002071 ORTHO05D002109 4.0e-11 72.0 71 54.9
CsaV3_3G013990 Cucumis sativus L. HOM05D002071 ORTHO05D002109 4.0e-11 72.0 70 57.1
Duzib151G0113 Durio zibethinus HOM05D002071 ORTHO05D002109 4.0e-11 72.0 70 55.7
A01p22000 Brassica napus HOM05D002071 ORTHO05D002109 5.2e-11 71.6 71 54.9
BraA01t02106Z Brassica rapa HOM05D002071 ORTHO05D002109 5.2e-11 71.6 71 54.9
CARHR222350 Cardamine hirsuta HOM05D002071 ORTHO05D002109 5.2e-11 71.6 71 56.3
Thhalv10027395m.g Eutrema salsugineum HOM05D002071 ORTHO05D002109 5.2e-11 71.6 71 57.7
Lalb_Chr13g0303981 Lupinus albus HOM05D002071 ORTHO05D002109 5.2e-11 71.6 70 52.9
Ca_21570_v3 Cicer arietinum L. HOM05D002071 ORTHO05D002109 6.8e-11 71.2 71 54.9
Gohir.A10G105000 Gossypium hirsutum HOM05D002071 ORTHO05D002109 6.8e-11 71.2 70 55.7
Duzib052G0419 Durio zibethinus HOM05D002071 ORTHO05D002109 8.8e-11 70.9 70 57.1
Peaxi162Scf00095g00221 Petunia axillaris HOM05D002071 ORTHO05D002109 8.8e-11 70.9 74 47.3
CDE02G0968 Ceratophyllum demersum HOM05D002071 ORTHO05D002109 1.2e-10 70.5 70 52.9
HanXRQChr13g0410161 Helianthus annuus HOM05D002071 ORTHO05D002109 1.2e-10 70.5 71 53.5
Eucgr.H03651 Eucalyptus grandis HOM05D002071 ORTHO05D002109 1.5e-10 70.1 70 54.3
VMungo0540G0146 Vigna mungo HOM05D002071 ORTHO05D002109 1.5e-10 70.1 71 50.7
AT4G15545 Arabidopsis thaliana HOM05D002071 ORTHO05D002109 3.4e-10 68.9 71 53.5
arahy.Tifrunner.gnm1.ann1.31BJMD Arachis hypogaea HOM05D002071 ORTHO05D002109 2.2e-09 66.2 72 51.4
CDE08G1129 Ceratophyllum demersum HOM05D002071 ORTHO05D002109 3.7e-09 65.5 70 48.6
PSO832G0302 Papaver somniferum HOM05D002071 ORTHO05D002109 6.3e-09 64.7 72 50.0
Zm00001eb287680 Zea mays HOM05D002071 ORTHO05D002109 4.1e-08 62.0 70 48.6
Zm00001eb349770 Zea mays HOM05D002071 ORTHO05D002109 7.0e-08 61.2 70 45.7
SEGI_20222 Sequoiadendron giganteum HOM05D002071 ORTHO05D002109 9.1e-08 60.8 70 47.1
SEGI_31224 Sequoiadendron giganteum HOM05D002071 ORTHO05D002109 9.1e-08 60.8 70 48.6
Aa31LG9G1900 Aethionema arabicum HOM05D002071 ORTHO05D002109 1.6e-07 60.1 71 45.1
Lalb_Chr15g0087141 Lupinus albus HOM05D002071 ORTHO05D002109 1.6e-07 60.1 71 45.1
SGA_v2.0_scaffold186G40210 Striga asiatica HOM05D005437 ORTHO05D006699 2.0e-07 59.7 72 41.7
Thecc.04G273400 Theobroma cacao HOM05D002071 ORTHO05D002109 3.5e-07 58.9 70 48.6
arahy.Tifrunner.gnm1.ann1.YJ53B6 Arachis hypogaea HOM05D002071 ORTHO05D002109 4.5e-07 58.5 72 45.8
SGA_v2.0_scaffold1110G53845 Striga asiatica HOM05D002071 ORTHO05D002109 4.5e-07 58.5 70 42.9
PSO675G2413 Papaver somniferum HOM05D002071 ORTHO05D002109 5.9e-07 58.2 70 44.3
PSO675G7748 Papaver somniferum HOM05D002071 ORTHO05D002109 7.7e-07 57.8 70 44.3
SGA_v2.0_scaffold7G03596 Striga asiatica HOM05D002071 ORTHO05D002109 1.0e-06 57.4 70 42.9
Cc08_g05720 Coffea canephora HOM05D056523 ORTHO05D153740 1.3e-06 57.0 36 86.1
Sed0022069 Sechium edule HOM05D002071 ORTHO05D002109 1.3e-06 57.0 70 48.6
MSTRG.13072 Avicennia marina HOM05D002071 ORTHO05D002109 1.7e-06 56.6 71 39.4
ClCG06G005600 Citrullus lanatus HOM05D002071 ORTHO05D002109 2.3e-06 56.2 71 46.5
Glyma.15G212200 Glycine max HOM05D002071 ORTHO05D002109 2.3e-06 56.2 71 50.7
Phvul.011G174200 Phaseolus vulgaris HOM05D002071 ORTHO05D002109 2.3e-06 56.2 71 49.3
SGA_v2.0_scaffold239G44048 Striga asiatica HOM05D002071 ORTHO05D002109 2.3e-06 56.2 71 43.7
MSTRG.16107 Avicennia marina HOM05D002071 ORTHO05D002109 2.9e-06 55.8 70 42.9
vmacro08232 Vaccinium macrocarpon HOM05D002071 ORTHO05D002109 2.9e-06 55.8 53 56.6
Migut.M01546 Erythranthe guttata HOM05D002071 ORTHO05D002109 3.8e-06 55.5 70 40.0
Glyma.08G236200 Glycine max HOM05D002071 ORTHO05D002109 3.8e-06 55.5 71 50.7
Lalb_Chr19g0133321 Lupinus albus HOM05D002071 ORTHO05D002109 3.8e-06 55.5 71 45.1
SalBow8G1388 Salvia bowleyana HOM05D002071 ORTHO05D002109 3.8e-06 55.5 70 42.9
Migut.H01684 Erythranthe guttata HOM05D002071 ORTHO05D002109 5.0e-06 55.1 71 46.5
Hma1.2p1_0078F.1_g040950 Hydrangea macrophylla HOM05D002071 ORTHO05D002109 5.0e-06 55.1 54 55.6
TAR629G2653 Trochodendron aralioides HOM05D002071 ORTHO05D002109 5.0e-06 55.1 70 41.4
CiPaw.11G065000 Carya illinoinensis HOM05D002071 ORTHO05D002109 6.6e-06 54.7 71 38.0
Mapoly0179s0016 Marchantia polymorpha HOM05D002071 ORTHO05D002109 6.6e-06 54.7 70 45.7
Cfa019415 Carpinus fangiana HOM05D002071 ORTHO05D002109 8.6e-06 54.3 70 41.4


User provided reference genes

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