Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g02540 Coffea canephora HOM05D005889 ORTHO05D007495 2.6e-91 339.0 206 100.0
SalBow1G5017 Salvia bowleyana HOM05D005889 ORTHO05D007495 6.8e-39 164.9 129 71.3
CSS0022009 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 3.7e-37 159.1 97 86.6
MBI14_g19739_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 4.8e-37 158.7 190 58.9
Sabra16G0230000 Salix brachista HOM05D005889 ORTHO05D007495 4.8e-37 158.7 195 61.0
Rhsim10G0026400 Rhododendron simsii HOM05D005889 ORTHO05D007495 1.8e-36 156.8 134 64.9
Manes.17G118700 Manihot esculenta HOM05D005889 ORTHO05D007495 2.4e-36 156.4 215 55.8
PGSC0003DMG400000508 Solanum tuberosum HOM05D005889 ORTHO05D007495 2.4e-36 156.4 208 51.0
Hma1.2p1_0697F.1_g204970 Hydrangea macrophylla HOM05D005889 ORTHO05D007495 3.1e-36 156.0 198 55.1
MSTRG.15501 Avicennia marina HOM05D005889 ORTHO05D007495 4.1e-36 155.6 202 58.9
Migut.K01361 Erythranthe guttata HOM05D005889 ORTHO05D007495 4.1e-36 155.6 99 83.8
TAR371G1159 Trochodendron aralioides HOM05D005889 ORTHO05D007495 5.4e-36 155.2 189 54.0
Nitab4.5_0001952g0130 Nicotiana tabacum HOM05D005889 ORTHO05D007495 7.0e-36 154.8 203 53.2
Nn4g22882 Nelumbo nucifera HOM05D005889 ORTHO05D007495 1.6e-35 153.7 128 66.4
DCAR_011198 Daucus carota HOM05D005889 ORTHO05D007495 3.5e-35 152.5 181 51.9
Potri.001G350500 Populus trichocarpa HOM05D005889 ORTHO05D007495 3.5e-35 152.5 198 54.5
Actinidia06039 Actinidia chinensis HOM05D005889 ORTHO05D007495 5.9e-35 151.8 131 64.1
Solyc02g087150.3 Solanum lycopersicum HOM05D005889 ORTHO05D007495 5.9e-35 151.8 202 53.0
Sopen02g031900 Solanum pennellii HOM05D005889 ORTHO05D007495 7.7e-35 151.4 203 52.7
Aqoxy3G03079 Aquilegia oxysepala HOM05D005889 ORTHO05D007495 1.3e-34 150.6 139 59.7
Rhsim10G0026900 Rhododendron simsii HOM05D005889 ORTHO05D007495 2.3e-34 149.8 195 50.3
CAN.G206.53 Capsicum annuum HOM05D005889 ORTHO05D007495 2.9e-34 149.4 202 52.5
Manes.15G180360 Manihot esculenta HOM05D005889 ORTHO05D007495 3.8e-34 149.1 184 57.6
QL02p077702 Quercus lobata HOM05D005889 ORTHO05D007495 5.0e-34 148.7 205 51.2
MD17G1039100 Malus domestica HOM05D005889 ORTHO05D007495 6.5e-34 148.3 193 51.3
SGA_v2.0_scaffold205G41723 Striga asiatica HOM05D005889 ORTHO05D007495 1.1e-33 147.5 97 80.4
Lsat_1_v5_gn_2_92760 Lactuca sativa HOM05D005889 ORTHO05D007495 3.3e-33 146.0 197 49.2
Peaxi162Scf00129g00825 Petunia axillaris HOM05D005889 ORTHO05D007495 4.2e-33 145.6 96 80.2
unitig_21.g20501 Utricularia gibba HOM05D005889 ORTHO05D007495 4.2e-33 145.6 138 60.9
Cfa007463 Carpinus fangiana HOM05D001690 ORTHO05D002627 9.5e-33 144.4 182 61.0
CiPaw.03G035200 Carya illinoinensis HOM05D005889 ORTHO05D007495 1.6e-32 143.7 92 83.7
Oeu047335.1 Olea europaea HOM05D005889 ORTHO05D007495 1.6e-32 143.7 198 52.5
CDE01G0491 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 2.1e-32 143.3 128 64.1
Ciclev10012884m.g Citrus clementina HOM05D005889 ORTHO05D007495 4.7e-32 142.1 126 62.7
MBI14_g42400_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 1.0e-31 141.0 221 50.7
Sc20g0002790 Simmondsia chinensis HOM05D005889 ORTHO05D007495 1.0e-31 141.0 95 78.9
CsaV3_3G042070 Cucumis sativus L. HOM05D005889 ORTHO05D007495 1.4e-31 140.6 167 52.7
THA.LOC104821069 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 1.4e-31 140.6 134 61.2
PSO832G3377 Papaver somniferum HOM05D005889 ORTHO05D007495 2.3e-31 139.8 188 51.6
PGR083G2278 Punica granatum HOM05D005889 ORTHO05D007495 2.3e-31 139.8 93 78.5
Ah.16g106950 Amaranthus hybridus HOM05D005889 ORTHO05D007495 4.0e-31 139.0 182 49.5
Sed0023571 Sechium edule HOM05D005889 ORTHO05D007495 4.0e-31 139.0 93 76.3
Thecc.04G004200 Theobroma cacao HOM05D005889 ORTHO05D007495 4.0e-31 139.0 132 73.5
CDE02G1560 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 5.2e-31 138.7 128 62.5
ECA238G1302 Erigeron canadensis HOM05D005889 ORTHO05D007495 5.2e-31 138.7 196 49.5
PSO063G7534 Papaver somniferum HOM05D005889 ORTHO05D007495 6.8e-31 138.3 194 51.0
Prupe.3G279900 Prunus persica HOM05D005889 ORTHO05D007495 6.8e-31 138.3 98 73.5
Atru.chr8.2424 Acer truncatum HOM05D005889 ORTHO05D007495 8.9e-31 137.9 146 60.3
Gohir.D07G225400 Gossypium hirsutum HOM05D005889 ORTHO05D007495 8.9e-31 137.9 135 68.1
Gorai.001G259800 Gossypium raimondii HOM05D005889 ORTHO05D007495 8.9e-31 137.9 135 68.1
A02p02770 Brassica napus HOM05D005889 ORTHO05D007495 1.2e-30 137.5 95 73.7
C03p07840 Brassica napus HOM05D005889 ORTHO05D007495 1.2e-30 137.5 95 74.7
BraA02t05248Z Brassica rapa HOM05D005889 ORTHO05D007495 1.2e-30 137.5 95 73.7
Eucgr.J02175 Eucalyptus grandis HOM05D005889 ORTHO05D007495 1.2e-30 137.5 94 79.8
HanXRQChr14g0448791 Helianthus annuus HOM05D005889 ORTHO05D007495 1.2e-30 137.5 202 47.0
BcaB01g05094 Brassica carinata HOM05D005889 ORTHO05D007495 1.5e-30 137.1 95 73.7
BolC3t13283H Brassica oleracea HOM05D005889 ORTHO05D007495 1.5e-30 137.1 95 73.7
CANSAT64G2621 Cannabis sativa HOM05D005889 ORTHO05D007495 1.5e-30 137.1 192 58.3
Duzib147G1282 Durio zibethinus HOM05D005889 ORTHO05D007495 1.5e-30 137.1 95 75.8
RcHm_v2.0_Chr2g0170581 Rosa chinensis HOM05D005889 ORTHO05D007495 1.5e-30 137.1 138 60.9
AUR62032095 Chenopodium quinoa HOM05D005889 ORTHO05D007495 2.0e-30 136.7 132 60.6
AT5G14910 Arabidopsis thaliana HOM05D005889 ORTHO05D007495 2.6e-30 136.3 95 73.7
A03p06840 Brassica napus HOM05D005889 ORTHO05D007495 2.6e-30 136.3 94 75.5
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 2.6e-30 136.3 97 72.2
Glyma.13G070100 Glycine max HOM05D005889 ORTHO05D007495 2.6e-30 136.3 92 79.3
Lj7C409T13 Lonicera japonica HOM05D005889 ORTHO05D007495 2.6e-30 136.3 140 59.3
MELO3C009927.2 Cucumis melo HOM05D005889 ORTHO05D007495 3.4e-30 136.0 185 49.7
Thhalv10014795m.g Eutrema salsugineum HOM05D005889 ORTHO05D007495 5.7e-30 135.2 95 73.7
arahy.Tifrunner.gnm1.ann1.LQS8H1 Arachis hypogaea HOM05D005889 ORTHO05D007495 7.5e-30 134.8 91 80.2
arahy.Tifrunner.gnm1.ann1.XH0R3V Arachis hypogaea HOM05D005889 ORTHO05D007495 7.5e-30 134.8 91 80.2
BraA03t10009Z Brassica rapa HOM05D005889 ORTHO05D007495 7.5e-30 134.8 93 75.3
CSS0046645 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 7.5e-30 134.8 196 51.0
FvH4_6g50270 Fragaria vesca HOM05D005889 ORTHO05D007495 7.5e-30 134.8 98 71.4
FAN14G2248 Fragaria x ananassa HOM05D005889 ORTHO05D007495 7.5e-30 134.8 98 71.4
GSVIVG01032527001 Vitis vinifera HOM05D005889 ORTHO05D007495 9.8e-30 134.4 81 87.7
CSS0028338 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 1.3e-29 134.0 196 50.5
BcaNung03088 Brassica carinata HOM05D005889 ORTHO05D007495 1.7e-29 133.7 93 74.2
CANSAT64G0610 Cannabis sativa HOM05D005889 ORTHO05D007495 1.7e-29 133.7 192 53.6
Phvul.004G019800 Phaseolus vulgaris HOM05D005889 ORTHO05D007495 1.7e-29 133.7 196 50.0
Sed0001958 Sechium edule HOM05D005889 ORTHO05D007495 1.7e-29 133.7 134 55.2
BcaNung05888 Brassica carinata HOM05D005889 ORTHO05D007495 3.7e-29 132.5 92 73.9
C02p07380 Brassica napus HOM05D005889 ORTHO05D007495 3.7e-29 132.5 92 73.9
BolC2t06669H Brassica oleracea HOM05D005889 ORTHO05D007495 3.7e-29 132.5 92 73.9
vmacro05795 Vaccinium macrocarpon HOM05D005889 ORTHO05D007495 3.7e-29 132.5 222 44.6
THA.LOC104822380 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 4.9e-29 132.1 92 76.1
Glyma.19G012900 Glycine max HOM05D005889 ORTHO05D007495 6.3e-29 131.7 92 76.1
Medtr6g007887 Medicago truncatula HOM05D005889 ORTHO05D007495 8.3e-29 131.3 198 52.0
VMungo0464G2061 Vigna mungo HOM05D001690 ORTHO05D002627 8.3e-29 131.3 94 75.5
HanXRQChr12g0385561 Helianthus annuus HOM05D005889 ORTHO05D007495 1.1e-28 131.0 197 52.8
TWI12G0403 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 1.4e-28 130.6 150 61.3
TWI56G0856 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 1.4e-28 130.6 187 50.3
Carub.0006s1306 Capsella rubella HOM05D005889 ORTHO05D007495 1.8e-28 130.2 197 46.2
FAN09G4317 Fragaria x ananassa HOM05D005889 ORTHO05D007495 2.4e-28 129.8 143 55.2
FAN02G1209 Fragaria x ananassa HOM05D005889 ORTHO05D007495 4.1e-28 129.0 143 55.2
Hund20036 Selenicereus undatus HOM05D005889 ORTHO05D007495 4.1e-28 129.0 140 55.0
FAN05G0142 Fragaria x ananassa HOM05D005889 ORTHO05D007495 5.4e-28 128.6 143 54.5
CARHR198430 Cardamine hirsuta HOM05D005889 ORTHO05D007495 7.0e-28 128.3 197 45.2
Sp6g29140 Schrenkiella parvula HOM05D005889 ORTHO05D007495 1.2e-27 127.5 87 74.7
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 2.7e-27 126.3 190 54.2
Ca_04220_v3 Cicer arietinum L. HOM05D005889 ORTHO05D007495 3.5e-27 125.9 92 71.7
Lj2g0018244 Lotus japonicus HOM05D005889 ORTHO05D007495 7.8e-27 124.8 179 46.9
Nitab4.5_0005206g0020 Nicotiana tabacum HOM05D005889 ORTHO05D007495 1.7e-26 123.6 80 81.2
ClCG10G014500 Citrullus lanatus HOM05D005889 ORTHO05D007495 2.3e-26 123.2 93 69.9
Psat1g080040 Pisum sativum HOM05D005889 ORTHO05D007495 6.6e-26 121.7 203 47.8
EL10Ac2g03378 Beta vulgaris HOM05D005889 ORTHO05D007495 6.8e-23 111.7 77 74.0
Aa31LG11G14590 Aethionema arabicum HOM05D005889 ORTHO05D007495 8.9e-23 111.3 238 38.2
ATR0787G083 Amborella trichopoda HOM05D005889 ORTHO05D007495 7.5e-22 108.2 73 76.7
Os05g0337400 Oryza sativa ssp. japonica HOM05D005889 ORTHO05D007495 9.8e-22 107.8 83 69.9
Peaxi162Scf00700g00623 Petunia axillaris HOM05D005889 ORTHO05D007495 1.3e-21 107.5 72 79.2
BcaB01g05020 Brassica carinata HOM05D005889 ORTHO05D007495 2.2e-21 106.7 78 70.5
Zm00001eb286710 Zea mays HOM05D005889 ORTHO05D007495 3.7e-21 105.9 86 66.3
Pp3c10_16560 Physcomitrium patens HOM05D005889 ORTHO05D007495 2.4e-20 103.2 86 60.5
Lalb_Chr21g0319321 Lupinus albus HOM05D000340 ORTHO05D000821 2.7e-19 99.8 78 65.4
Pp3c2_14600 Physcomitrium patens HOM05D005889 ORTHO05D007495 2.7e-19 99.8 84 59.5
Pp3c1_25290 Physcomitrium patens HOM05D005889 ORTHO05D007495 6.6e-18 95.1 86 59.3
Rhsim10G0027100 Rhododendron simsii HOM05D005889 ORTHO05D007495 1.9e-17 93.6 58 84.5
Mapoly0034s0091 Marchantia polymorpha HOM05D005889 ORTHO05D007495 3.3e-17 92.8 97 54.6
CSS0042844 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 1.3e-13 80.9 63 73.0
AL6G25690 Arabidopsis lyrata HOM05D005889 ORTHO05D007495 4.9e-13 79.0 76 57.9
SMO119G0369 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 2.4e-12 76.6 82 43.9
SEGI_28638 Sequoiadendron giganteum HOM05D005889 ORTHO05D007495 2.4e-12 76.6 94 48.9
Dinv35030 Davidia involucrata HOM05D005889 ORTHO05D007495 5.4e-12 75.5 144 41.7
Gohir.A07G218300 Gossypium hirsutum HOM05D005889 ORTHO05D007495 2.0e-11 73.6 55 70.9
RcHm_v2.0_Chr2g0170541 Rosa chinensis HOM05D005889 ORTHO05D007495 6.0e-11 72.0 58 69.0
HPP92_014818 Vanilla planifolia HOM05D005889 ORTHO05D007495 1.0e-10 71.2 146 43.2
Cpa.g.sc286.7 Carica papaya HOM05D005889 ORTHO05D007495 2.5e-09 66.6 141 38.3
Nn3g16976 Nelumbo nucifera HOM05D005889 ORTHO05D007495 4.3e-09 65.9 147 40.1
TAR629G0556 Trochodendron aralioides HOM05D001690 ORTHO05D009096 4.7e-08 62.4 39 76.9
TPR.G132 Trifolium pratense HOM05D005889 ORTHO05D007495 6.2e-08 62.0 41 75.6
SMO163G0046 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 1.8e-07 60.5 82 37.8


User provided reference genes

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