Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g02290 Coffea canephora HOM05D007293 ORTHO05D009143 9.2e-60 233.4 123 100.0
Dinv35058 Davidia involucrata HOM05D007293 ORTHO05D009143 7.4e-25 117.5 110 62.7
Migut.H00123 Erythranthe guttata HOM05D007293 ORTHO05D009143 1.6e-24 116.3 101 67.3
MSTRG.24016 Avicennia marina HOM05D007293 ORTHO05D009143 2.4e-23 112.5 100 65.0
CSS0045153 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 1.2e-22 110.2 102 63.7
Dinv33495 Davidia involucrata HOM05D007293 ORTHO05D009143 2.6e-22 109.0 105 62.9
Oeu062917.1 Olea europaea HOM05D007293 ORTHO05D009143 1.0e-21 107.1 109 58.7
CSS0040497 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 1.4e-20 103.2 102 59.8
vmacro05819 Vaccinium macrocarpon HOM05D007293 ORTHO05D009143 2.5e-20 102.4 104 59.6
Rhsim10G0022800 Rhododendron simsii HOM05D007293 ORTHO05D009143 4.2e-20 101.7 104 58.7
CSS0016211 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 1.6e-19 99.8 107 56.1
Migut.K01369 Erythranthe guttata HOM05D007293 ORTHO05D009143 2.7e-19 99.0 102 63.7
CSS0015603 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 6.1e-19 97.8 105 55.2
Lj7A591G78 Lonicera japonica HOM05D007293 ORTHO05D009143 7.9e-19 97.4 103 61.2
CSS0049977 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 3.9e-18 95.1 99 56.6
CSS0001505 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 6.7e-18 94.4 104 57.7
Hma1.2p1_0802F.1_g220360 Hydrangea macrophylla HOM05D007293 ORTHO05D009143 2.8e-16 89.0 104 64.4
GSVIVG01032483001 Vitis vinifera HOM05D007293 ORTHO05D009143 1.8e-15 86.3 105 54.3
SalBow1G2453 Salvia bowleyana HOM05D005882 ORTHO05D009143 1.5e-14 83.2 117 50.4
Atru.chr11.2025 Acer truncatum HOM05D007293 ORTHO05D009143 1.4e-12 76.6 105 54.3
TWI75G0451 Tripterygium wilfordii HOM05D007293 ORTHO05D009143 3.2e-12 75.5 104 50.0
MD16G1092500 Malus domestica HOM05D007293 ORTHO05D009143 7.2e-12 74.3 101 52.5
Actinidia06026 Actinidia chinensis HOM05D007293 ORTHO05D009143 1.6e-11 73.2 77 59.7
Ciclev10033010m.g Citrus clementina HOM05D007293 ORTHO05D009143 1.6e-11 73.2 105 50.5
MD13G1091900 Malus domestica HOM05D007293 ORTHO05D009143 2.1e-11 72.8 101 50.5
DCAR_011205 Daucus carota HOM05D007293 ORTHO05D009143 2.7e-11 72.4 104 51.0
Prupe.1G253900 Prunus persica HOM05D007293 ORTHO05D009143 2.7e-11 72.4 101 51.5
EL10Ac6g13673 Beta vulgaris HOM05D007293 ORTHO05D009143 1.4e-10 70.1 105 49.5
TAR622G0242 Trochodendron aralioides HOM05D007293 ORTHO05D009143 1.4e-10 70.1 104 49.0
FAN17G1887 Fragaria x ananassa HOM05D007293 ORTHO05D009143 1.8e-10 69.7 100 47.0
FAN22G1529 Fragaria x ananassa HOM05D007293 ORTHO05D009143 1.8e-10 69.7 100 47.0
THA.LOC104808972 Tarenaya hassleriana HOM05D007293 ORTHO05D009143 3.9e-10 68.6 103 50.5
AUR62014041 Chenopodium quinoa HOM05D007293 ORTHO05D009143 5.1e-10 68.2 109 46.8
RcHm_v2.0_Chr4g0443841 Rosa chinensis HOM05D007293 ORTHO05D009143 5.1e-10 68.2 100 44.0
ECA246G2262 Erigeron canadensis HOM05D007293 ORTHO05D009143 8.8e-10 67.4 50 74.0
CANSAT01G1482 Cannabis sativa HOM05D007293 ORTHO05D009143 1.1e-09 67.0 100 47.0
COL.COLO4_36768 Corchorus olitorius HOM05D007293 ORTHO05D009143 1.5e-09 66.6 121 47.1
Gohir.A03G139900 Gossypium hirsutum HOM05D007293 ORTHO05D009143 2.0e-09 66.2 104 49.0
Psat2g106240 Pisum sativum HOM05D007293 ORTHO05D009143 2.0e-09 66.2 101 47.5
FvH4_4g34460 Fragaria vesca HOM05D007293 ORTHO05D009143 2.6e-09 65.9 100 45.0
FAN12G1260 Fragaria x ananassa HOM05D007293 ORTHO05D009143 2.6e-09 65.9 101 45.5
Thecc.02G249100 Theobroma cacao HOM05D007293 ORTHO05D009143 3.3e-09 65.5 104 49.0
arahy.Tifrunner.gnm1.ann1.F37JRW Arachis hypogaea HOM05D007293 ORTHO05D009143 4.4e-09 65.1 117 45.3
arahy.Tifrunner.gnm1.ann1.HDCN36 Arachis hypogaea HOM05D007293 ORTHO05D009143 4.4e-09 65.1 117 45.3
PGR119G0124 Punica granatum HOM05D007293 ORTHO05D009143 4.4e-09 65.1 103 47.6
C06p36130 Brassica napus HOM05D007293 ORTHO05D009143 5.7e-09 64.7 107 43.9
CiPaw.05G150900 Carya illinoinensis HOM05D007293 ORTHO05D009143 5.7e-09 64.7 101 49.5
BolC6t38732H Brassica oleracea HOM05D007293 ORTHO05D009143 7.4e-09 64.3 107 43.9
Carub.0002s1704 Capsella rubella HOM05D007293 ORTHO05D009143 7.4e-09 64.3 102 50.0
Duzib251G0045 Durio zibethinus HOM05D007293 ORTHO05D009143 7.4e-09 64.3 102 43.1
Thhalv10019350m.g Eutrema salsugineum HOM05D007293 ORTHO05D009143 7.4e-09 64.3 105 47.6
PSO063G5020 Papaver somniferum HOM05D007293 ORTHO05D009143 7.4e-09 64.3 100 48.0
RcHm_v2.0_Chr4g0443851 Rosa chinensis HOM05D007293 ORTHO05D009143 7.4e-09 64.3 100 44.0
Haze_12178 Corylus avellana HOM05D007293 ORTHO05D009143 1.3e-08 63.5 107 43.9
Sp5g25470 Schrenkiella parvula HOM05D007293 ORTHO05D009143 1.3e-08 63.5 102 49.0
CARHR063530 Cardamine hirsuta HOM05D007293 ORTHO05D009143 1.7e-08 63.2 106 47.2
Psat0s2875g0160 Pisum sativum HOM05D007293 ORTHO05D009143 1.7e-08 63.2 101 46.5
THA.LOC104822141 Tarenaya hassleriana HOM05D007293 ORTHO05D009143 1.7e-08 63.2 100 47.0
Eucgr.H02610 Eucalyptus grandis HOM05D007293 ORTHO05D009143 2.2e-08 62.8 108 42.6
Lj2g0011400 Lotus japonicus HOM05D007293 ORTHO05D009143 2.2e-08 62.8 104 45.2
Prupe.5G015600 Prunus persica HOM05D007293 ORTHO05D009143 2.2e-08 62.8 100 47.0
AL2G29660 Arabidopsis lyrata HOM05D007293 ORTHO05D009143 2.8e-08 62.4 105 47.6
BcaC08g45820 Brassica carinata HOM05D007293 ORTHO05D009143 2.8e-08 62.4 100 45.0
Cfa009144 Carpinus fangiana HOM05D007293 ORTHO05D009143 2.8e-08 62.4 101 47.5
Duzib268G1575 Durio zibethinus HOM05D007293 ORTHO05D009143 2.8e-08 62.4 104 45.2
Aqoxy3G02974 Aquilegia oxysepala HOM05D007293 ORTHO05D009143 3.7e-08 62.0 102 49.0
AT1G70350 Arabidopsis thaliana HOM05D007293 ORTHO05D009143 3.7e-08 62.0 105 47.6
A02p16490 Brassica napus HOM05D007293 ORTHO05D009143 3.7e-08 62.0 106 46.2
BraA02t06707Z Brassica rapa HOM05D007293 ORTHO05D009143 3.7e-08 62.0 106 46.2
Gohir.D02G162700 Gossypium hirsutum HOM05D007293 ORTHO05D009143 3.7e-08 62.0 104 46.2
Gorai.005G182700 Gossypium raimondii HOM05D007293 ORTHO05D009143 3.7e-08 62.0 104 46.2
Lalb_Chr09g0326381 Lupinus albus HOM05D007293 ORTHO05D009143 3.7e-08 62.0 101 44.6
Sc04g0009130 Simmondsia chinensis HOM05D007293 ORTHO05D009143 3.7e-08 62.0 104 43.3
Nn3g16892 Nelumbo nucifera HOM05D007293 ORTHO05D009143 4.8e-08 61.6 41 73.2
AUR62005378 Chenopodium quinoa HOM05D007293 ORTHO05D009143 6.3e-08 61.2 113 39.8
ClCG08G018060 Citrullus lanatus HOM05D007293 ORTHO05D009143 6.3e-08 61.2 104 45.2
HanXRQChr08g0220621 Helianthus annuus HOM05D007293 ORTHO05D009143 8.2e-08 60.8 100 45.0
Lsat_1_v5_gn_4_182280 Lactuca sativa HOM05D007293 ORTHO05D009143 8.2e-08 60.8 100 45.0
BcaC03g15179 Brassica carinata HOM05D007293 ORTHO05D009143 1.4e-07 60.1 106 44.3
C02p27590 Brassica napus HOM05D007293 ORTHO05D009143 1.4e-07 60.1 106 44.3
COL.COLO4_37166 Corchorus olitorius HOM05D006762 ORTHO05D003505 2.4e-07 59.3 102 42.2
CsaV3_4G037870 Cucumis sativus L. HOM05D001719 ORTHO05D008883 4.1e-07 58.5 105 45.7
MBI10_g11075_MAGBIO Magnolia biondii HOM05D007293 ORTHO05D009143 5.3e-07 58.2 61 59.0
Manes.13G030700 Manihot esculenta HOM05D007293 ORTHO05D009143 5.3e-07 58.2 115 44.3
PSO339G0117 Papaver somniferum HOM05D007293 ORTHO05D009143 5.3e-07 58.2 102 44.1
PSO832G1108 Papaver somniferum HOM05D007293 ORTHO05D009143 7.0e-07 57.8 100 47.0
BcaB03g15542 Brassica carinata HOM05D007293 ORTHO05D009143 9.1e-07 57.4 103 46.6
BolC2t08814H Brassica oleracea HOM05D007293 ORTHO05D009143 9.1e-07 57.4 103 43.7
BcaB05g24561 Brassica carinata HOM05D007293 ORTHO05D009143 2.0e-06 56.2 102 46.1
Phvul.002G071600 Phaseolus vulgaris HOM05D007293 ORTHO05D009143 2.6e-06 55.8 101 41.6
A07p31100 Brassica napus HOM05D007293 ORTHO05D009143 3.4e-06 55.5 103 43.7
BraA07t30744Z Brassica rapa HOM05D007293 ORTHO05D009143 3.4e-06 55.5 103 43.7
Glyma.02G034600 Glycine max HOM05D007293 ORTHO05D009143 5.9e-06 54.7 101 42.6
QL03p061237 Quercus lobata HOM05D007293 ORTHO05D009143 5.9e-06 54.7 107 43.0
Hund05995 Selenicereus undatus HOM05D007293 ORTHO05D009143 5.9e-06 54.7 107 43.0


User provided reference genes

Program Settings