Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g02120 Coffea canephora HOM05D006084 ORTHO05D007449 3.9e-66 254.6 125 100.0
Hma1.2p1_0846F.1_g227700 Hydrangea macrophylla HOM05D006084 ORTHO05D007449 4.8e-48 194.5 125 72.8
Dinv33481 Davidia involucrata HOM05D006084 ORTHO05D007449 1.1e-47 193.4 122 75.4
TAR371G1194 Trochodendron aralioides HOM05D006084 ORTHO05D007449 1.8e-47 192.6 125 73.6
CAN.G206.22 Capsicum annuum HOM05D006084 ORTHO05D007449 9.1e-47 190.3 118 73.7
Rhsim08G0053800 Rhododendron simsii HOM05D006084 ORTHO05D007449 1.6e-46 189.5 125 72.8
Cfa007418 Carpinus fangiana HOM05D006084 ORTHO05D007449 3.5e-46 188.3 125 72.0
Actinidia35746 Actinidia chinensis HOM05D006084 ORTHO05D007449 7.7e-46 187.2 122 73.8
Haze_14684 Corylus avellana HOM05D006084 ORTHO05D007449 1.0e-45 186.8 124 71.8
Prupe.3G286100 Prunus persica HOM05D006084 ORTHO05D007449 1.3e-45 186.4 118 75.4
CSS0000489 Camellia sinensis var. sinensis HOM05D006084 ORTHO05D007449 1.7e-45 186.0 125 72.0
CSS0035017 Camellia sinensis var. sinensis HOM05D006084 ORTHO05D007449 1.7e-45 186.0 125 72.0
PGSC0003DMG400000490 Solanum tuberosum HOM05D006084 ORTHO05D007449 2.9e-45 185.3 117 72.6
QL02p076043 Quercus lobata HOM05D006084 ORTHO05D007449 8.5e-45 183.7 124 68.5
QL02p076078 Quercus lobata HOM05D006084 ORTHO05D007449 8.5e-45 183.7 124 68.5
Aqoxy3G02941 Aquilegia oxysepala HOM05D006084 ORTHO05D007449 2.5e-44 182.2 122 71.3
Sopen02g031550 Solanum pennellii HOM05D006084 ORTHO05D007449 2.5e-44 182.2 117 72.6
Atru.chr6.2220 Acer truncatum HOM05D006084 ORTHO05D007449 9.4e-44 180.3 118 73.7
Eucgr.I01785 Eucalyptus grandis HOM05D006084 ORTHO05D007449 9.4e-44 180.3 125 69.6
ATR0730G058 Amborella trichopoda HOM05D006084 ORTHO05D007449 1.6e-43 179.5 125 70.4
Manes.17G116000 Manihot esculenta HOM05D006084 ORTHO05D007449 1.6e-43 179.5 125 71.2
MSTRG.3166 Avicennia marina HOM05D006084 ORTHO05D007449 2.1e-43 179.1 119 70.6
Ca_16579_v3 Cicer arietinum L. HOM05D006084 ORTHO05D007449 2.1e-43 179.1 120 73.3
CiPaw.03G039200 Carya illinoinensis HOM05D006084 ORTHO05D007449 2.7e-43 178.7 125 69.6
CDE08G0643 Ceratophyllum demersum HOM05D006084 ORTHO05D007449 2.7e-43 178.7 125 68.8
MD17G1033600 Malus domestica HOM05D006084 ORTHO05D007449 2.7e-43 178.7 118 72.0
Potri.001G349500 Populus trichocarpa HOM05D006084 ORTHO05D007449 4.7e-43 177.9 125 68.0
HanXRQChr07g0198791 Helianthus annuus HOM05D006084 ORTHO05D007449 6.1e-43 177.6 124 69.4
Lalb_Chr10g0093921 Lupinus albus HOM05D006084 ORTHO05D007449 8.0e-43 177.2 122 71.3
CANSAT64G0964 Cannabis sativa HOM05D006084 ORTHO05D007449 1.0e-42 176.8 122 68.9
Medtr3g088470 Medicago truncatula HOM05D006084 ORTHO05D007449 1.0e-42 176.8 120 71.7
Hund02345 Selenicereus undatus HOM05D006084 ORTHO05D007449 1.4e-42 176.4 125 67.2
Gohir.A07G221200 Gossypium hirsutum HOM05D006084 ORTHO05D007449 3.0e-42 175.3 118 71.2
TPR.G13476 Trifolium pratense HOM05D006084 ORTHO05D007449 3.0e-42 175.3 122 68.9
Glyma.04G247000 Glycine max HOM05D006084 ORTHO05D007449 6.8e-42 174.1 118 71.2
HanXRQChr14g0450361 Helianthus annuus HOM05D006084 ORTHO05D007449 6.8e-42 174.1 124 67.7
Phvul.009G127800 Phaseolus vulgaris HOM05D006084 ORTHO05D007449 6.8e-42 174.1 118 71.2
Thecc.04G011100 Theobroma cacao HOM05D006084 ORTHO05D007449 6.8e-42 174.1 120 70.8
Migut.H00108 Erythranthe guttata HOM05D006084 ORTHO05D007449 8.8e-42 173.7 118 70.3
PGR142G2538 Punica granatum HOM05D006084 ORTHO05D007449 8.8e-42 173.7 116 70.7
Glyma.06G115700 Glycine max HOM05D006084 ORTHO05D007449 1.2e-41 173.3 124 67.7
RcHm_v2.0_Chr2g0172221 Rosa chinensis HOM05D006084 ORTHO05D007449 2.6e-41 172.2 118 69.5
ATR1096G027 Amborella trichopoda HOM05D006084 ORTHO05D007449 3.4e-41 171.8 124 66.9
arahy.Tifrunner.gnm1.ann1.DMWP0X Arachis hypogaea HOM05D006084 ORTHO05D007449 3.4e-41 171.8 120 73.3
arahy.Tifrunner.gnm1.ann1.2LS7ZQ Arachis hypogaea HOM05D006084 ORTHO05D007449 4.4e-41 171.4 120 73.3
A02p02680 Brassica napus HOM05D006084 ORTHO05D007449 4.4e-41 171.4 118 71.2
BraA02t05237Z Brassica rapa HOM05D006084 ORTHO05D007449 4.4e-41 171.4 118 71.2
Gohir.D07G227900 Gossypium hirsutum HOM05D006084 ORTHO05D007449 4.4e-41 171.4 118 71.2
THA.LOC104821076 Tarenaya hassleriana HOM05D006084 ORTHO05D007449 4.4e-41 171.4 125 67.2
ECA238G3069 Erigeron canadensis HOM05D006084 ORTHO05D007449 7.5e-41 170.6 124 68.5
Oeu004718.1 Olea europaea HOM05D006084 ORTHO05D007449 1.3e-40 169.9 118 71.2
arahy.Tifrunner.gnm1.ann1.48HX9C Arachis hypogaea HOM05D006084 ORTHO05D007449 1.7e-40 169.5 120 72.5
BraA03t10005Z Brassica rapa HOM05D006084 ORTHO05D007449 1.7e-40 169.5 118 69.5
COL.COLO4_28991 Corchorus olitorius HOM05D006084 ORTHO05D007449 1.7e-40 169.5 135 65.2
Sp6g29330 Schrenkiella parvula HOM05D006084 ORTHO05D007449 1.7e-40 169.5 118 70.3
BcaNung03101 Brassica carinata HOM05D006084 ORTHO05D007449 2.2e-40 169.1 118 70.3
A03p06720 Brassica napus HOM05D006084 ORTHO05D007449 2.2e-40 169.1 118 69.5
CsaV3_5G027340 Cucumis sativus L. HOM05D006084 ORTHO05D007449 2.2e-40 169.1 125 64.8
Lj1g0023236 Lotus japonicus HOM05D006084 ORTHO05D007449 2.2e-40 169.1 122 67.2
Sed0018290 Sechium edule HOM05D006084 ORTHO05D007449 2.8e-40 168.7 125 62.4
GSVIVG01032459001 Vitis vinifera HOM05D006084 ORTHO05D007449 2.8e-40 168.7 118 68.6
CARHR198600 Cardamine hirsuta HOM05D006084 ORTHO05D007449 3.7e-40 168.3 118 69.5
Hma1.2p1_0056F.1_g031653 Hydrangea macrophylla HOM05D006084 ORTHO05D007449 3.7e-40 168.3 105 74.3
HPP92_022049 Vanilla planifolia HOM05D006084 ORTHO05D007449 3.7e-40 168.3 120 66.7
BcaB01g05101 Brassica carinata HOM05D006084 ORTHO05D007449 4.8e-40 167.9 118 70.3
C03p07740 Brassica napus HOM05D006084 ORTHO05D007449 4.8e-40 167.9 118 70.3
BolC3t13274H Brassica oleracea HOM05D006084 ORTHO05D007449 4.8e-40 167.9 118 70.3
Thhalv10015025m.g Eutrema salsugineum HOM05D006084 ORTHO05D007449 4.8e-40 167.9 118 69.5
Carub.0006s1288 Capsella rubella HOM05D006084 ORTHO05D007449 6.3e-40 167.5 118 68.6
Sc03g0007970 Simmondsia chinensis HOM05D006084 ORTHO05D007449 6.3e-40 167.5 118 68.6
TWI12G0619 Tripterygium wilfordii HOM05D006084 ORTHO05D007449 1.1e-39 166.8 125 66.4
FvH4_6g50830 Fragaria vesca HOM05D006084 ORTHO05D007449 1.4e-39 166.4 118 67.8
Hma1.2p1_1415F.1_g281960 Hydrangea macrophylla HOM05D006084 ORTHO05D007449 1.8e-39 166.0 105 74.3
BcaC03g13452 Brassica carinata HOM05D006084 ORTHO05D007449 2.4e-39 165.6 118 68.6
C02p07250 Brassica napus HOM05D006084 ORTHO05D007449 2.4e-39 165.6 118 68.6
BolC2t06657H Brassica oleracea HOM05D006084 ORTHO05D007449 2.4e-39 165.6 118 68.6
AT5G14710 Arabidopsis thaliana HOM05D006084 ORTHO05D007449 3.1e-39 165.2 118 67.8
FAN02G2714 Fragaria x ananassa HOM05D006084 ORTHO05D007449 4.1e-39 164.9 118 66.9
FAN14G2625 Fragaria x ananassa HOM05D006084 ORTHO05D007449 4.1e-39 164.9 118 66.9
AL6G25480 Arabidopsis lyrata HOM05D006084 ORTHO05D007449 7.0e-39 164.1 118 67.8
MELO3C005689.2 Cucumis melo HOM05D006084 ORTHO05D007449 9.1e-39 163.7 125 62.4
SGA_v2.0_scaffold2848G54225 Striga asiatica HOM05D006084 ORTHO05D007449 3.5e-38 161.8 118 66.1
BcaC04g19017 Brassica carinata HOM05D006084 ORTHO05D007449 4.5e-38 161.4 111 70.3
Aa31LG11G14750 Aethionema arabicum HOM05D006084 ORTHO05D007449 7.7e-38 160.6 118 67.8
PSO210G7688 Papaver somniferum HOM05D006084 ORTHO05D007449 7.7e-38 160.6 122 64.8
FAN05G5625 Fragaria x ananassa HOM05D006084 ORTHO05D007449 1.0e-37 160.2 116 66.4
PSO782G1469 Papaver somniferum HOM05D006084 ORTHO05D007449 1.0e-37 160.2 118 66.9
Os10g0395500 Oryza sativa ssp. japonica HOM05D006084 ORTHO05D007449 2.9e-37 158.7 118 63.6
PSO566G0352 Papaver somniferum HOM05D006084 ORTHO05D007449 2.9e-37 158.7 117 67.5
Zm00001eb048120 Zea mays HOM05D006084 ORTHO05D007449 2.9e-37 158.7 122 61.5
Peaxi162Scf00129g01228 Petunia axillaris HOM05D006084 ORTHO05D007449 5.0e-37 157.9 105 69.5
unitig_746.g26552 Utricularia gibba HOM05D006084 ORTHO05D007449 2.5e-36 155.6 118 61.9
arahy.Tifrunner.gnm1.ann1.GQ5XJ3 Arachis hypogaea HOM05D006084 ORTHO05D007449 1.6e-35 152.9 137 60.6
C09p62430 Brassica napus HOM05D006084 ORTHO05D007449 6.1e-35 151.0 100 71.0
MBI19_g17406_MAGBIO Magnolia biondii HOM05D006084 ORTHO05D007449 8.0e-35 150.6 128 57.0
ClCG09G019010 Citrullus lanatus HOM05D006084 ORTHO05D007449 1.0e-34 150.2 147 51.7
Gorai.001G262800 Gossypium raimondii HOM05D006084 ORTHO05D007449 1.4e-34 149.8 101 70.3
FAN09G3162 Fragaria x ananassa HOM05D006084 ORTHO05D007449 2.3e-34 149.1 106 67.0
BolC9t59081H Brassica oleracea HOM05D006084 ORTHO05D007449 1.2e-33 146.7 100 70.0
EL10Ac3g07214 Beta vulgaris HOM05D006084 ORTHO05D007449 1.5e-33 146.4 113 61.9
Lsat_1_v5_gn_2_91880 Lactuca sativa HOM05D006084 ORTHO05D007449 1.5e-33 146.4 124 60.5
Nn3g16859 Nelumbo nucifera HOM05D006084 ORTHO05D007449 1.5e-33 146.4 122 63.1
ClCG00G003490 Citrullus lanatus HOM05D006084 ORTHO05D007449 2.6e-33 145.6 145 51.0
MBI19_g07248_MAGBIO Magnolia biondii HOM05D006084 ORTHO05D007449 2.6e-33 145.6 130 56.2
Sabra16G0228900 Salix brachista HOM05D006084 ORTHO05D007449 6.3e-32 141.0 217 39.6
Mapoly0005s0179 Marchantia polymorpha HOM05D006084 ORTHO05D007449 1.2e-30 136.7 118 54.2
Pp3c26_1260 Physcomitrium patens HOM05D006084 ORTHO05D007449 4.5e-30 134.8 127 51.2
Nitab4.5_0007141g0020 Nicotiana tabacum HOM05D006084 ORTHO05D007449 1.0e-29 133.7 107 60.7
SHI16396 Sapria himalayana HOM05D006084 ORTHO05D007449 3.8e-29 131.7 101 60.4
Cpa.g.c30698.2 Carica papaya HOM05D006084 ORTHO05D007449 8.6e-29 130.6 88 71.6
AUR62031990 Chenopodium quinoa HOM05D006084 ORTHO05D007449 8.6e-29 130.6 125 56.0
Duzib264G1216 Durio zibethinus HOM05D006084 ORTHO05D007449 4.3e-28 128.3 88 69.3
Solyc02g086780.4 Solanum lycopersicum HOM05D006084 ORTHO05D007449 5.6e-28 127.9 81 74.1
DCAR_011237 Daucus carota HOM05D006084 ORTHO05D007449 3.6e-27 125.2 114 58.8
Ciclev10017692m.g Citrus clementina HOM05D006084 ORTHO05D007449 5.8e-25 117.9 74 71.6
SMO367G0706 Selaginella moellendorffii HOM05D006084 ORTHO05D007449 9.8e-25 117.1 103 53.4
Nitab4.5_0006281g0070 Nicotiana tabacum HOM05D006084 ORTHO05D007449 1.1e-23 113.6 74 71.6
CBR_g5628 Chara braunii HOM05D006084 ORTHO05D007449 9.2e-23 110.5 121 45.5
Ca_03224_v3 Cicer arietinum L. HOM05D006084 ORTHO05D007449 3.5e-22 108.6 69 75.4
AUR62030334 Chenopodium quinoa HOM05D006084 ORTHO05D007449 2.5e-20 102.4 74 66.2
AagrBONN_evm.TU.Sc2ySwM_228.3157 Anthoceros agrestis HOM05D006084 ORTHO05D007449 4.3e-20 101.7 85 49.4
Cre13.g571000 Chlamydomonas reinhardtii HOM05D006084 ORTHO05D007449 9.5e-20 100.5 121 41.3
BraA10t44460Z Brassica rapa HOM05D006084 ORTHO05D007449 8.9e-18 94.0 88 55.7
Os01g0339600 Oryza sativa ssp. japonica HOM05D006084 ORTHO05D007449 2.0e-17 92.8 70 62.9
MELO3C033557.2 Cucumis melo HOM05D006084 ORTHO05D007449 1.7e-16 89.7 95 51.6
arahy.Tifrunner.gnm1.ann1.2H702Y Arachis hypogaea HOM05D006084 ORTHO05D007449 1.4e-15 86.7 59 72.9
Dinv35076 Davidia involucrata HOM05D006084 ORTHO05D007449 2.1e-14 82.8 52 71.2
SEGI_25092 Sequoiadendron giganteum HOM05D006084 ORTHO05D007449 4.0e-10 68.6 61 45.9
A10p23960 Brassica napus HOM05D006084 ORTHO05D007449 2.9e-08 62.4 131 36.6
MCO07G269 Micromonas commoda HOM05D006084 ORTHO05D007449 3.2e-07 58.9 103 30.1


User provided reference genes

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