Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g01870 Coffea canephora HOM05D005182 ORTHO05D006631 2.5e-121 438.7 211 100.0
DCAR_011246 Daucus carota HOM05D005182 ORTHO05D006631 3.3e-81 305.4 209 70.3
SGA_v2.0_scaffold481G52321 Striga asiatica HOM05D005182 ORTHO05D006631 1.8e-79 299.7 189 73.5
Nitab4.5_0005432g0010 Nicotiana tabacum HOM05D005182 ORTHO05D006631 1.2e-78 297.0 211 69.2
SalBow1G7073 Salvia bowleyana HOM05D005182 ORTHO05D006631 1.3e-77 293.5 212 69.8
Sopen02g031300 Solanum pennellii HOM05D005182 ORTHO05D006631 4.9e-77 291.6 211 68.7
Solyc02g086560.3 Solanum lycopersicum HOM05D005182 ORTHO05D006631 2.4e-76 289.3 211 68.2
TAR629G2348 Trochodendron aralioides HOM05D005182 ORTHO05D006631 1.2e-75 287.0 207 67.1
Nitab4.5_0002682g0020 Nicotiana tabacum HOM05D005182 ORTHO05D006631 2.7e-75 285.8 189 70.9
PGSC0003DMG400000477 Solanum tuberosum HOM05D005182 ORTHO05D006631 7.8e-75 284.3 211 67.3
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 3.9e-74 282.0 201 68.2
CAN.G1799.12 Capsicum annuum HOM05D005182 ORTHO05D006631 8.7e-74 280.8 211 67.3
Manes.17G115200 Manihot esculenta HOM05D005182 ORTHO05D006631 1.9e-73 279.6 160 79.4
Actinidia06755 Actinidia chinensis HOM05D005182 ORTHO05D006631 3.3e-73 278.9 209 66.0
TWI12G0687 Tripterygium wilfordii HOM05D005182 ORTHO05D006631 9.6e-73 277.3 205 64.4
MD09G1028700 Malus domestica HOM05D005182 ORTHO05D006631 1.6e-72 276.6 209 64.6
Dinv35097 Davidia involucrata HOM05D005182 ORTHO05D006631 2.8e-72 275.8 168 73.8
THA.LOC104801894 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 1.1e-71 273.9 197 66.5
Aqoxy3G02839 Aquilegia oxysepala HOM05D005182 ORTHO05D006631 1.4e-71 273.5 215 65.1
Eucgr.J02232 Eucalyptus grandis HOM05D005182 ORTHO05D006631 5.3e-71 271.6 200 63.5
vmacro04855 Vaccinium macrocarpon HOM05D005182 ORTHO05D006631 9.0e-71 270.8 217 65.4
Cfa007391 Carpinus fangiana HOM05D005182 ORTHO05D006631 1.2e-70 270.4 211 61.1
COL.COLO4_29086 Corchorus olitorius HOM05D005182 ORTHO05D006631 1.2e-70 270.4 168 72.0
ECA246G2600 Erigeron canadensis HOM05D005182 ORTHO05D006631 1.2e-70 270.4 206 64.6
Peaxi162Scf00129g01422 Petunia axillaris HOM05D005182 ORTHO05D006631 1.2e-70 270.4 148 83.8
CiPaw.02G035100 Carya illinoinensis HOM05D005182 ORTHO05D006631 1.5e-70 270.0 178 68.5
MD17G1030300 Malus domestica HOM05D005182 ORTHO05D006631 2.6e-70 269.2 215 62.3
QL02p075210 Quercus lobata HOM05D005182 ORTHO05D006631 2.6e-70 269.2 212 63.2
Migut.H00088 Erythranthe guttata HOM05D005182 ORTHO05D006631 3.4e-70 268.9 218 65.6
Gohir.A07G222400 Gossypium hirsutum HOM05D005182 ORTHO05D006631 3.4e-70 268.9 176 71.6
VMungo0464G0237 Vigna mungo HOM05D005182 ORTHO05D006631 3.4e-70 268.9 160 78.8
CANSAT64G2419 Cannabis sativa HOM05D005182 ORTHO05D006631 4.4e-70 268.5 160 76.2
Prupe.3G289500 Prunus persica HOM05D005182 ORTHO05D006631 4.4e-70 268.5 160 77.5
Haze_14718 Corylus avellana HOM05D005182 ORTHO05D006631 1.3e-69 266.9 178 68.0
Glyma.05G004900 Glycine max HOM05D005182 ORTHO05D006631 1.3e-69 266.9 160 78.1
PGR024G0002 Punica granatum HOM05D005182 ORTHO05D006631 2.9e-69 265.8 188 66.0
Thecc.04G015200 Theobroma cacao HOM05D005182 ORTHO05D006631 2.9e-69 265.8 181 70.2
HanXRQChr17g0548351 Helianthus annuus HOM05D005182 ORTHO05D006631 3.8e-69 265.4 190 68.4
Gohir.D07G229100 Gossypium hirsutum HOM05D005182 ORTHO05D006631 4.9e-69 265.0 171 71.9
Gorai.001G264200 Gossypium raimondii HOM05D005182 ORTHO05D006631 4.9e-69 265.0 171 71.9
Peaxi162Scf00304g01217 Petunia axillaris HOM05D005182 ORTHO05D006631 6.4e-69 264.6 145 83.4
Lj2g0004707 Lotus japonicus HOM05D005182 ORTHO05D006631 8.4e-69 264.2 209 64.1
Atru.chr6.2358 Acer truncatum HOM05D005182 ORTHO05D006631 1.1e-68 263.8 146 83.6
THA.LOC104807109 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 1.9e-68 263.1 197 65.0
Rhsim02G0095200 Rhododendron simsii HOM05D005182 ORTHO05D006631 5.4e-68 261.5 231 58.9
MBI16_g14596_MAGBIO Magnolia biondii HOM05D005182 ORTHO05D006631 7.1e-68 261.2 154 77.9
Phvul.004G010800 Phaseolus vulgaris HOM05D005182 ORTHO05D006631 7.1e-68 261.2 160 75.6
AUR62032437 Chenopodium quinoa HOM05D005182 ORTHO05D006631 9.3e-68 260.8 179 68.2
Cpa.g.c28071.2 Carica papaya HOM05D005182 ORTHO05D006631 1.6e-67 260.0 196 63.8
TPR.G14069 Trifolium pratense HOM05D005182 ORTHO05D006631 1.6e-67 260.0 153 79.1
PGR142G3360 Punica granatum HOM05D005182 ORTHO05D006631 2.7e-67 259.2 188 65.4
Nn3g16771 Nelumbo nucifera HOM05D005182 ORTHO05D006631 4.6e-67 258.5 148 78.4
RcHm_v2.0_Chr2g0173081 Rosa chinensis HOM05D005182 ORTHO05D006631 7.9e-67 257.7 160 75.0
AUR62024784 Chenopodium quinoa HOM05D005182 ORTHO05D006631 1.0e-66 257.3 175 69.1
CARHR040200 Cardamine hirsuta HOM05D005182 ORTHO05D006631 1.7e-66 256.5 153 77.8
Ciclev10016757m.g Citrus clementina HOM05D005182 ORTHO05D006631 2.3e-66 256.1 151 78.8
Potri.001G178800 Populus trichocarpa HOM05D005182 ORTHO05D006631 2.3e-66 256.1 165 72.7
Psat1g190920 Pisum sativum HOM05D005182 ORTHO05D006631 3.9e-66 255.4 153 77.8
A08p03300 Brassica napus HOM05D005182 ORTHO05D006631 6.6e-66 254.6 161 72.7
CsaV3_5G027220 Cucumis sativus L. HOM05D005182 ORTHO05D006631 6.6e-66 254.6 142 79.6
Medtr6g005390 Medicago truncatula HOM05D005182 ORTHO05D006631 6.6e-66 254.6 153 77.8
Thhalv10011756m.g Eutrema salsugineum HOM05D005182 ORTHO05D006631 8.7e-66 254.2 215 61.9
Sabra01G0148000 Salix brachista HOM05D005182 ORTHO05D006631 1.1e-65 253.8 145 79.3
Sp1g37040 Schrenkiella parvula HOM05D005182 ORTHO05D006631 1.1e-65 253.8 178 68.0
Aa31LG10G4000 Aethionema arabicum HOM05D005182 ORTHO05D006631 1.9e-65 253.1 160 73.1
AL1G57790 Arabidopsis lyrata HOM05D005182 ORTHO05D006631 2.5e-65 252.7 160 73.8
Carub.0001s3930 Capsella rubella HOM05D005182 ORTHO05D006631 2.5e-65 252.7 215 60.5
FvH4_3g28470 Fragaria vesca HOM05D005182 ORTHO05D006631 3.3e-65 252.3 172 71.5
AT1G50170 Arabidopsis thaliana HOM05D005182 ORTHO05D006631 4.3e-65 251.9 155 76.1
BraA08t32363Z Brassica rapa HOM05D005182 ORTHO05D006631 4.3e-65 251.9 177 67.2
FAN21G0797 Fragaria x ananassa HOM05D005182 ORTHO05D006631 4.3e-65 251.9 160 74.4
C03p89510 Brassica napus HOM05D005182 ORTHO05D006631 5.6e-65 251.5 161 72.7
BolC3t21265H Brassica oleracea HOM05D005182 ORTHO05D006631 5.6e-65 251.5 161 72.7
MELO3C021568.2 Cucumis melo HOM05D005182 ORTHO05D006631 5.6e-65 251.5 142 78.2
ATR0661G518 Amborella trichopoda HOM05D005182 ORTHO05D006631 2.1e-64 249.6 143 79.7
FAN11G2673 Fragaria x ananassa HOM05D005182 ORTHO05D006631 2.1e-64 249.6 160 74.4
Cfa007386 Carpinus fangiana HOM05D005182 ORTHO05D006631 4.8e-64 248.4 203 59.1
Ca_04172_v3 Cicer arietinum L. HOM05D005182 ORTHO05D006631 4.8e-64 248.4 153 76.5
Sed0010591 Sechium edule HOM05D005182 ORTHO05D006631 1.4e-63 246.9 156 71.2
CDE06G0683 Ceratophyllum demersum HOM05D005182 ORTHO05D006631 1.8e-63 246.5 151 72.2
EL10Ac2g02464 Beta vulgaris HOM05D005182 ORTHO05D006631 4.0e-63 245.4 171 65.5
Rhsim09G0149800 Rhododendron simsii HOM05D005182 ORTHO05D006631 4.5e-62 241.9 222 56.8
Zm00001eb072570 Zea mays HOM05D005182 ORTHO05D006631 2.9e-61 239.2 147 73.5
Dinv33456 Davidia involucrata HOM05D005182 ORTHO05D006631 6.4e-61 238.0 189 64.0
CiPaw.03G042000 Carya illinoinensis HOM05D005182 ORTHO05D006631 6.0e-59 231.5 178 62.9
Oeu057055.1 Olea europaea HOM05D005182 ORTHO05D006631 1.8e-58 229.9 126 83.3
MSTRG.3153 Avicennia marina HOM05D005182 ORTHO05D006631 2.3e-58 229.6 155 71.0
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 2.3e-58 229.6 160 68.1
Medtr6g005410 Medicago truncatula HOM05D005182 ORTHO05D006631 1.1e-57 227.3 150 71.3
GSVIVG01032428001 Vitis vinifera HOM05D005182 ORTHO05D006631 2.8e-56 222.6 124 81.5
arahy.Tifrunner.gnm1.ann1.1JMX4I Arachis hypogaea HOM05D005182 ORTHO05D006631 8.1e-56 221.1 146 72.6
arahy.Tifrunner.gnm1.ann1.NIKC7C Arachis hypogaea HOM05D005182 ORTHO05D006631 2.4e-55 219.5 124 80.6
Sed0025592 Sechium edule HOM05D005182 ORTHO05D006631 1.2e-54 217.2 186 59.1
unitig_746.g26550 Utricularia gibba HOM05D005182 ORTHO05D006631 2.0e-54 216.5 126 76.2
CSS0002021 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 3.4e-54 215.7 144 70.1
ClCG00G002150 Citrullus lanatus HOM05D005182 ORTHO05D006631 4.5e-54 215.3 156 64.7
ClCG09G019170 Citrullus lanatus HOM05D005182 ORTHO05D006631 4.5e-54 215.3 156 64.7
SMO356G0462 Selaginella moellendorffii HOM05D005182 ORTHO05D006631 4.9e-53 211.8 141 64.5
Hma1.2p1_1291F.1_g273570 Hydrangea macrophylla HOM05D005182 ORTHO05D006631 1.9e-52 209.9 124 74.2
SHI25748 Sapria himalayana HOM05D005182 ORTHO05D006631 6.0e-51 204.9 160 62.5
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 5.1e-50 201.8 138 63.0
Psat1g058400 Pisum sativum HOM05D005182 ORTHO05D006631 7.4e-49 198.0 142 64.1
BcaC01g01215 Brassica carinata HOM05D005182 ORTHO05D006631 3.1e-47 192.6 161 58.4
RcHm_v2.0_Chr1g0351301 Rosa chinensis HOM05D005182 ORTHO05D006631 3.1e-47 192.6 212 50.9
arahy.Tifrunner.gnm1.ann1.0YQ56L Arachis hypogaea HOM05D005182 ORTHO05D006631 7.6e-46 188.0 153 60.1
MSTRG.15523 Avicennia marina HOM05D005182 ORTHO05D006631 6.5e-45 184.9 135 65.9
Psat1g058360 Pisum sativum HOM05D005182 ORTHO05D006631 6.5e-45 184.9 144 57.6
CBR_g4824 Chara braunii HOM05D005182 ORTHO05D006631 1.4e-44 183.7 146 59.6
Cpa.g.sc130.27 Carica papaya HOM05D005182 ORTHO05D006631 2.1e-43 179.9 113 75.2
SEGI_02514 Sequoiadendron giganteum HOM05D005182 ORTHO05D006631 7.9e-43 177.9 113 70.8
QL09p000526 Quercus lobata HOM05D005182 ORTHO05D006631 1.3e-42 177.2 99 77.8
Os02g0296800 Oryza sativa ssp. japonica HOM05D005182 ORTHO05D006631 1.8e-42 176.8 108 70.4
CiPaw.02G035200 Carya illinoinensis HOM05D005182 ORTHO05D006631 3.0e-42 176.0 100 75.0
MCO08G118 Micromonas commoda HOM05D005182 ORTHO05D006631 3.9e-42 175.6 133 60.2
Sc19g0005880 Simmondsia chinensis HOM05D005182 ORTHO05D006631 2.5e-41 172.9 206 46.1
Hund03875 Selenicereus undatus HOM05D005182 ORTHO05D006631 5.7e-41 171.8 108 71.3
FvH4_6g51400 Fragaria vesca HOM05D005182 ORTHO05D006631 1.6e-40 170.2 123 64.2
FAN14G1378 Fragaria x ananassa HOM05D005182 ORTHO05D006631 1.6e-40 170.2 123 64.2
Mapoly0034s0026 Marchantia polymorpha HOM05D005182 ORTHO05D006631 1.6e-40 170.2 112 67.9
Duzib187G0244 Durio zibethinus HOM05D005182 ORTHO05D006631 3.7e-40 169.1 101 73.3
Cpa.g.sc130.26 Carica papaya HOM05D005182 ORTHO05D006631 8.2e-40 167.9 111 70.3
Ah.12g060430 Amaranthus hybridus HOM05D005182 ORTHO05D006631 9.0e-39 164.5 173 49.7
AagrBONN_evm.TU.Sc2ySwM_228.389 Anthoceros agrestis HOM05D005182 ORTHO05D006631 5.1e-34 148.7 98 60.2
arahy.Tifrunner.gnm1.ann1.C5A6Z1 Arachis hypogaea HOM05D005182 ORTHO05D006631 1.9e-28 130.2 117 56.4
Prupe.3G289700 Prunus persica HOM05D005182 ORTHO05D006631 3.2e-28 129.4 74 77.0
Cre04.g214100 Chlamydomonas reinhardtii HOM05D005182 ORTHO05D006631 3.6e-27 125.9 141 41.1
Glyma.17G203751 Glycine max HOM05D005182 ORTHO05D006631 3.0e-26 122.9 75 70.7
EL10Ac6g14578 Beta vulgaris HOM05D002842 ORTHO05D003177 6.7e-26 121.7 100 58.0
EL10Ac5g10908 Beta vulgaris HOM05D005182 ORTHO05D006631 2.0e-25 120.2 100 57.0
EL10Ac6g13785 Beta vulgaris HOM05D005182 ORTHO05D006631 4.4e-25 119.0 100 57.0
Cpa.g.sc171.39 Carica papaya HOM05D005182 ORTHO05D006631 3.7e-24 115.9 68 73.5
FAN05G5577 Fragaria x ananassa HOM05D005182 ORTHO05D006631 5.3e-23 112.1 87 60.9
Prupe.3G207400 Prunus persica HOM05D005182 ORTHO05D006631 9.1e-23 111.3 85 65.9
Hund04415 Selenicereus undatus HOM05D005182 ORTHO05D006631 4.5e-22 109.0 63 76.2
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 1.6e-19 100.5 86 52.3
Ah.15g100150 Amaranthus hybridus HOM05D008863 ORTHO05D006631 3.6e-19 99.4 65 64.6
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 3.6e-19 99.4 86 54.7
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 2.3e-18 96.7 61 68.9
RcHm_v2.0_Chr7g0228061 Rosa chinensis HOM05D005182 ORTHO05D006631 7.5e-17 91.7 73 58.9
PRCOL_00005828 Prasinoderma coloniale HOM05D005182 ORTHO05D006631 4.8e-16 89.0 80 50.0
Cpa.g.c30633.2 Carica papaya HOM05D005182 ORTHO05D006631 1.1e-15 87.8 58 63.8
Zm00001eb085260 Zea mays HOM05D005182 ORTHO05D006631 8.0e-11 71.6 48 70.8
RcHm_v2.0_Chr7g0228091 Rosa chinensis HOM05D005182 ORTHO05D344069 1.7e-08 63.9 96 40.6
Dinv33459 Davidia involucrata HOM05D005182 ORTHO05D006631 9.1e-07 58.2 33 69.7


User provided reference genes

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