Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g01800 Coffea canephora HOM05D004010 ORTHO05D004995 0.0e+00 2647.8 1358 100.0
Dinv33448 Davidia involucrata HOM05D004010 ORTHO05D004995 0.0e+00 1631.3 1352 62.4
QL02p075066 Quercus lobata HOM05D004010 ORTHO05D004995 0.0e+00 1484.9 1365 57.1
TAR371G0622 Trochodendron aralioides HOM05D004010 ORTHO05D004995 0.0e+00 1479.5 1355 57.8
Sopen02g031220 Solanum pennellii HOM05D004010 ORTHO05D004995 0.0e+00 1475.7 1351 57.5
Solyc02g086500.3 Solanum lycopersicum HOM05D004010 ORTHO05D004995 0.0e+00 1470.7 1350 57.2
Rhsim10G0018100 Rhododendron simsii HOM05D004010 ORTHO05D004995 0.0e+00 1457.2 1432 54.5
Prupe.3G290300 Prunus persica HOM05D004010 ORTHO05D004995 0.0e+00 1454.9 1351 56.8
CiPaw.03G042500 Carya illinoinensis HOM05D004010 ORTHO05D004995 0.0e+00 1449.5 1354 55.9
Cfa007379 Carpinus fangiana HOM05D004010 ORTHO05D004995 0.0e+00 1448.0 1358 56.3
vmacro05856 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 0.0e+00 1443.7 1448 53.9
Manes.17G113000 Manihot esculenta HOM05D004010 ORTHO05D004995 0.0e+00 1425.2 1354 55.2
MD09G1028200 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 1415.6 1351 55.0
Thecc.04G015900 Theobroma cacao HOM05D004010 ORTHO05D004995 0.0e+00 1405.2 1354 54.6
FvH4_6g51330 Fragaria vesca HOM05D004010 ORTHO05D004995 0.0e+00 1402.9 1353 54.3
RcHm_v2.0_Chr2g0173001 Rosa chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1401.3 1353 54.6
MD17G1029800 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 1393.3 1352 55.3
TWI36G0979 Tripterygium wilfordii HOM05D004010 ORTHO05D004995 0.0e+00 1381.3 1356 54.6
Potri.001G346000 Populus trichocarpa HOM05D004010 ORTHO05D004995 0.0e+00 1375.1 1355 54.8
CANSAT64G1980 Cannabis sativa HOM05D004010 ORTHO05D004995 0.0e+00 1370.9 1355 54.3
Lsat_1_v5_gn_4_183480 Lactuca sativa HOM05D004010 ORTHO05D004995 0.0e+00 1365.1 1353 53.9
Gorai.006G032700 Gossypium raimondii HOM05D004010 ORTHO05D004995 0.0e+00 1364.7 1356 53.6
Nn4g22648 Nelumbo nucifera HOM05D004010 ORTHO05D004995 0.0e+00 1363.6 1356 54.9
Haze_14730 Corylus avellana HOM05D004010 ORTHO05D004995 0.0e+00 1351.3 1405 52.5
Migut.H00083 Erythranthe guttata HOM05D004010 ORTHO05D004995 0.0e+00 1348.2 1369 53.6
Lalb_Chr24g0397171 Lupinus albus HOM05D004010 ORTHO05D004995 0.0e+00 1337.0 1355 53.0
Lj2g0015656 Lotus japonicus HOM05D004010 ORTHO05D004995 0.0e+00 1333.9 1355 53.6
HanXRQChr09g0255111 Helianthus annuus HOM05D004010 ORTHO05D004995 0.0e+00 1329.3 1354 53.8
PGR142G3424 Punica granatum HOM05D004010 ORTHO05D004995 0.0e+00 1315.1 1358 51.9
Aqoxy3G01154 Aquilegia oxysepala HOM05D004010 ORTHO05D004995 0.0e+00 1312.4 1354 52.1
Glyma.19G004700 Glycine max HOM05D004010 ORTHO05D004995 0.0e+00 1310.4 1357 52.8
ECA232G4079 Erigeron canadensis HOM05D004010 ORTHO05D004995 0.0e+00 1310.0 1347 52.6
Eucgr.I01751 Eucalyptus grandis HOM05D004010 ORTHO05D004995 0.0e+00 1302.0 1351 52.0
SalBow6G2090 Salvia bowleyana HOM05D004010 ORTHO05D004995 0.0e+00 1286.2 1440 50.2
FAN14G1482 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1285.8 1353 51.2
FAN05G5546 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1284.2 1353 51.1
Sc03g0007550 Simmondsia chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1283.1 1352 51.8
Ca_04154_v3 Cicer arietinum L. HOM05D004010 ORTHO05D004995 0.0e+00 1279.6 1356 51.0
TPR.G14085 Trifolium pratense HOM05D004010 ORTHO05D004995 0.0e+00 1278.5 1355 51.3
arahy.Tifrunner.gnm1.ann1.8M6LVM Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 1276.2 1345 51.4
Sabra16G0225000 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 1275.8 1499 49.0
CsaV3_3G042730 Cucumis sativus L. HOM05D004010 ORTHO05D004995 0.0e+00 1273.1 1360 50.6
ClCG10G013960 Citrullus lanatus HOM05D004010 ORTHO05D004995 0.0e+00 1270.4 1360 50.6
Sed0022234 Sechium edule HOM05D004010 ORTHO05D004995 0.0e+00 1270.4 1359 50.7
VMungo0464G1595 Vigna mungo HOM05D004010 ORTHO05D004995 0.0e+00 1269.6 1370 51.0
DCAR_001437 Daucus carota HOM05D004010 ORTHO05D004995 0.0e+00 1268.4 1352 52.0
FAN09G4321 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1268.1 1353 50.8
PSO478G2834 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 1266.9 1366 51.0
Sabra16G0225700 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 1264.2 1540 48.0
Medtr6g005010 Medicago truncatula HOM05D004010 ORTHO05D004995 0.0e+00 1263.4 1344 51.3
PSO017G0470 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 1260.7 1362 50.8
Actinidia36110 Actinidia chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1253.8 1179 57.1
MELO3C009985.2 Cucumis melo HOM05D004010 ORTHO05D004995 0.0e+00 1248.4 1365 49.7
arahy.Tifrunner.gnm1.ann1.TK4K1F Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 1245.7 1389 49.7
THA.LOC104825324 Tarenaya hassleriana HOM05D004010 ORTHO05D004995 0.0e+00 1235.7 1350 48.8
Phvul.004G009818 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 1233.0 1357 50.0
Nitab4.5_0006802g0030 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 1231.1 1381 49.5
GSVIVG01032418001 Vitis vinifera HOM05D004010 ORTHO05D004995 0.0e+00 1221.8 1069 59.0
Thhalv10003508m.g Eutrema salsugineum HOM05D004010 ORTHO05D004995 0.0e+00 1199.9 1356 48.4
Sp2g16800 Schrenkiella parvula HOM05D004010 ORTHO05D004995 0.0e+00 1199.1 1351 48.0
BcaC06g30965 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 1191.8 1354 48.4
BraA06t27018Z Brassica rapa HOM05D004010 ORTHO05D004995 0.0e+00 1188.3 1352 48.1
AL5G17090 Arabidopsis lyrata HOM05D004010 ORTHO05D004995 0.0e+00 1187.2 1351 47.0
A06p40990 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 1184.9 1351 47.8
SGA_v2.0_scaffold135G34899 Striga asiatica HOM05D004010 ORTHO05D004995 0.0e+00 1184.5 1422 47.5
AT3G27670 Arabidopsis thaliana HOM05D004010 ORTHO05D004995 0.0e+00 1184.1 1354 47.4
BcaC06g33789 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 1184.1 1355 47.7
C07p36860 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 1184.1 1355 47.7
BolC7t44198H Brassica oleracea HOM05D004010 ORTHO05D004995 0.0e+00 1184.1 1355 47.7
Carub.0005s0611 Capsella rubella HOM05D004010 ORTHO05D004995 0.0e+00 1182.2 1355 46.8
Gohir.D09G028100 Gossypium hirsutum HOM05D004010 ORTHO05D004995 0.0e+00 1180.2 1206 52.2
Aa31LG2G5000 Aethionema arabicum HOM05D004010 ORTHO05D004995 0.0e+00 1174.8 1356 48.3
CSS0029677 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 1166.8 1000 60.3
Duzib187G0443 Durio zibethinus HOM05D004010 ORTHO05D004995 0.0e+00 1127.1 1081 54.9
Psat1g055320 Pisum sativum HOM05D004010 ORTHO05D004995 0.0e+00 1117.8 1212 50.7
CSS0006564 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 1111.7 945 60.4
Peaxi162Scf00129g01535 Petunia axillaris HOM05D004010 ORTHO05D004995 0.0e+00 1075.8 1386 46.4
ATR1158G023 Amborella trichopoda HOM05D004010 ORTHO05D004995 4.3e-307 1058.5 1360 44.1
AUR62043055 Chenopodium quinoa HOM05D004010 ORTHO05D004995 7.3e-307 1057.7 1353 44.6
EL10Ac4g08587 Beta vulgaris HOM05D004010 ORTHO05D004995 3.6e-306 1055.4 1361 45.0
Ciclev10014033m.g Citrus clementina HOM05D004010 ORTHO05D004995 2.8e-298 1029.2 1006 55.2
COL.COLO4_29097 Corchorus olitorius HOM05D004010 ORTHO05D004995 1.5e-283 980.3 971 53.3
CAN.G473.4 Capsicum annuum HOM05D004010 ORTHO05D004995 7.1e-278 961.4 858 57.7
Os01g0169500 Oryza sativa ssp. japonica HOM05D004010 ORTHO05D004995 7.9e-269 931.4 1359 41.1
Nitab4.5_0002682g0110 Nicotiana tabacum HOM05D004010 ORTHO05D004995 3.9e-268 929.1 1395 41.6
AUR62034752 Chenopodium quinoa HOM05D004010 ORTHO05D004995 3.3e-251 872.8 1462 38.5
Oeu006813.1 Olea europaea HOM05D004010 ORTHO05D004995 1.5e-248 864.0 797 56.8
Zm00001eb123050 Zea mays HOM05D004010 ORTHO05D004995 1.6e-245 854.0 1356 39.8
PGSC0003DMG400012627 Solanum tuberosum HOM05D004010 ORTHO05D004995 2.0e-240 837.0 719 58.8
CARHR149120 Cardamine hirsuta HOM05D004010 ORTHO05D004995 5.0e-231 805.8 944 46.9
Lju41A39G70 Lonicera japonica HOM05D004010 ORTHO05D004995 4.2e-230 802.7 938 49.0
Atru.chr6.2370 Acer truncatum HOM05D004010 ORTHO05D004995 3.6e-221 773.1 644 61.6
MBI10_g32033_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 1.5e-203 714.5 882 46.4
Cpa.g.sc108.59 Carica papaya HOM05D004010 ORTHO05D004995 1.4e-201 708.0 731 52.5
Hund06717 Selenicereus undatus HOM05D004010 ORTHO05D004995 2.9e-199 700.3 856 46.1
Mapoly0001s0420 Marchantia polymorpha HOM05D004010 ORTHO05D004995 4.4e-163 580.1 1383 31.1
FAN05G3555 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.2e-152 545.4 589 50.3
Cpa.g.sc108.58 Carica papaya HOM05D004010 ORTHO05D004995 3.8e-130 470.7 648 43.4
Oeu006812.1 Olea europaea HOM05D004010 ORTHO05D004995 6.3e-125 453.4 430 55.8
Phvul.004G009761 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.1e-124 452.6 453 53.9
Sopen00g011090 Solanum pennellii HOM05D004010 ORTHO05D004995 4.2e-121 440.7 420 54.3
Phvul.004G009536 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 5.7e-118 430.3 460 51.5
Hund06718 Selenicereus undatus HOM05D004010 ORTHO05D004995 5.7e-118 430.3 522 45.6
CDE05G2835 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 2.2e-114 418.3 636 40.3
SMO361G0448 Selaginella moellendorffii HOM05D004010 ORTHO05D004995 1.0e-106 392.9 1345 27.0
Ciclev10017517m.g Citrus clementina HOM05D004010 ORTHO05D004995 2.7e-99 368.2 347 55.9
Phvul.004G009118 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 3.5e-99 367.9 373 51.2
Phvul.007G113156 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.9e-97 362.1 342 56.7
Lju41A39T81 Lonicera japonica HOM05D004010 ORTHO05D004995 9.4e-97 359.8 323 58.2
Gohir.A09G028500 Gossypium hirsutum HOM05D004010 ORTHO05D004995 2.7e-96 358.2 458 45.4
Hma1.2p1_1291F.1_g273520 Hydrangea macrophylla HOM05D004010 ORTHO05D004995 2.7e-96 358.2 395 52.9
CDE05G1902 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 4.7e-96 357.5 335 55.8
vmacro05455 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 1.3e-82 312.8 547 37.8
SEGI_19034 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 1.8e-79 302.4 618 33.0
CSS0026540 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 1.1e-71 276.6 276 53.6
vmacro05456 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 1.8e-71 275.8 321 48.0
Actinidia15573 Actinidia chinensis HOM05D004010 ORTHO05D004995 1.6e-67 262.7 266 52.6
CSS0021155 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 3.0e-66 258.5 227 60.4
Atru.chr6.2368 Acer truncatum HOM05D004010 ORTHO05D004995 1.6e-64 252.7 208 61.5
Atru.chr6.2275 Acer truncatum HOM05D004010 ORTHO05D004995 4.6e-59 234.6 194 61.3
Phvul.004G009161 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 4.6e-59 234.6 287 44.9
Phvul.004G009109 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 3.0e-58 231.9 287 44.6
MBI10_g46391_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 5.1e-50 204.5 281 42.0
Actinidia15574 Actinidia chinensis HOM05D004010 ORTHO05D004995 1.9e-49 202.6 200 56.0
CDE05G1248 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 3.1e-47 195.3 274 40.5
CAN.G473.5 Capsicum annuum HOM05D004010 ORTHO05D004995 5.3e-47 194.5 137 70.1
MBI10_g38112_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 3.4e-46 191.8 264 43.6
MBI10_g39276_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 2.3e-42 179.1 217 45.2
FAN05G1652 Fragaria x ananassa HOM05D004010 ORTHO05D004995 8.1e-40 170.6 247 40.9
CBR_g19447 Chara braunii HOM05D004010 ORTHO05D004995 8.7e-34 150.6 817 23.3
Actinidia36109 Actinidia chinensis HOM05D004010 ORTHO05D004995 1.5e-33 149.8 136 57.4
FAN14G2166 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.9e-33 149.4 131 57.3
Ah.06g187170 Amaranthus hybridus HOM05D004010 ORTHO05D004995 5.6e-33 147.9 137 56.9
Phvul.004G009127 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 3.7e-32 145.2 134 56.0
FvH4_6g51551 Fragaria vesca HOM05D004010 ORTHO05D004995 8.1e-32 144.1 131 54.2
RcHm_v2.0_Chr5g0081041 Rosa chinensis HOM05D004010 ORTHO05D004995 1.0e-29 137.1 250 35.6
FAN02G4182 Fragaria x ananassa HOM05D004010 ORTHO05D004995 2.9e-29 135.6 181 43.1
FAN14G1049 Fragaria x ananassa HOM05D004010 ORTHO05D004995 6.0e-27 127.9 224 36.6
FvH4_6g51542 Fragaria vesca HOM05D004010 ORTHO05D004995 1.0e-26 127.1 179 41.3
FvH4_6g51560 Fragaria vesca HOM05D004010 ORTHO05D004995 9.6e-25 120.6 123 49.6
CBR_g19445 Chara braunii HOM05D004010 ORTHO05D004995 3.7e-24 118.6 567 22.8
Phvul.007G112678 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.2e-22 113.6 140 45.0
BcaB05g24178 Brassica carinata HOM05D004010 ORTHO05D027244 5.5e-20 104.8 176 35.8
FvH4_5g31861 Fragaria vesca HOM05D004010 ORTHO05D046033 7.1e-20 104.4 86 55.8
SEGI_32252 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 9.3e-20 104.0 75 66.7
Atru.chr6.2371 Acer truncatum HOM05D004010 ORTHO05D004995 3.3e-17 95.5 104 44.2
FvH4_6g51541 Fragaria vesca HOM05D004010 ORTHO05D004995 8.5e-13 80.9 53 69.8
TPR.G14087 Trifolium pratense HOM05D004010 ORTHO05D004995 1.1e-12 80.5 52 69.2
FvH4_6g51540 Fragaria vesca HOM05D004010 ORTHO05D004995 1.9e-12 79.7 93 44.1
Atru.chr6.2369 Acer truncatum HOM05D004010 ORTHO05D004995 3.0e-10 72.4 122 36.9
HPP92_004913 Vanilla planifolia HOM05D004010 ORTHO05D004995 3.9e-10 72.0 84 50.0
BcaC02g11087 Brassica carinata HOM05D004010 ORTHO05D006095 2.0e-09 69.7 83 42.2
RcHm_v2.0_Chr4g0387881 Rosa chinensis HOM05D004010 ORTHO05D343204 3.7e-08 65.5 135 33.3
TPR.G14699 Trifolium pratense HOM05D000127 ORTHO05D000243 6.3e-08 64.7 104 38.5
TPR.G14702 Trifolium pratense HOM05D000127 ORTHO05D000243 1.8e-07 63.2 73 46.6
RcHm_v2.0_Chr3g0488481 Rosa chinensis HOM05D004010 ORTHO05D004995 4.5e-06 58.5 135 31.1
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 4.5e-06 58.5 44 63.6
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 4.5e-06 58.5 44 63.6


User provided reference genes

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