Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g01650 Coffea canephora HOM05D004963 ORTHO05D006638 0.0e+00 3889.0 1959 100.0
Dinv35107 Davidia involucrata HOM05D004963 ORTHO05D006638 0.0e+00 2494.9 1971 65.2
Nitab4.5_0001040g0180 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 2356.3 1980 60.4
CSS0016229 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 0.0e+00 2348.2 2056 60.7
MSTRG.3144 Avicennia marina HOM05D004963 ORTHO05D006638 0.0e+00 2342.0 1953 60.5
CAN.G257.2 Capsicum annuum HOM05D004963 ORTHO05D006638 0.0e+00 2341.2 1961 60.6
PGSC0003DMG400008314 Solanum tuberosum HOM05D004963 ORTHO05D006638 0.0e+00 2335.5 1946 60.6
Nitab4.5_0001655g0190 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 2335.1 1965 60.2
Lju41A42T102 Lonicera japonica HOM05D004963 ORTHO05D006638 0.0e+00 2326.2 1972 61.6
GSVIVG01032403001 Vitis vinifera HOM05D004963 ORTHO05D006638 0.0e+00 2318.1 1963 60.8
Solyc02g070810.4 Solanum lycopersicum HOM05D004963 ORTHO05D006638 0.0e+00 2315.0 1952 60.0
Sopen02g019920 Solanum pennellii HOM05D004963 ORTHO05D006638 0.0e+00 2315.0 1953 60.2
TAR629G0020 Trochodendron aralioides HOM05D004963 ORTHO05D006638 0.0e+00 2305.0 1960 60.7
Peaxi162Scf00796g00213 Petunia axillaris HOM05D004963 ORTHO05D006638 0.0e+00 2301.9 1936 59.9
SalBow1G1005 Salvia bowleyana HOM05D004963 ORTHO05D006638 0.0e+00 2263.4 1951 59.2
Cfa007367 Carpinus fangiana HOM05D004963 ORTHO05D006638 0.0e+00 2261.9 1959 59.3
CiPaw.03G043900 Carya illinoinensis HOM05D004963 ORTHO05D006638 0.0e+00 2243.8 1967 58.9
MD17G1026700 Malus domestica HOM05D004963 ORTHO05D006638 0.0e+00 2211.0 1969 57.9
Rhsim10G0016800 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 2206.8 2163 54.9
Prupe.3G292000 Prunus persica HOM05D004963 ORTHO05D006638 0.0e+00 2202.2 1962 57.7
Migut.H00075 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 2186.8 1941 58.4
TWI56G0249 Tripterygium wilfordii HOM05D004963 ORTHO05D006638 0.0e+00 2184.1 1974 57.3
DCAR_001439 Daucus carota HOM05D004963 ORTHO05D006638 0.0e+00 2182.5 1961 58.7
Thecc.04G017500 Theobroma cacao HOM05D004963 ORTHO05D006638 0.0e+00 2178.3 1977 57.7
SGA_v2.0_scaffold18G08276 Striga asiatica HOM05D004963 ORTHO05D006638 0.0e+00 2177.5 1971 57.3
Haze_14742 Corylus avellana HOM05D004963 ORTHO05D006638 0.0e+00 2174.4 1983 57.5
Manes.17G112100 Manihot esculenta HOM05D004963 ORTHO05D006638 0.0e+00 2172.5 1969 57.6
Potri.001G345100 Populus trichocarpa HOM05D004963 ORTHO05D006638 0.0e+00 2165.2 1976 56.9
Lj2g0007459 Lotus japonicus HOM05D004963 ORTHO05D006638 0.0e+00 2145.5 1975 56.1
vmacro05867 Vaccinium macrocarpon HOM05D004963 ORTHO05D006638 0.0e+00 2143.6 2137 54.5
TPR.G33247 Trifolium pratense HOM05D004963 ORTHO05D006638 0.0e+00 2139.4 1947 57.1
Glyma.05G003500 Glycine max HOM05D004963 ORTHO05D006638 0.0e+00 2137.1 1973 56.3
Medtr6g004840 Medicago truncatula HOM05D004963 ORTHO05D006638 0.0e+00 2131.3 1963 56.3
FvH4_6g51430 Fragaria vesca HOM05D004963 ORTHO05D006638 0.0e+00 2122.8 1973 56.5
PGR083G0595 Punica granatum HOM05D004963 ORTHO05D006638 0.0e+00 2122.8 1975 55.4
RcHm_v2.0_Chr2g0173101 Rosa chinensis HOM05D004963 ORTHO05D006638 0.0e+00 2122.1 1960 56.4
Psat1g054400 Pisum sativum HOM05D004963 ORTHO05D006638 0.0e+00 2119.4 1978 55.9
Ca_04160_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 0.0e+00 2118.2 1960 56.3
Phvul.004G006800 Phaseolus vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 2115.5 1967 55.6
Rhsim10G0015700 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 2101.6 1934 57.7
CANSAT64G0570 Cannabis sativa HOM05D004963 ORTHO05D006638 0.0e+00 2087.4 1970 55.3
Nn4g22627 Nelumbo nucifera HOM05D004963 ORTHO05D006638 0.0e+00 2083.5 1862 57.1
Lalb_Chr06g0175731 Lupinus albus HOM05D004963 ORTHO05D006638 0.0e+00 2082.4 1939 55.8
Sabra16G0224100 Salix brachista HOM05D004963 ORTHO05D006638 0.0e+00 2068.5 2169 51.6
arahy.Tifrunner.gnm1.ann1.8578L4 Arachis hypogaea HOM05D004963 ORTHO05D006638 0.0e+00 2056.6 1970 55.0
Sc03g0007420 Simmondsia chinensis HOM05D004963 ORTHO05D006638 0.0e+00 2037.3 1819 56.5
THA.LOC104805370 Tarenaya hassleriana HOM05D004963 ORTHO05D006638 0.0e+00 2029.2 1981 54.4
PSO063G6295 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 2028.4 1973 54.6
Aqoxy5G03770 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 0.0e+00 2026.1 1959 54.0
PSO067G0032 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 2004.6 1971 54.2
VMungo0464G1605 Vigna mungo HOM05D004963 ORTHO05D006638 0.0e+00 2000.7 2249 48.2
AL7G49340 Arabidopsis lyrata HOM05D004963 ORTHO05D006638 0.0e+00 1993.4 1971 53.6
COL.COLO4_29124 Corchorus olitorius HOM05D004963 ORTHO05D006638 0.0e+00 1991.1 1973 54.5
AT5G40480 Arabidopsis thaliana HOM05D004963 ORTHO05D006638 0.0e+00 1986.8 1972 53.4
BraA07t29729Z Brassica rapa HOM05D004963 ORTHO05D006638 0.0e+00 1981.8 1976 53.0
Thhalv10027618m.g Eutrema salsugineum HOM05D004963 ORTHO05D006638 0.0e+00 1980.7 1979 53.0
MELO3C026582.2 Cucumis melo HOM05D004963 ORTHO05D006638 0.0e+00 1980.3 1973 52.4
CsaV3_3G042810 Cucumis sativus L. HOM05D004963 ORTHO05D006638 0.0e+00 1980.3 1971 52.4
Duzib147G0997 Durio zibethinus HOM05D004963 ORTHO05D006638 0.0e+00 1979.9 1970 54.2
Carub.0007s3510 Capsella rubella HOM05D004963 ORTHO05D006638 0.0e+00 1974.9 1966 53.3
BolC6t37108H Brassica oleracea HOM05D004963 ORTHO05D006638 0.0e+00 1967.6 1987 52.7
BcaC08g44458 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 1966.8 1974 53.0
CARHR261510 Cardamine hirsuta HOM05D004963 ORTHO05D006638 0.0e+00 1966.0 1958 53.1
Sed0022939 Sechium edule HOM05D004963 ORTHO05D006638 0.0e+00 1964.1 1959 51.8
A07p20280 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 1963.0 2001 52.3
Ah.03g137060 Amaranthus hybridus HOM05D004963 ORTHO05D006638 0.0e+00 1962.6 1939 53.5
C06p19070 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 1951.0 2001 52.3
Gohir.A09G029300 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 1948.3 1811 56.0
Atru.chr6.2399 Acer truncatum HOM05D004963 ORTHO05D006638 0.0e+00 1947.6 1606 61.7
Sp7g01430 Schrenkiella parvula HOM05D004963 ORTHO05D006638 0.0e+00 1943.3 1984 52.3
Aa31LG9G1130 Aethionema arabicum HOM05D004963 ORTHO05D006638 0.0e+00 1924.8 2017 50.9
AUR62043498 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1903.3 1940 52.3
AUR62028465 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1849.3 1977 50.7
FAN14G4225 Fragaria x ananassa HOM05D004963 ORTHO05D006638 0.0e+00 1821.2 1963 50.6
EL10Ac6g14083 Beta vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 1813.5 1935 50.1
BcaB02g07947 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 1797.7 1839 52.3
ATR0824G203 Amborella trichopoda HOM05D004963 ORTHO05D006638 0.0e+00 1772.3 1974 48.3
Oeu046826.1 Olea europaea HOM05D004963 ORTHO05D006638 0.0e+00 1696.4 1281 66.0
Ciclev10018026m.g Citrus clementina HOM05D004963 ORTHO05D006638 0.0e+00 1506.9 1191 63.9
Zm00001eb096130 Zea mays HOM05D004963 ORTHO05D006638 0.0e+00 1364.7 1830 41.5
Eucgr.J02245 Eucalyptus grandis HOM05D004963 ORTHO05D006638 0.0e+00 1347.8 1266 54.8
unitig_748.g6983 Utricularia gibba HOM05D004963 ORTHO05D006638 0.0e+00 1278.1 1435 49.2
Mapoly0043s0050 Marchantia polymorpha HOM05D004963 ORTHO05D006638 0.0e+00 1220.7 2058 37.3
SMO145G0002 Selaginella moellendorffii HOM05D004963 ORTHO05D006638 0.0e+00 1214.1 1994 37.2
ClCG10G013880 Citrullus lanatus HOM05D004963 ORTHO05D006638 0.0e+00 1165.2 1081 55.9
Migut.J01521 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 1156.0 1142 54.5
Pp3c27_1470 Physcomitrium patens HOM05D004963 ORTHO05D006638 0.0e+00 1152.5 2034 35.9
Gohir.D09G029000 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 1082.0 1005 56.5
CBR_g4853 Chara braunii HOM05D004963 ORTHO05D006638 1.1e-287 994.6 2142 33.0
Migut.J01523 Erythranthe guttata HOM05D004963 ORTHO05D006638 4.6e-262 909.4 954 52.2
Gorai.006G033800 Gossypium raimondii HOM05D004963 ORTHO05D006638 5.5e-255 885.9 776 57.5
SEGI_19244 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 1.6e-251 874.4 1004 46.9
CDE07G0232 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.9e-223 781.2 959 44.9
Cpa.g.sc108.69 Carica papaya HOM05D004963 ORTHO05D006638 4.2e-215 753.4 1121 41.0
Ciclev10014326m.g Citrus clementina HOM05D004963 ORTHO05D006638 3.7e-211 740.3 777 51.4
ClCG10G013870 Citrullus lanatus HOM05D004963 ORTHO05D006638 6.1e-206 723.0 890 45.5
unitig_748.g6984 Utricularia gibba HOM05D004963 ORTHO05D006638 2.3e-181 641.3 493 64.5
DCAR_003836 Daucus carota HOM05D004963 ORTHO05D006638 9.6e-167 592.8 551 55.5
arahy.Tifrunner.gnm1.ann1.WBLX3G Arachis hypogaea HOM05D004963 ORTHO05D006638 1.3e-158 565.8 659 49.0
CARHR149540 Cardamine hirsuta HOM05D004963 ORTHO05D006638 9.9e-156 556.2 522 56.7
Hma1.2p1_0999F.1_g246170 Hydrangea macrophylla HOM05D004963 ORTHO05D006638 5.5e-138 497.3 525 52.6
MBI06_g10159_MAGBIO Magnolia biondii HOM05D004963 ORTHO05D006638 9.6e-135 486.5 398 60.8
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 7.7e-124 450.3 292 72.9
Os09g0565500 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 1.4e-122 446.0 657 42.0
Gohir.D09G029066 Gossypium hirsutum HOM05D004963 ORTHO05D006638 2.0e-111 409.1 452 48.5
Gorai.006G033900 Gossypium raimondii HOM05D004963 ORTHO05D006638 3.8e-107 394.8 432 48.6
HPP92_013426 Vanilla planifolia HOM05D004963 ORTHO05D006638 1.7e-99 369.4 856 31.2
Os09g0565450 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 7.7e-92 344.0 256 61.7
Cpa.g.sc108.68 Carica papaya HOM05D004963 ORTHO05D006638 1.1e-90 340.1 216 76.9
Carub.0007s0778 Capsella rubella HOM05D004963 ORTHO05D006638 1.4e-88 333.2 335 54.3
CDE07G2050 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 3.3e-82 312.0 395 42.5
Atru.chr6.2400 Acer truncatum HOM05D004963 ORTHO05D006638 2.3e-75 289.3 336 47.6
CSS0027009 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 1.8e-64 253.1 372 40.6
FAN11G1562 Fragaria x ananassa HOM05D004963 ORTHO05D006638 1.4e-53 216.9 232 50.0
VMungo1383G2035 Vigna mungo HOM05D004963 ORTHO05D006638 1.5e-50 206.8 293 42.3
CDE07G1094 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 6.2e-49 201.4 304 38.2
FvH4_3g31750 Fragaria vesca HOM05D004963 ORTHO05D006638 5.1e-43 181.8 196 51.5
FAN09G2859 Fragaria x ananassa HOM05D004963 ORTHO05D006638 2.5e-42 179.5 237 46.4
FvH4_4g00580 Fragaria vesca HOM05D004963 ORTHO05D006638 1.1e-40 174.1 196 49.5
SEGI_28921 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 1.1e-40 174.1 293 38.9
CBR_g4854 Chara braunii HOM05D004963 ORTHO05D006638 4.9e-38 165.2 521 28.6
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 5.4e-37 161.8 164 49.4
Psat2g110360 Pisum sativum HOM05D002628 ORTHO05D002785 1.8e-32 146.7 329 34.3
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 2.1e-28 133.3 95 66.3
C06p05790 Brassica napus HOM05D004963 ORTHO05D021908 6.7e-27 128.3 132 48.5
SEGI_35499 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 6.7e-27 128.3 145 47.6
C06p05800 Brassica napus HOM05D004963 ORTHO05D021908 4.3e-26 125.6 166 41.6
Ca_06838_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 1.3e-22 114.0 291 30.6
RcHm_v2.0_Chr5g0056391 Rosa chinensis HOM05D004963 ORTHO05D006638 8.4e-22 111.3 99 55.6
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 7.1e-21 108.2 290 30.3
Glyma.15G246500 Glycine max HOM05D004963 ORTHO05D006638 2.7e-20 106.3 224 32.6
FvH4_1g22462 Fragaria vesca HOM05D004963 ORTHO05D006638 1.5e-18 100.5 116 46.6
FAN02G1996 Fragaria x ananassa HOM05D004963 ORTHO05D006638 4.3e-18 99.0 153 41.8
BcaC08g43235 Brassica carinata HOM05D004963 ORTHO05D021908 6.9e-16 91.7 105 41.9
Psat5g059720 Pisum sativum HOM05D000434 ORTHO05D007220 1.2e-15 90.9 184 35.3
Thhalv10017271m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 2.0e-15 90.1 113 38.1
CDE07G0302 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 2.6e-15 89.7 169 36.7
PGR083G1349 Punica granatum HOM05D004963 ORTHO05D006638 2.6e-15 89.7 156 36.5
Thhalv10017254m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 4.5e-15 89.0 142 35.2
Thhalv10017260m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 4.5e-15 89.0 75 52.0
Zm00001eb387740 Zea mays HOM05D004963 ORTHO05D006638 4.5e-15 89.0 89 46.1
Aqoxy5G03772 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 2.2e-14 86.7 130 42.3
Zm00001eb027130 Zea mays HOM05D004963 ORTHO05D006638 3.8e-14 85.9 205 30.7
Actinidia36871 Actinidia chinensis HOM05D004963 ORTHO05D006638 1.2e-12 80.9 100 43.0
A02p14020 Brassica napus HOM05D015603 ORTHO05D017573 2.1e-12 80.1 150 32.7
BraA02t06462Z Brassica rapa HOM05D015603 ORTHO05D017573 3.9e-11 75.9 150 32.0
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 3.9e-11 75.9 86 44.2
Zm00001eb119700 Zea mays HOM05D004963 ORTHO05D006638 1.1e-10 74.3 74 45.9
Psat0s4196g0080 Pisum sativum HOM05D004963 ORTHO05D006638 2.5e-10 73.2 51 62.7
Cpa.g.c33664.1 Carica papaya HOM05D004963 ORTHO05D006638 4.3e-10 72.4 53 60.4
C02p22570 Brassica napus HOM05D015603 ORTHO05D017573 1.3e-09 70.9 151 31.8
BolC2t08411H Brassica oleracea HOM05D015603 ORTHO05D017573 2.4e-08 66.6 142 33.1
Hund10088 Selenicereus undatus HOM05D004963 ORTHO05D006638 1.2e-07 64.3 94 38.3
Zm00001eb150600 Zea mays HOM05D004963 ORTHO05D006638 5.9e-07 62.0 91 36.3
Actinidia27518 Actinidia chinensis HOM05D001993 ORTHO05D030912 3.8e-06 59.3 46 58.7
Actinidia30715 Actinidia chinensis HOM05D004963 ORTHO05D006638 6.5e-06 58.5 105 36.2


User provided reference genes

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