Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g01360 Coffea canephora HOM05D004735 ORTHO05D005243 8.9e-113 410.2 199 100.0
Dinv25616 Davidia involucrata HOM05D004735 ORTHO05D005243 4.1e-57 225.3 202 55.9
Hma1.2p1_0421F.1_g149860 Hydrangea macrophylla HOM05D004735 ORTHO05D005243 2.6e-56 222.6 202 55.0
Peaxi162Scf00420g00844 Petunia axillaris HOM05D004735 ORTHO05D005243 3.7e-50 202.2 199 51.3
Nitab4.5_0000519g0300 Nicotiana tabacum HOM05D004735 ORTHO05D005243 1.2e-48 197.2 199 51.3
Nitab4.5_0002172g0170 Nicotiana tabacum HOM05D004735 ORTHO05D005243 1.2e-48 197.2 199 50.8
Actinidia37716 Actinidia chinensis HOM05D004735 ORTHO05D005243 2.6e-48 196.1 202 51.0
Lj7A617T74 Lonicera japonica HOM05D004735 ORTHO05D005243 6.5e-47 191.4 213 48.4
QL02p069299 Quercus lobata HOM05D004735 ORTHO05D005243 8.5e-47 191.0 203 49.3
RcHm_v2.0_Chr2g0176561 Rosa chinensis HOM05D004735 ORTHO05D005243 3.2e-46 189.1 200 49.0
CAN.G473.160 Capsicum annuum HOM05D004735 ORTHO05D005243 4.2e-46 188.7 199 49.2
Dinv33274 Davidia involucrata HOM05D004735 ORTHO05D005243 4.2e-46 188.7 173 57.2
Sopen02g039210 Solanum pennellii HOM05D004735 ORTHO05D005243 4.7e-45 185.3 199 48.2
PGSC0003DMG400020237 Solanum tuberosum HOM05D004735 ORTHO05D005243 6.1e-45 184.9 199 48.2
Oeu035383.1 Olea europaea HOM05D004735 ORTHO05D005243 2.3e-44 183.0 200 51.5
Rhsim08G0038800 Rhododendron simsii HOM05D004735 ORTHO05D005243 3.0e-44 182.6 201 48.3
Solyc02g094540.4 Solanum lycopersicum HOM05D004735 ORTHO05D005243 3.0e-44 182.6 199 47.7
Prupe.3G314000 Prunus persica HOM05D004735 ORTHO05D005243 1.2e-43 180.6 199 45.7
Cfa007143 Carpinus fangiana HOM05D004735 ORTHO05D005243 5.7e-43 178.3 200 46.5
FAN02G4354 Fragaria x ananassa HOM05D004735 ORTHO05D005243 5.7e-43 178.3 200 45.5
FAN09G0836 Fragaria x ananassa HOM05D004735 ORTHO05D005243 1.3e-42 177.2 200 44.0
FAN14G4878 Fragaria x ananassa HOM05D004735 ORTHO05D005243 1.3e-42 177.2 200 44.0
vmacro18383 Vaccinium macrocarpon HOM05D004735 ORTHO05D005243 1.3e-42 177.2 200 49.5
Haze_14980 Corylus avellana HOM05D004735 ORTHO05D005243 1.7e-42 176.8 200 46.5
FAN05G2416 Fragaria x ananassa HOM05D004735 ORTHO05D005243 1.7e-42 176.8 200 45.0
CSS0022550 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 2.2e-42 176.4 211 47.9
FvH4_6g54340 Fragaria vesca HOM05D004735 ORTHO05D005243 1.4e-41 173.7 200 43.5
Atru.chr6.2700 Acer truncatum HOM05D004735 ORTHO05D005243 3.5e-40 169.1 199 42.2
MSTRG.24121 Avicennia marina HOM05D004735 ORTHO05D005243 3.5e-40 169.1 200 43.0
Duzib147G0188 Durio zibethinus HOM05D004735 ORTHO05D005243 4.5e-40 168.7 203 45.8
Duzib187G1028 Durio zibethinus HOM05D004735 ORTHO05D005243 4.5e-40 168.7 205 45.9
MD17G1006400 Malus domestica HOM05D004735 ORTHO05D005243 2.2e-39 166.4 198 42.9
Duzib264G0086 Durio zibethinus HOM05D004735 ORTHO05D005243 2.9e-39 166.0 203 45.3
SalBow4G2972 Salvia bowleyana HOM05D004735 ORTHO05D005243 6.5e-39 164.9 208 46.6
CiPaw.03G001400 Carya illinoinensis HOM05D004735 ORTHO05D005243 5.5e-38 161.8 200 42.0
Sabra02G0181300 Salix brachista HOM05D004735 ORTHO05D005243 7.2e-38 161.4 214 40.7
VMungo0464G0888 Vigna mungo HOM05D004735 ORTHO05D005243 9.4e-38 161.0 228 36.4
Cpa.g.sc70.59 Carica papaya HOM05D004735 ORTHO05D005243 1.2e-37 160.6 200 43.5
Lalb_Chr21g0316971 Lupinus albus HOM05D004735 ORTHO05D005243 4.7e-37 158.7 207 39.1
COL.COLO4_13380 Corchorus olitorius HOM05D004735 ORTHO05D005243 8.0e-37 157.9 206 42.2
TWI32G0607 Tripterygium wilfordii HOM05D004735 ORTHO05D005243 1.0e-36 157.5 200 42.0
Ciclev10014280m.g Citrus clementina HOM05D004735 ORTHO05D005243 1.4e-36 157.1 200 40.0
EL10Ac3g06356 Beta vulgaris HOM05D004735 ORTHO05D005243 3.0e-36 156.0 203 43.3
Eucgr.G01927 Eucalyptus grandis HOM05D004735 ORTHO05D005243 4.0e-36 155.6 202 42.1
Thecc.04G048500 Theobroma cacao HOM05D004735 ORTHO05D005243 1.2e-35 154.1 206 42.7
Potri.002G237800 Populus trichocarpa HOM05D004735 ORTHO05D005243 1.5e-35 153.7 213 39.9
Lalb_Chr02g0156851 Lupinus albus HOM05D004735 ORTHO05D005243 2.6e-35 152.9 205 38.0
MD09G1002200 Malus domestica HOM05D004735 ORTHO05D005243 2.6e-35 152.9 198 40.4
AUR62038220 Chenopodium quinoa HOM05D004735 ORTHO05D005243 3.4e-35 152.5 205 43.9
Sc03g0005270 Simmondsia chinensis HOM05D004735 ORTHO05D005243 3.4e-35 152.5 205 42.9
AUR62030086 Chenopodium quinoa HOM05D004735 ORTHO05D005243 4.4e-35 152.1 205 42.4
CiPaw.04G001000 Carya illinoinensis HOM05D004735 ORTHO05D005243 7.5e-35 151.4 202 42.1
Potri.014G144100 Populus trichocarpa HOM05D004735 ORTHO05D005243 9.8e-35 151.0 214 40.2
CANSAT64G0702 Cannabis sativa HOM05D004735 ORTHO05D005243 1.7e-34 150.2 206 41.7
Glyma.16G147800 Glycine max HOM05D004735 ORTHO05D005243 3.7e-34 149.1 236 33.1
Gohir.A11G063900 Gossypium hirsutum HOM05D004735 ORTHO05D005243 3.7e-34 149.1 203 43.8
Gorai.007G073000 Gossypium raimondii HOM05D004735 ORTHO05D005243 3.7e-34 149.1 203 43.3
Nn4g22117 Nelumbo nucifera HOM05D004735 ORTHO05D005243 3.7e-34 149.1 203 41.4
Manes.11G076100 Manihot esculenta HOM05D004735 ORTHO05D005243 4.8e-34 148.7 199 41.2
Hund12196 Selenicereus undatus HOM05D004735 ORTHO05D005243 4.8e-34 148.7 203 42.4
Sabra14G0108800 Salix brachista HOM05D004735 ORTHO05D005243 6.3e-34 148.3 214 39.7
TWI60G1686 Tripterygium wilfordii HOM05D004735 ORTHO05D005243 2.4e-33 146.4 200 39.5
Gohir.D11G068200 Gossypium hirsutum HOM05D004735 ORTHO05D005243 3.1e-33 146.0 203 42.9
Lj2g0010549 Lotus japonicus HOM05D004735 ORTHO05D005243 4.1e-33 145.6 221 35.7
Lalb_Chr22g0359831 Lupinus albus HOM05D004735 ORTHO05D005243 4.1e-33 145.6 202 38.6
Oeu035273.1 Olea europaea HOM05D004735 ORTHO05D005243 5.4e-33 145.2 225 40.9
TAR629G0422 Trochodendron aralioides HOM05D004735 ORTHO05D005243 5.4e-33 145.2 202 40.1
Ca_08203_v3 Cicer arietinum L. HOM05D004735 ORTHO05D005243 7.0e-33 144.8 200 36.5
Psat3g093080 Pisum sativum HOM05D004735 ORTHO05D005243 2.0e-32 143.3 200 35.5
arahy.Tifrunner.gnm1.ann1.HAHJ6R Arachis hypogaea HOM05D004735 ORTHO05D005243 3.5e-32 142.5 208 38.0
ClCG01G007860 Citrullus lanatus HOM05D004735 ORTHO05D005243 1.0e-31 141.0 207 37.7
arahy.Tifrunner.gnm1.ann1.X964XN Arachis hypogaea HOM05D004735 ORTHO05D005243 1.7e-31 140.2 208 37.5
Ca_16589_v3 Cicer arietinum L. HOM05D004735 ORTHO05D005243 1.7e-31 140.2 210 36.2
Manes.04G093600 Manihot esculenta HOM05D004735 ORTHO05D005243 3.8e-31 139.0 199 37.7
Psat0s787g0080 Pisum sativum HOM05D004735 ORTHO05D005243 5.0e-31 138.7 209 37.3
MELO3C005100.2 Cucumis melo HOM05D004735 ORTHO05D005243 6.5e-31 138.3 209 38.8
Ah.07g203970 Amaranthus hybridus HOM05D004735 ORTHO05D005243 8.5e-31 137.9 200 41.0
CsaV3_5G024940 Cucumis sativus L. HOM05D004735 ORTHO05D005243 2.5e-30 136.3 209 38.3
Sed0022562 Sechium edule HOM05D004735 ORTHO05D005243 7.2e-30 134.8 201 36.8
Migut.F00010 Erythranthe guttata HOM05D004735 ORTHO05D005243 9.5e-30 134.4 207 44.4
Ah.13g074210 Amaranthus hybridus HOM05D004735 ORTHO05D005243 3.6e-29 132.5 197 42.1
Lj1g0021966 Lotus japonicus HOM05D004735 ORTHO05D005243 3.6e-29 132.5 205 34.1
Medtr6g033235 Medicago truncatula HOM05D004735 ORTHO05D005243 6.1e-29 131.7 211 34.6
Medtr7g084170 Medicago truncatula HOM05D004735 ORTHO05D005243 1.0e-28 131.0 200 32.5
Glyma.02G066700 Glycine max HOM05D004735 ORTHO05D005243 1.8e-28 130.2 202 34.2
TPR.G30897 Trifolium pratense HOM05D004735 ORTHO05D005243 2.0e-27 126.7 226 33.6
TPR.G15417 Trifolium pratense HOM05D004735 ORTHO05D005243 3.7e-26 122.5 244 27.5
Phvul.004G069600 Phaseolus vulgaris HOM05D004735 ORTHO05D005243 1.1e-25 120.9 242 28.1
DCAR_014465 Daucus carota HOM05D004735 ORTHO05D005243 1.8e-25 120.2 207 35.7
Gorai.011G088500 Gossypium raimondii HOM05D004735 ORTHO05D005243 4.5e-24 115.5 211 38.4
Gohir.D10G081300 Gossypium hirsutum HOM05D004735 ORTHO05D005243 5.9e-24 115.2 211 37.9
Gohir.A10G069900 Gossypium hirsutum HOM05D004735 ORTHO05D005243 2.3e-23 113.2 211 37.9
THA.LOC104802362 Tarenaya hassleriana HOM05D004735 ORTHO05D005243 3.0e-20 102.8 213 31.0
Thhalv10012594m.g Eutrema salsugineum HOM05D004735 ORTHO05D005243 3.7e-18 95.9 217 30.4
MBI07_g13942_MAGBIO Magnolia biondii HOM05D004735 ORTHO05D005243 3.7e-18 95.9 201 33.3
Sp6g30050 Schrenkiella parvula HOM05D004735 ORTHO05D005243 5.4e-17 92.0 217 29.0
Carub.0006s1214 Capsella rubella HOM05D004735 ORTHO05D005243 2.7e-16 89.7 219 30.1
AL6G24610 Arabidopsis lyrata HOM05D004735 ORTHO05D005243 2.3e-15 86.7 220 30.0
PSO478G1205 Papaver somniferum HOM05D004735 ORTHO05D005243 6.6e-15 85.1 205 26.8
AT5G13950 Arabidopsis thaliana HOM05D004735 ORTHO05D005243 1.1e-14 84.3 219 29.2
BcaC04g19065 Brassica carinata HOM05D004735 ORTHO05D005243 4.3e-14 82.4 216 28.7
BolC9t59152H Brassica oleracea HOM05D004735 ORTHO05D005243 4.3e-14 82.4 216 28.7
PSO017G6705 Papaver somniferum HOM05D004735 ORTHO05D005243 5.6e-14 82.0 205 26.3
C09p63170 Brassica napus HOM05D004735 ORTHO05D005243 2.1e-13 80.1 216 28.2
A10p24440 Brassica napus HOM05D004735 ORTHO05D005243 2.8e-13 79.7 215 27.9
BraA10t44508Z Brassica rapa HOM05D000139 ORTHO05D005243 2.8e-13 79.7 215 27.9
A03p06300 Brassica napus HOM05D004735 ORTHO05D005243 8.0e-13 78.2 212 28.8
BraA03t09961Z Brassica rapa HOM05D004735 ORTHO05D005243 8.0e-13 78.2 212 28.8
Lsat_1_v5_gn_3_104900 Lactuca sativa HOM05D004735 ORTHO05D005243 1.1e-12 77.8 191 33.0
CARHR199450 Cardamine hirsuta HOM05D004735 ORTHO05D005243 1.4e-12 77.4 215 26.5
BolC3t13230H Brassica oleracea HOM05D004735 ORTHO05D005243 8.9e-12 74.7 209 29.7
C03p07280 Brassica napus HOM05D004735 ORTHO05D005243 1.2e-11 74.3 209 29.7
THA.LOC104821139 Tarenaya hassleriana HOM05D004735 ORTHO05D005243 4.4e-11 72.4 215 27.0
BcaB01g05325 Brassica carinata HOM05D004735 ORTHO05D005243 2.9e-10 69.7 198 29.3
GSVIVG01032979001 Vitis vinifera HOM05D004735 ORTHO05D005243 6.4e-10 68.6 72 47.2
unitig_0.g1643 Utricularia gibba HOM05D004735 ORTHO05D005243 1.9e-09 67.0 143 30.8
HanXRQChr15g0475721 Helianthus annuus HOM05D004735 ORTHO05D005243 5.4e-09 65.5 196 34.2
Oeu062522.1 Olea europaea HOM05D004735 ORTHO05D005243 7.0e-09 65.1 149 33.6
PGR042G1405 Punica granatum HOM05D004735 ORTHO05D005243 2.7e-08 63.2 178 32.0


User provided reference genes

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