Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g01350 Coffea canephora HOM05D004735 ORTHO05D005243 5.9e-308 1060.1 545 100.0
Dinv25616 Davidia involucrata HOM05D004735 ORTHO05D005243 2.9e-105 386.7 503 45.7
Dinv33275 Davidia involucrata HOM05D004735 ORTHO05D005243 1.1e-104 384.8 498 46.2
Oeu035383.1 Olea europaea HOM05D004735 ORTHO05D005243 1.1e-99 368.2 497 44.1
Actinidia37716 Actinidia chinensis HOM05D004735 ORTHO05D005243 1.8e-91 340.9 511 41.9
Hma1.2p1_0421F.1_g149860 Hydrangea macrophylla HOM05D004735 ORTHO05D005243 5.5e-88 329.3 499 40.7
Migut.F00010 Erythranthe guttata HOM05D004735 ORTHO05D005243 1.4e-86 324.7 524 40.1
SalBow4G2972 Salvia bowleyana HOM05D004735 ORTHO05D005243 2.3e-86 323.9 522 38.5
CSS0022550 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 1.1e-85 321.6 491 42.2
vmacro18383 Vaccinium macrocarpon HOM05D004735 ORTHO05D005243 3.7e-84 316.6 503 39.8
DCAR_014465 Daucus carota HOM05D004735 ORTHO05D005243 6.5e-81 305.8 494 39.3
Thecc.04G048500 Theobroma cacao HOM05D004735 ORTHO05D005243 7.9e-79 298.9 498 39.2
Lj7A617T74 Lonicera japonica HOM05D004735 ORTHO05D005243 1.0e-78 298.5 414 43.2
GSVIVG01032979001 Vitis vinifera HOM05D004735 ORTHO05D005243 5.1e-78 296.2 491 38.5
Duzib264G0086 Durio zibethinus HOM05D004735 ORTHO05D005243 7.4e-77 292.4 493 39.1
Cfa007143 Carpinus fangiana HOM05D004735 ORTHO05D005243 9.1e-75 285.4 513 37.0
MSTRG.24121 Avicennia marina HOM05D004735 ORTHO05D005243 2.0e-74 284.3 499 37.3
Atru.chr6.2700 Acer truncatum HOM05D004735 ORTHO05D005243 3.5e-74 283.5 502 39.0
Haze_14980 Corylus avellana HOM05D004735 ORTHO05D005243 3.5e-74 283.5 542 36.2
Duzib147G0188 Durio zibethinus HOM05D004735 ORTHO05D005243 1.1e-72 278.5 498 39.2
Rhsim08G0038800 Rhododendron simsii HOM05D004735 ORTHO05D005243 1.1e-72 278.5 461 38.4
Sabra02G0181300 Salix brachista HOM05D004735 ORTHO05D005243 2.5e-72 277.3 509 39.3
Gorai.007G073000 Gossypium raimondii HOM05D004735 ORTHO05D005243 2.0e-69 267.7 498 37.1
Nn4g22117 Nelumbo nucifera HOM05D004735 ORTHO05D005243 2.0e-69 267.7 495 37.6
Potri.002G237800 Populus trichocarpa HOM05D004735 ORTHO05D005243 2.6e-69 267.3 495 37.8
Duzib187G1028 Durio zibethinus HOM05D004735 ORTHO05D005243 7.4e-69 265.8 501 37.3
SGA_v2.0_scaffold423G51443 Striga asiatica HOM05D004735 ORTHO05D005243 7.4e-69 265.8 493 37.1
Potri.014G144100 Populus trichocarpa HOM05D004735 ORTHO05D005243 1.3e-68 265.0 501 37.7
Gohir.D11G068200 Gossypium hirsutum HOM05D004735 ORTHO05D005243 3.7e-68 263.5 498 36.7
Gohir.A10G069900 Gossypium hirsutum HOM05D004735 ORTHO05D005243 6.3e-68 262.7 500 35.8
Gohir.A11G063833 Gossypium hirsutum HOM05D004735 ORTHO05D005243 6.3e-68 262.7 498 36.3
Prupe.3G314000 Prunus persica HOM05D004735 ORTHO05D005243 6.3e-68 262.7 498 39.0
Ciclev10014280m.g Citrus clementina HOM05D004735 ORTHO05D005243 1.4e-67 261.5 549 34.6
CiPaw.03G001400 Carya illinoinensis HOM05D004735 ORTHO05D005243 3.1e-67 260.4 504 35.9
Manes.04G093600 Manihot esculenta HOM05D004735 ORTHO05D005243 4.1e-67 260.0 519 36.6
Nitab4.5_0000519g0300 Nicotiana tabacum HOM05D004735 ORTHO05D005243 4.5e-66 256.5 604 31.5
Gorai.011G088500 Gossypium raimondii HOM05D004735 ORTHO05D005243 3.8e-65 253.4 500 35.0
Oeu035273.1 Olea europaea HOM05D004735 ORTHO05D005243 3.8e-65 253.4 489 34.4
Manes.11G076100 Manihot esculenta HOM05D004735 ORTHO05D005243 6.5e-65 252.7 512 35.5
Sopen02g039210 Solanum pennellii HOM05D004735 ORTHO05D005243 6.5e-65 252.7 604 30.8
Gohir.D10G081300 Gossypium hirsutum HOM05D004735 ORTHO05D005243 1.5e-64 251.5 500 34.6
Sabra14G0108800 Salix brachista HOM05D004735 ORTHO05D005243 1.5e-64 251.5 500 37.0
CAN.G473.160 Capsicum annuum HOM05D004735 ORTHO05D005243 2.5e-64 250.8 629 30.5
FvH4_6g54340 Fragaria vesca HOM05D004735 ORTHO05D005243 1.6e-63 248.1 503 37.4
FAN09G0836 Fragaria x ananassa HOM05D004735 ORTHO05D005243 2.7e-63 247.3 503 37.4
FAN02G4354 Fragaria x ananassa HOM05D004735 ORTHO05D005243 4.7e-63 246.5 503 38.0
TAR629G0422 Trochodendron aralioides HOM05D004735 ORTHO05D005243 6.1e-63 246.1 505 36.6
CiPaw.04G001000 Carya illinoinensis HOM05D004735 ORTHO05D005243 1.0e-62 245.4 505 35.6
MD09G1002200 Malus domestica HOM05D004735 ORTHO05D005243 1.4e-62 245.0 501 37.3
FAN14G4878 Fragaria x ananassa HOM05D004735 ORTHO05D005243 3.0e-62 243.8 503 37.2
RcHm_v2.0_Chr2g0176561 Rosa chinensis HOM05D004735 ORTHO05D005243 5.2e-62 243.0 498 36.9
HanXRQChr17g0550891 Helianthus annuus HOM05D004735 ORTHO05D005243 1.5e-61 241.5 460 36.5
Lsat_1_v5_gn_3_104900 Lactuca sativa HOM05D004735 ORTHO05D005243 2.6e-61 240.7 474 35.9
FAN05G2416 Fragaria x ananassa HOM05D004735 ORTHO05D005243 3.3e-61 240.4 503 37.6
TAR371G0169 Trochodendron aralioides HOM05D004735 ORTHO05D008917 3.3e-61 240.4 265 47.5
QL02p069299 Quercus lobata HOM05D004735 ORTHO05D005243 3.7e-60 236.9 576 31.6
CANSAT64G0702 Cannabis sativa HOM05D004735 ORTHO05D005243 6.3e-60 236.1 505 34.7
Nitab4.5_0002172g0170 Nicotiana tabacum HOM05D004735 ORTHO05D005243 3.1e-59 233.8 567 31.0
HanXRQChr15g0475721 Helianthus annuus HOM05D004735 ORTHO05D005243 4.1e-59 233.4 453 35.8
TWI32G0607 Tripterygium wilfordii HOM05D004735 ORTHO05D005243 5.9e-58 229.6 499 34.7
Lj2g0010549 Lotus japonicus HOM05D004735 ORTHO05D005243 1.7e-57 228.0 497 35.4
Lj1g0021966 Lotus japonicus HOM05D004735 ORTHO05D005243 5.0e-57 226.5 498 34.3
Ca_16589_v3 Cicer arietinum L. HOM05D004735 ORTHO05D005243 8.5e-57 225.7 516 33.1
MD17G1006400 Malus domestica HOM05D004735 ORTHO05D005243 4.2e-56 223.4 501 35.5
VMungo0464G0888 Vigna mungo HOM05D004735 ORTHO05D005243 5.5e-56 223.0 546 32.2
Glyma.16G147800 Glycine max HOM05D004735 ORTHO05D005243 7.2e-56 222.6 558 31.7
Medtr6g033235 Medicago truncatula HOM05D004735 ORTHO05D005243 2.7e-55 220.7 542 32.7
TWI60G1686 Tripterygium wilfordii HOM05D004735 ORTHO05D005243 3.0e-54 217.2 499 33.3
ECA246G4565 Erigeron canadensis HOM05D004735 ORTHO05D005243 2.6e-53 214.2 465 32.5
Glyma.02G066700 Glycine max HOM05D004735 ORTHO05D005243 2.6e-53 214.2 546 31.9
Phvul.004G069600 Phaseolus vulgaris HOM05D004735 ORTHO05D005243 2.4e-51 207.6 552 31.3
Lalb_Chr02g0156851 Lupinus albus HOM05D004735 ORTHO05D005243 1.3e-49 201.8 270 42.2
arahy.Tifrunner.gnm1.ann1.X964XN Arachis hypogaea HOM05D004735 ORTHO05D005243 6.6e-49 199.5 521 30.9
CsaV3_5G024940 Cucumis sativus L. HOM05D004735 ORTHO05D005243 6.6e-49 199.5 316 38.9
AUR62030086 Chenopodium quinoa HOM05D004735 ORTHO05D005243 1.9e-48 198.0 294 40.8
THA.LOC104802362 Tarenaya hassleriana HOM05D004735 ORTHO05D005243 9.5e-48 195.7 554 31.2
AUR62038220 Chenopodium quinoa HOM05D004735 ORTHO05D005243 1.2e-47 195.3 294 39.8
Hund12196 Selenicereus undatus HOM05D004735 ORTHO05D005243 1.6e-47 194.9 573 28.8
MELO3C005100.2 Cucumis melo HOM05D004735 ORTHO05D005243 8.0e-47 192.6 280 40.7
EL10Ac3g06356 Beta vulgaris HOM05D004735 ORTHO05D005243 1.0e-46 192.2 599 27.5
arahy.Tifrunner.gnm1.ann1.HAHJ6R Arachis hypogaea HOM05D004735 ORTHO05D005243 1.5e-45 188.3 559 29.7
Lalb_Chr21g0316971 Lupinus albus HOM05D004735 ORTHO05D005243 2.6e-45 187.6 590 30.3
Eucgr.G01927 Eucalyptus grandis HOM05D004735 ORTHO05D005243 4.4e-45 186.8 566 29.0
Sed0022562 Sechium edule HOM05D004735 ORTHO05D005243 5.7e-45 186.4 500 33.6
Psat0s787g0080 Pisum sativum HOM05D004735 ORTHO05D005243 3.7e-44 183.7 494 32.4
Solyc02g094540.4 Solanum lycopersicum HOM05D004735 ORTHO05D005243 3.7e-44 183.7 491 31.0
BolC9t59152H Brassica oleracea HOM05D004735 ORTHO05D005243 4.9e-44 183.3 261 37.9
Sc03g0005270 Simmondsia chinensis HOM05D004735 ORTHO05D005243 8.3e-44 182.6 549 30.6
Cpa.g.sc70.59 Carica papaya HOM05D004735 ORTHO05D005243 1.8e-43 181.4 533 30.0
COL.COLO4_13380 Corchorus olitorius HOM05D004735 ORTHO05D005243 5.4e-43 179.9 395 34.4
MBI07_g13942_MAGBIO Magnolia biondii HOM05D004735 ORTHO05D005243 7.0e-43 179.5 494 30.2
Ca_08203_v3 Cicer arietinum L. HOM05D004735 ORTHO05D005243 9.2e-43 179.1 273 39.6
Sp6g30050 Schrenkiella parvula HOM05D004735 ORTHO05D005243 4.5e-42 176.8 528 29.9
TPR.G15417 Trifolium pratense HOM05D004735 ORTHO05D005243 1.7e-41 174.9 540 27.8
Aa31LG11G15430 Aethionema arabicum HOM05D004735 ORTHO05D005243 3.9e-41 173.7 545 29.2
Thhalv10012594m.g Eutrema salsugineum HOM05D004735 ORTHO05D005243 5.0e-41 173.3 308 36.0
A10p24440 Brassica napus HOM05D004735 ORTHO05D005243 1.5e-40 171.8 500 31.6
Peaxi162Scf00420g00844 Petunia axillaris HOM05D004735 ORTHO05D005243 1.9e-40 171.4 534 27.9
C03p07280 Brassica napus HOM05D004735 ORTHO05D005243 2.5e-40 171.0 490 31.6
Carub.0006s1214 Capsella rubella HOM05D004735 ORTHO05D005243 3.3e-40 170.6 541 30.1
Ah.13g074210 Amaranthus hybridus HOM05D004735 ORTHO05D005243 4.3e-40 170.2 273 38.5
C09p63170 Brassica napus HOM05D004735 ORTHO05D005243 9.5e-40 169.1 507 29.6
BcaB01g05325 Brassica carinata HOM05D004735 ORTHO05D005243 1.2e-39 168.7 324 35.5
BolC3t13230H Brassica oleracea HOM05D004735 ORTHO05D005243 1.0e-38 165.6 490 31.0
Psat3g093080 Pisum sativum HOM05D004735 ORTHO05D005243 1.0e-38 165.6 529 29.5
CARHR199450 Cardamine hirsuta HOM05D004735 ORTHO05D005243 2.3e-38 164.5 525 28.6
Gohir.A11G063900 Gossypium hirsutum HOM05D004735 ORTHO05D005243 2.3e-38 164.5 348 35.1
PSO017G6705 Papaver somniferum HOM05D004735 ORTHO05D005243 1.2e-37 162.2 500 28.6
AT5G13950 Arabidopsis thaliana HOM05D004735 ORTHO05D005243 2.0e-37 161.4 526 29.7
Medtr7g084170 Medicago truncatula HOM05D004735 ORTHO05D005243 3.4e-37 160.6 525 28.8
AL6G24610 Arabidopsis lyrata HOM05D004735 ORTHO05D005243 2.2e-36 157.9 260 35.8
PSO478G1205 Papaver somniferum HOM05D004735 ORTHO05D005243 3.7e-36 157.1 500 28.0
THA.LOC104821139 Tarenaya hassleriana HOM05D004735 ORTHO05D005243 4.9e-36 156.8 577 28.2
CDE06G2773 Ceratophyllum demersum HOM05D004735 ORTHO05D005243 6.4e-36 156.4 259 35.1
CSS0011678 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 4.1e-35 153.7 139 56.8
PGR042G1405 Punica granatum HOM05D004735 ORTHO05D005243 1.2e-34 152.1 533 28.5
ClCG01G007860 Citrullus lanatus HOM05D004735 ORTHO05D005243 8.6e-33 146.0 519 28.1
Ah.07g203970 Amaranthus hybridus HOM05D004735 ORTHO05D005243 1.5e-29 135.2 529 27.6
CDE02G2610 Ceratophyllum demersum HOM05D004735 ORTHO05D005243 9.8e-29 132.5 238 34.0
ATR0582G141 Amborella trichopoda HOM05D004735 ORTHO05D005243 1.3e-28 132.1 276 31.9
unitig_0.g1642 Utricularia gibba HOM05D004735 ORTHO05D005243 8.3e-28 129.4 445 28.3
Lalb_Chr22g0359831 Lupinus albus HOM05D004735 ORTHO05D005243 1.6e-26 125.2 346 30.6
CSS0009912 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 3.5e-26 124.0 95 63.2
TPR.G30897 Trifolium pratense HOM05D004735 ORTHO05D005243 1.3e-25 122.1 164 41.5
Actinidia19551 Actinidia chinensis HOM05D004735 ORTHO05D005243 6.4e-20 103.2 95 50.5
TPR.G28482 Trifolium pratense HOM05D004735 ORTHO05D005243 6.4e-20 103.2 97 57.7
Zm00001eb307010 Zea mays HOM05D004735 ORTHO05D005243 1.4e-19 102.1 255 29.0
Psat7g164720 Pisum sativum HOM05D000121 ORTHO05D000102 5.4e-19 100.1 88 56.8
Gohir.A11G063866 Gossypium hirsutum HOM05D004735 ORTHO05D005243 4.6e-18 97.1 67 58.2
PGSC0003DMG400020237 Solanum tuberosum HOM05D004735 ORTHO05D005243 4.6e-18 97.1 190 34.2
BraA10t44508Z Brassica rapa HOM05D000139 ORTHO05D005243 6.0e-18 96.7 357 32.2
BolC2t06598H Brassica oleracea HOM05D000139 ORTHO05D000103 1.6e-15 88.6 81 54.3
CSS0050200 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 4.7e-15 87.0 67 52.2
C02p06510 Brassica napus HOM05D000139 ORTHO05D000103 6.2e-15 86.7 81 53.1
Solyc02g094530.1 Solanum lycopersicum HOM05D004735 ORTHO05D005243 8.1e-15 86.3 66 51.5
Lalb_Chr22g0359841 Lupinus albus HOM05D004735 ORTHO05D005243 1.1e-14 85.9 66 54.5
CSS0009135 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 1.8e-14 85.1 67 52.2
CSS0035487 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 6.8e-14 83.2 66 51.5
Peaxi162Scf00420g00843 Petunia axillaris HOM05D004735 ORTHO05D005243 2.6e-13 81.3 64 51.6
CSS0016869 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 3.8e-12 77.4 89 50.6
SEGI_21903 Sequoiadendron giganteum HOM05D004735 ORTHO05D005243 3.8e-12 77.4 62 50.0
SHI13679 Sapria himalayana HOM05D004735 ORTHO05D005243 6.2e-07 60.1 40 60.0


User provided reference genes

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