Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g01330 Coffea canephora HOM05D006396 ORTHO05D008172 2.8e-160 568.5 289 100.0
GSVIVG01032980001 Vitis vinifera HOM05D006396 ORTHO05D008172 3.8e-88 328.9 254 70.5
QL02p069325 Quercus lobata HOM05D006396 ORTHO05D008172 4.2e-87 325.5 269 67.7
COL.COLO4_13379 Corchorus olitorius HOM05D006396 ORTHO05D008172 5.5e-87 325.1 271 68.6
Thecc.04G048300 Theobroma cacao HOM05D006396 ORTHO05D008172 9.4e-87 324.3 285 65.6
Manes.11G076200 Manihot esculenta HOM05D006396 ORTHO05D008172 1.2e-86 323.9 253 70.0
Cfa007142 Carpinus fangiana HOM05D006396 ORTHO05D008172 1.6e-86 323.6 259 69.9
Nn4g22123 Nelumbo nucifera HOM05D006396 ORTHO05D008172 1.6e-86 323.6 264 67.8
Dinv33276 Davidia involucrata HOM05D006396 ORTHO05D008172 2.1e-86 323.2 290 64.8
Cpa.g.sc70.60 Carica papaya HOM05D006396 ORTHO05D008172 3.6e-86 322.4 257 68.1
RcHm_v2.0_Chr2g0176531 Rosa chinensis HOM05D006396 ORTHO05D008172 1.4e-85 320.5 255 67.8
TAR622G0848 Trochodendron aralioides HOM05D006396 ORTHO05D008172 1.4e-85 320.5 264 69.7
Haze_14981 Corylus avellana HOM05D006396 ORTHO05D008172 3.0e-85 319.3 268 65.7
vmacro18382 Vaccinium macrocarpon HOM05D006396 ORTHO05D008172 3.9e-85 318.9 234 72.2
Actinidia37717 Actinidia chinensis HOM05D006396 ORTHO05D008172 5.1e-85 318.5 255 68.2
CiPaw.04G001100 Carya illinoinensis HOM05D006396 ORTHO05D008172 5.1e-85 318.5 265 66.4
Rhsim08G0038900 Rhododendron simsii HOM05D006396 ORTHO05D008172 5.1e-85 318.5 238 72.7
FAN14G4577 Fragaria x ananassa HOM05D006396 ORTHO05D008172 1.1e-84 317.4 261 65.9
FAN05G4097 Fragaria x ananassa HOM05D006396 ORTHO05D008172 2.5e-84 316.2 261 65.5
TWI39G0493 Tripterygium wilfordii HOM05D006396 ORTHO05D008172 2.5e-84 316.2 254 69.7
Solyc02g005210.3 Solanum lycopersicum HOM05D006396 ORTHO05D008172 3.3e-84 315.8 255 68.2
FAN09G2227 Fragaria x ananassa HOM05D006396 ORTHO05D008172 4.3e-84 315.5 261 65.5
Eucgr.I01598 Eucalyptus grandis HOM05D006396 ORTHO05D008172 1.3e-83 313.9 260 69.2
Oeu041974.1 Olea europaea HOM05D006396 ORTHO05D008172 1.3e-83 313.9 248 67.7
Sopen02g001100 Solanum pennellii HOM05D006396 ORTHO05D008172 1.3e-83 313.9 219 74.0
VMungo0464G1242 Vigna mungo HOM05D006396 ORTHO05D008172 1.3e-83 313.9 234 72.2
Gohir.A11G063800 Gossypium hirsutum HOM05D006396 ORTHO05D008172 1.7e-83 313.5 285 62.8
PGSC0003DMG400014532 Solanum tuberosum HOM05D006396 ORTHO05D008172 1.7e-83 313.5 255 65.9
ATR0582G370 Amborella trichopoda HOM05D006396 ORTHO05D008172 2.2e-83 313.2 189 82.5
Gohir.D11G068100 Gossypium hirsutum HOM05D006396 ORTHO05D008172 2.2e-83 313.2 279 62.7
Gorai.007G072900 Gossypium raimondii HOM05D006396 ORTHO05D008172 2.2e-83 313.2 279 62.7
PGR142G1470 Punica granatum HOM05D006396 ORTHO05D008172 2.2e-83 313.2 243 69.1
CSS0007606 Camellia sinensis var. sinensis HOM05D006396 ORTHO05D008172 2.8e-83 312.8 204 79.9
Ca_08202_v3 Cicer arietinum L. HOM05D006396 ORTHO05D008172 2.8e-83 312.8 235 70.6
Potri.001G463200 Populus trichocarpa HOM05D006396 ORTHO05D008172 2.8e-83 312.8 266 66.2
CANSAT21G0889 Cannabis sativa HOM05D006396 ORTHO05D008172 3.7e-83 312.4 268 66.4
SalBow1G8636 Salvia bowleyana HOM05D006396 ORTHO05D008172 4.8e-83 312.0 238 71.8
Ciclev10016116m.g Citrus clementina HOM05D006396 ORTHO05D008172 6.3e-83 311.6 263 66.9
Glyma.16G147700 Glycine max HOM05D006396 ORTHO05D008172 6.3e-83 311.6 271 63.8
MSTRG.15316 Avicennia marina HOM05D006396 ORTHO05D008172 1.1e-82 310.8 269 65.1
MD17G1006700 Malus domestica HOM05D006396 ORTHO05D008172 1.1e-82 310.8 189 84.1
CAN.G1108.4 Capsicum annuum HOM05D006396 ORTHO05D008172 1.8e-82 310.1 189 81.5
Nitab4.5_0000139g0180 Nicotiana tabacum HOM05D006396 ORTHO05D008172 1.8e-82 310.1 189 81.5
Sabra16G0314900 Salix brachista HOM05D006396 ORTHO05D008172 1.8e-82 310.1 272 64.3
Hma1.2p1_1389F.1_g279970 Hydrangea macrophylla HOM05D006396 ORTHO05D008172 2.4e-82 309.7 188 83.0
Lj7A617G76 Lonicera japonica HOM05D006396 ORTHO05D008172 2.4e-82 309.7 187 82.9
Lalb_Chr14g0364101 Lupinus albus HOM05D006396 ORTHO05D008172 2.4e-82 309.7 252 67.9
Sabra16G0313400 Salix brachista HOM05D006396 ORTHO05D008172 3.1e-82 309.3 272 65.4
MD09G1002500 Malus domestica HOM05D006396 ORTHO05D008172 4.1e-82 308.9 240 70.8
Hund12907 Selenicereus undatus HOM05D006396 ORTHO05D008172 5.3e-82 308.5 200 79.0
Nitab4.5_0005452g0030 Nicotiana tabacum HOM05D006396 ORTHO05D008172 6.9e-82 308.1 189 81.5
Phvul.004G069700 Phaseolus vulgaris HOM05D006396 ORTHO05D008172 6.9e-82 308.1 264 66.3
SGA_v2.0_scaffold174G39282 Striga asiatica HOM05D006396 ORTHO05D008172 6.9e-82 308.1 230 71.7
arahy.Tifrunner.gnm1.ann1.Q1FZEB Arachis hypogaea HOM05D006396 ORTHO05D008172 9.1e-82 307.8 263 65.0
HanXRQChr17g0550901 Helianthus annuus HOM05D006396 ORTHO05D008172 1.5e-81 307.0 268 65.7
Prupe.3G313700 Prunus persica HOM05D006396 ORTHO05D008172 2.6e-81 306.2 203 78.3
Sed0011277 Sechium edule HOM05D006396 ORTHO05D008172 2.6e-81 306.2 201 79.1
Atru.chr6.2699 Acer truncatum HOM05D006396 ORTHO05D008172 3.4e-81 305.8 194 78.9
ClCG01G007850 Citrullus lanatus HOM05D006396 ORTHO05D008172 3.4e-81 305.8 189 81.0
Ah.03g136630 Amaranthus hybridus HOM05D006396 ORTHO05D008172 4.5e-81 305.4 273 64.8
Lsat_1_v5_gn_3_104821 Lactuca sativa HOM05D006396 ORTHO05D008172 5.9e-81 305.1 260 65.4
ECA246G0184 Erigeron canadensis HOM05D006396 ORTHO05D008172 7.7e-81 304.7 199 80.9
Medtr7g084160 Medicago truncatula HOM05D006396 ORTHO05D008172 7.7e-81 304.7 187 80.7
arahy.Tifrunner.gnm1.ann1.P0PZ58 Arachis hypogaea HOM05D006396 ORTHO05D008172 1.0e-80 304.3 237 68.8
DCAR_014466 Daucus carota HOM05D006396 ORTHO05D008172 3.8e-80 302.4 223 70.4
Lj1g0009632 Lotus japonicus HOM05D006396 ORTHO05D008172 5.0e-80 302.0 266 65.4
BcaNung07107 Brassica carinata HOM05D006396 ORTHO05D008172 6.5e-80 301.6 238 68.9
C07p35740 Brassica napus HOM05D006396 ORTHO05D008172 6.5e-80 301.6 238 68.9
TPR.G15411 Trifolium pratense HOM05D006396 ORTHO05D008172 1.9e-79 300.1 235 68.9
CsaV3_5G024930 Cucumis sativus L. HOM05D006396 ORTHO05D008172 2.5e-79 299.7 198 76.8
Psat0s4148g0040 Pisum sativum HOM05D006396 ORTHO05D008172 2.5e-79 299.7 256 65.2
A06p41790 Brassica napus HOM05D006396 ORTHO05D008172 4.2e-79 298.9 238 68.5
BcaC06g31047 Brassica carinata HOM05D006396 ORTHO05D008172 7.2e-79 298.1 266 63.9
Sp2g15830 Schrenkiella parvula HOM05D006396 ORTHO05D008172 7.2e-79 298.1 227 70.0
AUR62017434 Chenopodium quinoa HOM05D006396 ORTHO05D008172 9.4e-79 297.7 194 77.8
Thhalv10004768m.g Eutrema salsugineum HOM05D006396 ORTHO05D008172 9.4e-79 297.7 227 70.5
Sc03g0005260 Simmondsia chinensis HOM05D006396 ORTHO05D008172 9.4e-79 297.7 188 79.3
Aa31LG2G5850 Aethionema arabicum HOM05D006396 ORTHO05D008172 1.2e-78 297.4 201 76.6
AUR62037820 Chenopodium quinoa HOM05D006396 ORTHO05D008172 1.2e-78 297.4 194 77.3
BolC7t44094H Brassica oleracea HOM05D006396 ORTHO05D008172 1.6e-78 297.0 238 68.1
THA.LOC104825656 Tarenaya hassleriana HOM05D006396 ORTHO05D008172 2.1e-78 296.6 190 77.4
unitig_32.g11883 Utricularia gibba HOM05D006396 ORTHO05D008172 3.6e-78 295.8 189 78.3
PSO478G0237 Papaver somniferum HOM05D006396 ORTHO05D008172 4.7e-78 295.4 193 77.7
C02p53250 Brassica napus HOM05D006396 ORTHO05D008172 7.9e-78 294.7 226 70.8
CARHR147730 Cardamine hirsuta HOM05D006396 ORTHO05D008172 1.4e-77 293.9 255 64.3
CDE05G2379 Ceratophyllum demersum HOM05D006396 ORTHO05D008172 1.4e-77 293.9 255 63.1
Glyma.02G066600 Glycine max HOM05D006396 ORTHO05D008172 2.3e-77 293.1 195 78.5
Zm00001eb198120 Zea mays HOM05D006396 ORTHO05D008172 3.0e-77 292.7 194 74.2
Os11g0526200 Oryza sativa ssp. japonica HOM05D006396 ORTHO05D008172 6.7e-77 291.6 197 73.6
Carub.0005s0471 Capsella rubella HOM05D006396 ORTHO05D008172 8.8e-77 291.2 255 63.5
BolC2t11397H Brassica oleracea HOM05D006396 ORTHO05D008172 1.5e-76 290.4 226 69.5
PSO017G3463 Papaver somniferum HOM05D006396 ORTHO05D008172 2.6e-76 289.7 192 77.1
Aqoxy5G03069 Aquilegia oxysepala HOM05D006396 ORTHO05D008172 4.4e-76 288.9 200 74.5
THA.LOC104805299 Tarenaya hassleriana HOM05D006396 ORTHO05D008172 7.4e-76 288.1 228 68.4
HPP92_009800 Vanilla planifolia HOM05D006396 ORTHO05D008172 7.4e-76 288.1 208 71.2
BraA02t08477Z Brassica rapa HOM05D006396 ORTHO05D008172 1.7e-75 287.0 191 77.5
AL5G15550 Arabidopsis lyrata HOM05D006396 ORTHO05D008172 2.8e-75 286.2 255 62.4
AT3G26710 Arabidopsis thaliana HOM05D006396 ORTHO05D008172 2.4e-74 283.1 255 63.1
Mapoly0054s0013 Marchantia polymorpha HOM05D006396 ORTHO05D008172 3.2e-71 272.7 201 65.2
CSS0000498 Camellia sinensis var. sinensis HOM05D006396 ORTHO05D008172 5.5e-71 271.9 241 65.1
EL10Ac6g13409 Beta vulgaris HOM05D006396 ORTHO05D008172 4.8e-67 258.8 279 57.0
Migut.L00475 Erythranthe guttata HOM05D006396 ORTHO05D008172 9.1e-66 254.6 201 68.2
CBR_g29738 Chara braunii HOM05D006396 ORTHO05D008172 1.3e-64 250.8 225 58.2
SMO146G0400 Selaginella moellendorffii HOM05D006396 ORTHO05D008172 1.7e-64 250.4 191 61.8
BcaC03g17380 Brassica carinata HOM05D006396 ORTHO05D008172 5.2e-61 238.8 190 70.0
Pp3c2_10260 Physcomitrium patens HOM05D006396 ORTHO05D008172 1.2e-60 237.7 201 58.2
FvH4_6g54310 Fragaria vesca HOM05D006396 ORTHO05D008172 9.4e-55 218.0 199 62.8
CDE05G2841 Ceratophyllum demersum HOM05D006396 ORTHO05D008172 3.4e-52 209.5 145 75.9
MELO3C005101.2 Cucumis melo HOM05D006396 ORTHO05D008172 1.2e-49 201.1 136 77.9
Duzib147G0670 Durio zibethinus HOM05D006396 ORTHO05D008172 3.5e-49 199.5 260 50.4
Peaxi162Scf00818g00123 Petunia axillaris HOM05D006396 ORTHO05D008172 2.5e-47 193.4 110 84.5
PRCOL_00002489 Prasinoderma coloniale HOM05D006396 ORTHO05D008172 3.3e-47 193.0 192 50.5
MCO04G060 Micromonas commoda HOM05D006396 ORTHO05D008172 2.8e-46 189.9 211 47.4
AagrBONN_evm.TU.Sc2ySwM_368.425 Anthoceros agrestis HOM05D006396 ORTHO05D008172 6.3e-43 178.7 149 61.1
SEGI_35956 Sequoiadendron giganteum HOM05D006396 ORTHO05D008172 4.1e-42 176.0 110 75.5
SGA_v2.0_scaffold174G39277 Striga asiatica HOM05D006396 ORTHO05D008172 1.3e-40 171.0 182 53.8
Cre16.g662150 Chlamydomonas reinhardtii HOM05D006396 ORTHO05D008172 3.1e-37 159.8 188 44.7
FAN02G1480 Fragaria x ananassa HOM05D006396 ORTHO05D008172 5.4e-26 122.5 148 54.1
SEGI_37491 Sequoiadendron giganteum HOM05D006396 ORTHO05D008172 9.5e-23 111.7 82 68.3
MD04G1090800 Malus domestica HOM05D006396 ORTHO05D008172 2.1e-14 84.0 50 82.0
BolC2t09342H Brassica oleracea HOM05D006396 ORTHO05D000401 4.4e-12 76.3 73 63.0
BolC1t02127H Brassica oleracea HOM05D000589 ORTHO05D000401 2.4e-10 70.5 169 39.6
Psat7g159680 Pisum sativum HOM05D006396 ORTHO05D008172 2.7e-09 67.0 44 68.2
A02p34690 Brassica napus HOM05D006396 ORTHO05D008172 7.8e-09 65.5 44 65.9


User provided reference genes

Program Settings