Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g01280 Coffea canephora HOM05D003379 ORTHO05D003862 1.0e-274 949.5 488 100.0
Dinv25618 Davidia involucrata HOM05D003379 ORTHO05D003862 2.7e-78 297.0 506 41.9
Rhsim08G0039200 Rhododendron simsii HOM05D003379 ORTHO05D003862 4.2e-71 273.1 501 40.9
TAR475G0001 Trochodendron aralioides HOM05D003379 ORTHO05D003862 3.0e-69 266.9 487 39.6
PGR142G1656 Punica granatum HOM05D003379 ORTHO05D003862 1.9e-68 264.2 494 40.9
Manes.11G076800 Manihot esculenta HOM05D003379 ORTHO05D003862 9.6e-68 261.9 500 38.2
TAR374G0325 Trochodendron aralioides HOM05D003379 ORTHO05D003862 4.0e-66 256.5 490 39.6
MELO3C014781.2 Cucumis melo HOM05D003379 ORTHO05D003862 3.4e-65 253.4 497 37.2
CsaV3_3G027780 Cucumis sativus L. HOM05D003379 ORTHO05D003862 5.8e-65 252.7 498 38.0
vmacro18379 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 1.1e-63 248.4 491 39.3
Actinidia36245 Actinidia chinensis HOM05D003379 ORTHO05D003862 1.2e-62 245.0 496 38.7
Cfa007165 Carpinus fangiana HOM05D003379 ORTHO05D003862 1.8e-61 241.1 494 38.3
ClCG05G012630 Citrullus lanatus HOM05D003379 ORTHO05D003862 1.8e-61 241.1 507 36.7
Haze_14949 Corylus avellana HOM05D003379 ORTHO05D003862 3.9e-61 240.0 492 38.4
MD09G1002700 Malus domestica HOM05D003379 ORTHO05D003862 8.7e-61 238.8 492 38.6
Potri.002G238100 Populus trichocarpa HOM05D003379 ORTHO05D003862 1.3e-59 235.0 493 37.5
Sed0002814 Sechium edule HOM05D003379 ORTHO05D003862 4.8e-59 233.0 500 34.6
QL02p069539 Quercus lobata HOM05D003379 ORTHO05D003862 6.3e-59 232.6 496 36.5
Sed0021165 Sechium edule HOM05D003379 ORTHO05D003862 8.2e-59 232.3 507 36.3
Dinv19304 Davidia involucrata HOM05D003379 ORTHO05D003862 1.4e-58 231.5 502 38.8
MD17G1006900 Malus domestica HOM05D003379 ORTHO05D003862 1.8e-58 231.1 494 36.2
Sabra02G0181500 Salix brachista HOM05D003379 ORTHO05D003862 3.1e-58 230.3 491 37.5
Atru.chr6.2693 Acer truncatum HOM05D003379 ORTHO05D003862 9.0e-58 228.8 486 36.8
CiPaw.04G001500 Carya illinoinensis HOM05D003379 ORTHO05D003862 2.0e-57 227.6 486 37.0
Lj7A617T72 Lonicera japonica HOM05D003379 ORTHO05D003862 2.6e-57 227.3 502 38.2
Ciclev10015333m.g Citrus clementina HOM05D003379 ORTHO05D003862 7.6e-57 225.7 492 37.0
Potri.014G143800 Populus trichocarpa HOM05D003379 ORTHO05D003862 1.3e-56 224.9 499 37.1
Duzib187G1855 Durio zibethinus HOM05D003379 ORTHO05D003862 2.9e-56 223.8 499 37.7
Cpa.g.sc70.68 Carica papaya HOM05D003379 ORTHO05D003862 6.5e-56 222.6 493 36.9
EL10Ac6g13403 Beta vulgaris HOM05D003379 ORTHO05D003862 1.1e-55 221.9 514 36.0
Dinv01473 Davidia involucrata HOM05D003379 ORTHO05D003862 1.2e-54 218.4 494 37.4
Prupe.3G313500 Prunus persica HOM05D003379 ORTHO05D003862 1.6e-54 218.0 500 36.2
Thecc.04G047800 Theobroma cacao HOM05D003379 ORTHO05D003862 2.7e-54 217.2 496 37.9
Lalb_Chr14g0364121 Lupinus albus HOM05D003379 ORTHO05D003862 8.7e-53 212.2 493 35.1
TWI32G0366 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 8.7e-53 212.2 494 36.2
MSTRG.2062 Avicennia marina HOM05D003379 ORTHO05D003862 1.1e-52 211.8 496 36.3
COL.COLO4_13374 Corchorus olitorius HOM05D003379 ORTHO05D003862 1.5e-52 211.5 512 36.1
VMungo1383G3656 Vigna mungo HOM05D003379 ORTHO05D003862 4.3e-52 209.9 485 34.8
Migut.E00693 Erythranthe guttata HOM05D003379 ORTHO05D003862 7.4e-52 209.1 511 36.0
Eucgr.I02446 Eucalyptus grandis HOM05D003379 ORTHO05D003862 1.3e-51 208.4 504 36.9
MBI07_g41898_MAGBIO Magnolia biondii HOM05D003379 ORTHO05D003862 8.2e-51 205.7 509 36.0
CiPaw.06G109000 Carya illinoinensis HOM05D003379 ORTHO05D003862 1.4e-50 204.9 489 34.6
AUR62017428 Chenopodium quinoa HOM05D003379 ORTHO05D003862 2.4e-50 204.1 419 37.7
FAN09G0861 Fragaria x ananassa HOM05D003379 ORTHO05D003862 4.1e-50 203.4 493 34.7
FAN14G1380 Fragaria x ananassa HOM05D003379 ORTHO05D003862 4.1e-50 203.4 491 34.6
Gohir.D07G239900 Gossypium hirsutum HOM05D003379 ORTHO05D003862 5.3e-50 203.0 500 35.6
QL03p049546 Quercus lobata HOM05D003379 ORTHO05D003862 5.3e-50 203.0 499 34.9
Phvul.001G084300 Phaseolus vulgaris HOM05D003379 ORTHO05D003862 6.9e-50 202.6 486 34.8
AUR62037825 Chenopodium quinoa HOM05D003379 ORTHO05D003862 1.2e-49 201.8 372 38.2
Gorai.001G276100 Gossypium raimondii HOM05D003379 ORTHO05D003862 2.0e-49 201.1 500 34.8
Ca_08145_v3 Cicer arietinum L. HOM05D003379 ORTHO05D003862 4.5e-49 199.9 491 35.2
Gohir.A07G232700 Gossypium hirsutum HOM05D003379 ORTHO05D003862 5.9e-49 199.5 500 35.0
Ah.03g136390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 1.0e-48 198.7 522 33.1
FvH4_6g54290 Fragaria vesca HOM05D003379 ORTHO05D003862 1.0e-48 198.7 495 34.7
Medtr7g084070 Medicago truncatula HOM05D003379 ORTHO05D003862 1.7e-48 198.0 464 34.7
Sabra03G0118600 Salix brachista HOM05D003379 ORTHO05D003862 1.7e-48 198.0 497 35.6
Hund04187 Selenicereus undatus HOM05D003379 ORTHO05D003862 2.2e-48 197.6 517 34.2
FAN05G5138 Fragaria x ananassa HOM05D003379 ORTHO05D003862 5.0e-48 196.4 493 33.5
Haze_12496 Corylus avellana HOM05D003379 ORTHO05D003862 9.4e-47 192.2 491 34.6
CSS0041611 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 7.9e-46 189.1 546 34.4
Glyma.19G103400 Glycine max HOM05D003379 ORTHO05D003862 7.9e-46 189.1 490 33.9
Sc03g0005220 Simmondsia chinensis HOM05D003379 ORTHO05D003862 1.4e-45 188.3 498 32.7
Glyma.16G047900 Glycine max HOM05D003379 ORTHO05D003862 1.8e-45 188.0 494 32.8
DCAR_002970 Daucus carota HOM05D003379 ORTHO05D003862 3.0e-45 187.2 482 33.0
Lsat_1_v5_gn_0_41321 Lactuca sativa HOM05D003379 ORTHO05D003862 6.7e-45 186.0 488 30.7
Potri.003G163100 Populus trichocarpa HOM05D003379 ORTHO05D003862 3.3e-44 183.7 500 33.6
Oeu027918.1 Olea europaea HOM05D003379 ORTHO05D003862 4.4e-44 183.3 496 33.9
Hma1.2p1_0787F.1_g217850 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 7.4e-44 182.6 494 35.0
PSO478G4908 Papaver somniferum HOM05D003379 ORTHO05D003862 7.4e-44 182.6 507 33.1
Nn4g22138 Nelumbo nucifera HOM05D003379 ORTHO05D003862 9.7e-44 182.2 352 39.5
PSO017G0829 Papaver somniferum HOM05D003379 ORTHO05D003862 1.3e-43 181.8 506 33.8
CDE05G1535 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 1.7e-43 181.4 488 34.4
Duzib147G0361 Durio zibethinus HOM05D003379 ORTHO05D003862 1.7e-43 181.4 423 37.1
Sopen02g036510 Solanum pennellii HOM05D003379 ORTHO05D003862 1.7e-43 181.4 494 33.4
arahy.Tifrunner.gnm1.ann1.M1DIX9 Arachis hypogaea HOM05D003379 ORTHO05D003862 2.8e-43 180.6 495 33.1
C09p63160 Brassica napus HOM05D003379 ORTHO05D003862 1.4e-42 178.3 488 33.6
BolC9t59151H Brassica oleracea HOM05D003379 ORTHO05D003862 1.4e-42 178.3 488 33.6
SGA_v2.0_scaffold306G48013 Striga asiatica HOM05D003379 ORTHO05D003862 2.4e-42 177.6 508 33.1
Atru.chr12.1405 Acer truncatum HOM05D003379 ORTHO05D003862 3.1e-42 177.2 496 33.3
SalBow6G5409 Salvia bowleyana HOM05D003379 ORTHO05D003862 3.1e-42 177.2 349 38.7
COL.COLO4_21771 Corchorus olitorius HOM05D003379 ORTHO05D003862 4.1e-42 176.8 496 32.5
Sp6g30030 Schrenkiella parvula HOM05D003379 ORTHO05D003862 4.1e-42 176.8 487 34.9
Nitab4.5_0001409g0240 Nicotiana tabacum HOM05D000225 ORTHO05D001595 5.3e-42 176.4 495 33.1
Solyc02g091940.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 5.3e-42 176.4 494 33.0
CDE05G0540 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 6.9e-42 176.0 485 34.2
Aqoxy6G00186 Aquilegia oxysepala HOM05D003379 ORTHO05D003862 1.2e-41 175.3 506 34.2
THA.LOC104825281 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 2.0e-41 174.5 487 32.2
Lj1g0011786 Lotus japonicus HOM05D003379 ORTHO05D003862 3.4e-41 173.7 521 33.2
Nitab4.5_0007209g0030 Nicotiana tabacum HOM05D000225 ORTHO05D001595 3.4e-41 173.7 461 33.2
Carub.0006s1216 Capsella rubella HOM05D003379 ORTHO05D003862 1.0e-40 172.2 501 31.7
Cfa009444 Carpinus fangiana HOM05D003379 ORTHO05D003862 1.3e-40 171.8 569 30.2
Ciclev10005064m.g Citrus clementina HOM05D003379 ORTHO05D003862 1.3e-40 171.8 497 32.8
Psat3g093320 Pisum sativum HOM05D003379 ORTHO05D003862 1.3e-40 171.8 492 31.7
Prupe.1G216200 Prunus persica HOM05D003379 ORTHO05D003862 1.7e-40 171.4 490 31.4
A10p24430 Brassica napus HOM05D003379 ORTHO05D003862 2.2e-40 171.0 489 33.1
arahy.Tifrunner.gnm1.ann1.JRYW6U Arachis hypogaea HOM05D003379 ORTHO05D003862 5.0e-40 169.9 498 31.7
Duzib132G1102 Durio zibethinus HOM05D003379 ORTHO05D003862 6.5e-40 169.5 492 33.1
BraA10t44509Z Brassica rapa HOM05D003379 ORTHO05D003862 1.9e-39 167.9 492 32.9
Thhalv10013725m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 5.5e-39 166.4 491 33.4
AT5G13970 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 7.2e-39 166.0 501 31.3
Actinidia22119 Actinidia chinensis HOM05D003379 ORTHO05D003862 9.4e-39 165.6 504 30.8
TWI75G1860 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 1.2e-38 165.2 497 32.6
Aa31LG11G15410 Aethionema arabicum HOM05D003379 ORTHO05D003862 1.6e-38 164.9 491 32.0
AL6G24630 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 1.6e-38 164.9 503 31.4
Manes.08G101800 Manihot esculenta HOM05D003379 ORTHO05D003862 7.9e-38 162.5 502 32.7
Actinidia30590 Actinidia chinensis HOM05D003379 ORTHO05D003862 1.0e-37 162.2 492 30.9
ATR0582G197 Amborella trichopoda HOM05D003379 ORTHO05D003862 1.4e-37 161.8 490 32.4
Ah.09g236390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 3.0e-37 160.6 487 31.2
CANSAT64G2275 Cannabis sativa HOM05D003379 ORTHO05D003862 5.2e-37 159.8 505 30.9
CAN.G1061.1 Capsicum annuum HOM05D003379 ORTHO05D003862 1.1e-36 158.7 496 30.6
Hund23589 Selenicereus undatus HOM05D003379 ORTHO05D003862 7.4e-36 156.0 509 29.7
THA.LOC104825464 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 1.7e-35 154.8 487 32.2
PGSC0003DMG400021424 Solanum tuberosum HOM05D003379 ORTHO05D003862 8.2e-35 152.5 494 30.8
RcHm_v2.0_Chr4g0428951 Rosa chinensis HOM05D003379 ORTHO05D003862 1.1e-34 152.1 491 31.6
CSS0045312 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 2.4e-34 151.0 431 31.8
Sc17g0006750 Simmondsia chinensis HOM05D003379 ORTHO05D003862 3.1e-34 150.6 494 30.8
EL10Ac8g20553 Beta vulgaris HOM05D003379 ORTHO05D003862 7.0e-34 149.4 493 30.0
FAN07G0868 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.6e-33 148.3 497 29.8
HanXRQChr12g0384731 Helianthus annuus HOM05D003379 ORTHO05D003862 2.6e-33 147.5 490 30.8
Rhsim12G0017700 Rhododendron simsii HOM05D003379 ORTHO05D003862 2.6e-33 147.5 509 31.0
FAN17G1075 Fragaria x ananassa HOM05D003379 ORTHO05D003862 4.5e-33 146.7 496 29.2
GSVIVG01001080001 Vitis vinifera HOM05D003379 ORTHO05D003862 4.5e-33 146.7 457 30.4
Lalb_Chr22g0359971 Lupinus albus HOM05D003379 ORTHO05D003862 5.9e-33 146.4 494 30.2
Peaxi162Scf00171g00621 Petunia axillaris HOM05D003379 ORTHO05D003862 2.2e-32 144.4 491 31.2
Gohir.D02G175200 Gossypium hirsutum HOM05D003379 ORTHO05D003862 2.9e-32 144.1 501 29.9
Gorai.005G196800 Gossypium raimondii HOM05D003379 ORTHO05D003862 2.9e-32 144.1 501 30.1
HanXRQChr17g0550921 Helianthus annuus HOM05D003379 ORTHO05D003862 6.5e-32 142.9 265 40.0
FvH4_4g22730 Fragaria vesca HOM05D003379 ORTHO05D003862 1.1e-31 142.1 499 29.5
Manes.09G187602 Manihot esculenta HOM05D003379 ORTHO05D003862 1.1e-31 142.1 491 31.2
FAN12G1414 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.6e-30 138.3 499 28.9
TWI36G1473 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 8.0e-30 136.0 499 31.9
Aa31LG3G14350 Aethionema arabicum HOM05D003379 ORTHO05D003862 3.0e-29 134.0 487 31.0
Thecc.02G193300 Theobroma cacao HOM05D003379 ORTHO05D003862 1.2e-28 132.1 485 30.9
CAN.G7.8 Capsicum annuum HOM05D003379 ORTHO05D003862 9.7e-28 129.0 504 31.7
HPP92_027984 Vanilla planifolia HOM05D003379 ORTHO05D003862 1.7e-27 128.3 417 30.9
BcaC04g19123 Brassica carinata HOM05D003379 ORTHO05D003862 3.7e-27 127.1 483 28.4
AL6G23930 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 4.8e-27 126.7 481 30.4
CARHR200130 Cardamine hirsuta HOM05D003379 ORTHO05D003862 6.3e-27 126.3 493 29.8
Nitab4.5_0002116g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 8.2e-27 125.9 507 31.4
CARHR199420 Cardamine hirsuta HOM05D003379 ORTHO05D003862 2.4e-26 124.4 306 33.0
Thhalv10013755m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 3.1e-26 124.0 480 30.0
Nitab4.5_0005424g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 5.3e-26 123.2 495 30.9
MD13G1129900 Malus domestica HOM05D003379 ORTHO05D003862 1.6e-25 121.7 489 27.8
Sp6g30680 Schrenkiella parvula HOM05D003379 ORTHO05D003862 2.0e-25 121.3 480 29.2
Sopen04g017060 Solanum pennellii HOM05D003379 ORTHO05D003862 5.9e-25 119.8 499 30.1
Solyc04g024520.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 2.9e-24 117.5 498 29.7
ECA246G3772 Erigeron canadensis HOM05D003379 ORTHO05D003862 3.8e-24 117.1 491 29.7
A10p24890 Brassica napus HOM05D003379 ORTHO05D003862 8.5e-24 115.9 440 28.0
PGSC0003DMG400004243 Solanum tuberosum HOM05D003379 ORTHO05D003862 8.5e-24 115.9 500 30.0
Carub.0006s1148 Capsella rubella HOM05D003379 ORTHO05D003862 3.2e-23 114.0 488 28.7
AUR62014693 Chenopodium quinoa HOM05D003379 ORTHO05D003862 3.2e-23 114.0 488 27.5
BraA10t44552Z Brassica rapa HOM05D003379 ORTHO05D003862 7.2e-23 112.8 479 26.7
C09p63750 Brassica napus HOM05D003379 ORTHO05D003862 9.4e-23 112.5 425 28.0
AT5G13310 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 3.0e-21 107.5 483 28.0
Gohir.A03G152100 Gossypium hirsutum HOM05D003379 ORTHO05D003862 1.7e-19 101.7 460 28.0
Zm00001eb084870 Zea mays HOM05D003379 ORTHO05D003862 2.8e-19 100.9 501 27.1
Zm00001eb421370 Zea mays HOM05D003379 ORTHO05D003862 8.3e-19 99.4 493 26.4
ECA234G2936 Erigeron canadensis HOM05D003379 ORTHO05D003862 1.1e-18 99.0 493 27.8
AUR62012502 Chenopodium quinoa HOM05D003379 ORTHO05D003862 2.4e-18 97.8 338 29.3
HPP92_006450 Vanilla planifolia HOM05D003379 ORTHO05D003862 3.1e-18 97.4 327 30.0
BcaNung03374 Brassica carinata HOM05D003379 ORTHO05D003862 4.5e-17 93.6 213 34.3
unitig_22.g5626 Utricularia gibba HOM05D003379 ORTHO05D003862 7.7e-17 92.8 487 26.1
Lsat_1_v5_gn_4_1521 Lactuca sativa HOM05D003379 ORTHO05D003862 3.8e-16 90.5 386 28.5
CSS0018885 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 6.1e-14 83.2 309 29.1
vmacro01023 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 6.1e-14 83.2 507 26.6
Lj6P837T11 Lonicera japonica HOM05D003379 ORTHO05D003862 2.0e-12 78.2 201 32.3
Mapoly0001s0546 Marchantia polymorpha HOM05D003379 ORTHO05D003862 2.6e-12 77.8 230 34.3
RcHm_v2.0_Chr3g0475791 Rosa chinensis HOM05D003379 ORTHO05D003862 3.7e-11 73.9 474 24.3
BcaC04g20129 Brassica carinata HOM05D003379 ORTHO05D003862 1.1e-10 72.4 211 30.3
FAN05G5404 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.1e-10 72.4 209 31.6
FvH4_6g20211 Fragaria vesca HOM05D003379 ORTHO05D003862 4.1e-10 70.5 209 31.6
FAN05G4320 Fragaria x ananassa HOM05D003379 ORTHO05D003862 7.0e-10 69.7 164 34.8
Hma1.2p1_0421F.1_g149960 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 1.2e-09 68.9 96 47.9
Pp3c5_23700 Physcomitrium patens HOM05D003379 ORTHO05D003862 1.6e-09 68.6 386 27.5
BcaC09g48308 Brassica carinata HOM05D003379 ORTHO05D003862 1.1e-07 62.4 73 49.3
BolC7t42848H Brassica oleracea HOM05D003379 ORTHO05D003862 1.2e-06 58.9 221 29.9
BcaC01g02664 Brassica carinata HOM05D003379 ORTHO05D003862 3.6e-06 57.4 63 42.9
C07p23110 Brassica napus HOM05D003379 ORTHO05D003862 4.7e-06 57.0 263 25.9
BolC3t18480H Brassica oleracea HOM05D003379 ORTHO05D003862 6.1e-06 56.6 63 42.9
C03p62180 Brassica napus HOM05D003379 ORTHO05D003862 8.0e-06 56.2 63 42.9


User provided reference genes

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