Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g01230 Coffea canephora HOM05D005729 ORTHO05D007026 2.7e-72 275.8 206 100.0
Actinidia19554 Actinidia chinensis HOM05D005729 ORTHO05D007026 1.6e-32 143.7 202 56.9
Manes.04G092600 Manihot esculenta HOM05D005729 ORTHO05D007026 4.7e-32 142.1 202 49.5
Dinv33283 Davidia involucrata HOM05D005729 ORTHO05D007026 1.8e-31 140.2 202 55.4
SGA_v2.0_scaffold47G17637 Striga asiatica HOM05D005729 ORTHO05D007026 2.3e-31 139.8 202 59.4
Oeu003419.1 Olea europaea HOM05D005729 ORTHO05D007026 8.9e-31 137.9 205 56.6
Lsat_1_v5_gn_2_94961 Lactuca sativa HOM05D005729 ORTHO05D007026 3.4e-30 136.0 205 57.6
EL10Ac6g13393 Beta vulgaris HOM05D005729 ORTHO05D007026 4.4e-30 135.6 202 61.4
EL10As7g23751 Beta vulgaris HOM05D005729 ORTHO05D007026 5.7e-30 135.2 202 61.4
CSS0020873 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 2.2e-29 133.3 216 49.5
Cpa.g.sc9.286 Carica papaya HOM05D005729 ORTHO05D007026 2.8e-29 132.9 202 53.0
CiPaw.03G002600 Carya illinoinensis HOM05D005729 ORTHO05D007026 4.9e-29 132.1 202 55.0
unitig_92.g28207 Utricularia gibba HOM05D005729 ORTHO05D007026 4.9e-29 132.1 202 55.0
CANSAT64G2014 Cannabis sativa HOM05D005729 ORTHO05D007026 2.4e-28 129.8 204 51.5
Phvul.001G085400 Phaseolus vulgaris HOM05D005729 ORTHO05D007026 3.1e-28 129.4 202 51.5
Glyma.19G102200 Glycine max HOM05D005729 ORTHO05D007026 4.1e-28 129.0 202 51.5
PGR142G3540 Punica granatum HOM05D005729 ORTHO05D007026 7.0e-28 128.3 202 48.0
Sp4g13900 Schrenkiella parvula HOM05D005729 ORTHO05D007026 7.0e-28 128.3 205 57.6
AT2G31410 Arabidopsis thaliana HOM05D005729 ORTHO05D007026 9.2e-28 127.9 209 55.5
SalBow7G1413 Salvia bowleyana HOM05D005729 ORTHO05D007026 9.2e-28 127.9 203 53.2
Solyc02g094490.4 Solanum lycopersicum HOM05D005729 ORTHO05D007026 1.2e-27 127.5 202 51.0
Duzib187G1006 Durio zibethinus HOM05D005729 ORTHO05D007026 1.6e-27 127.1 202 51.0
Glyma.16G049200 Glycine max HOM05D005729 ORTHO05D007026 1.6e-27 127.1 202 51.5
Potri.002G237000 Populus trichocarpa HOM05D005729 ORTHO05D007026 1.6e-27 127.1 204 57.8
CAN.G473.157 Capsicum annuum HOM05D005729 ORTHO05D007026 2.0e-27 126.7 202 56.4
Lalb_Chr22g0359961 Lupinus albus HOM05D005729 ORTHO05D007026 2.0e-27 126.7 202 54.0
Ah.02g128910 Amaranthus hybridus HOM05D005729 ORTHO05D007026 2.7e-27 126.3 202 59.4
Lju41C60T1 Lonicera japonica HOM05D005729 ORTHO05D007026 3.5e-27 125.9 206 68.0
Peaxi162Scf00420g00083 Petunia axillaris HOM05D005729 ORTHO05D007026 3.5e-27 125.9 202 58.4
Thhalv10017252m.g Eutrema salsugineum HOM05D005729 ORTHO05D007026 4.5e-27 125.6 208 52.9
PGSC0003DMG400035897 Solanum tuberosum HOM05D005729 ORTHO05D007026 4.5e-27 125.6 202 57.9
HanXRQChr14g0451391 Helianthus annuus HOM05D005729 ORTHO05D007026 1.0e-26 124.4 204 55.4
Prupe.2G125900 Prunus persica HOM05D005729 ORTHO05D007026 1.0e-26 124.4 202 51.5
Sopen02g039170 Solanum pennellii HOM05D005729 ORTHO05D007026 1.7e-26 123.6 202 61.9
MBI07_g07331_MAGBIO Magnolia biondii HOM05D005729 ORTHO05D007026 2.9e-26 122.9 206 56.3
Aa31LG5G5560 Aethionema arabicum HOM05D005729 ORTHO05D007026 3.8e-26 122.5 203 55.7
arahy.Tifrunner.gnm1.ann1.33W0XH Arachis hypogaea HOM05D005729 ORTHO05D007026 5.0e-26 122.1 202 56.4
ClCG01G007820 Citrullus lanatus HOM05D005729 ORTHO05D007026 5.0e-26 122.1 202 47.5
DCAR_014472 Daucus carota HOM05D005729 ORTHO05D007026 5.0e-26 122.1 203 54.7
ECA238G1999 Erigeron canadensis HOM05D005729 ORTHO05D007026 5.0e-26 122.1 202 55.0
Dinv25620 Davidia involucrata HOM05D000884 ORTHO05D002127 6.6e-26 121.7 195 59.0
Potri.014G145600 Populus trichocarpa HOM05D005729 ORTHO05D007026 6.6e-26 121.7 203 48.8
Sed0006238 Sechium edule HOM05D005729 ORTHO05D007026 6.6e-26 121.7 202 50.0
Thecc.04G047000 Theobroma cacao HOM05D005729 ORTHO05D007026 6.6e-26 121.7 202 51.0
Migut.K01484 Erythranthe guttata HOM05D005729 ORTHO05D007026 8.6e-26 121.3 201 54.2
THA.LOC104815860 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 8.6e-26 121.3 203 51.7
TPR.G10334 Trifolium pratense HOM05D005729 ORTHO05D007026 1.1e-25 120.9 202 51.0
BcaB01g04046 Brassica carinata HOM05D005729 ORTHO05D007026 1.9e-25 120.2 208 55.3
AL4G26660 Arabidopsis lyrata HOM05D005729 ORTHO05D007026 2.5e-25 119.8 209 54.5
Nn4g22156 Nelumbo nucifera HOM05D005729 ORTHO05D007026 3.3e-25 119.4 200 49.5
Medtr7g083930 Medicago truncatula HOM05D005729 ORTHO05D007026 5.6e-25 118.6 207 48.3
Lj1g0015500 Lotus japonicus HOM05D005729 ORTHO05D007026 7.3e-25 118.2 202 53.5
Sc07g0003710 Simmondsia chinensis HOM05D005729 ORTHO05D007026 9.5e-25 117.9 202 57.9
Gohir.D07G239700 Gossypium hirsutum HOM05D005729 ORTHO05D007026 1.2e-24 117.5 202 55.9
CARHR125040 Cardamine hirsuta HOM05D005729 ORTHO05D007026 1.6e-24 117.1 206 48.5
CsaV3_5G024890 Cucumis sativus L. HOM05D005729 ORTHO05D007026 1.6e-24 117.1 207 48.8
TAR371G0439 Trochodendron aralioides HOM05D005729 ORTHO05D007026 1.6e-24 117.1 203 49.3
BcaC02g07982 Brassica carinata HOM05D005729 ORTHO05D007026 2.1e-24 116.7 206 51.5
C04p61110 Brassica napus HOM05D005729 ORTHO05D007026 2.1e-24 116.7 206 51.5
BolC4t27596H Brassica oleracea HOM05D005729 ORTHO05D007026 2.1e-24 116.7 206 51.5
MELO3C005111.2 Cucumis melo HOM05D005729 ORTHO05D007026 2.1e-24 116.7 207 48.8
FAN12G1178 Fragaria x ananassa HOM05D005729 ORTHO05D007026 2.1e-24 116.7 203 45.3
QL11p027744 Quercus lobata HOM05D005729 ORTHO05D007026 2.8e-24 116.3 202 55.4
THA.LOC104826200 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 2.8e-24 116.3 201 52.7
TWI34G0826 Tripterygium wilfordii HOM05D005729 ORTHO05D007026 2.8e-24 116.3 204 55.9
A03p17590 Brassica napus HOM05D005729 ORTHO05D007026 3.6e-24 115.9 206 55.8
C03p20700 Brassica napus HOM05D005729 ORTHO05D007026 4.7e-24 115.5 206 55.3
BolC3t14453H Brassica oleracea HOM05D005729 ORTHO05D007026 4.7e-24 115.5 206 55.3
BraA03t11026Z Brassica rapa HOM05D005729 ORTHO05D007026 4.7e-24 115.5 206 55.3
Carub.0004s1273 Capsella rubella HOM05D005729 ORTHO05D007026 4.7e-24 115.5 205 53.2
FAN17G0918 Fragaria x ananassa HOM05D005729 ORTHO05D007026 4.7e-24 115.5 203 45.3
Gorai.001G275800 Gossypium raimondii HOM05D005729 ORTHO05D007026 4.7e-24 115.5 202 57.4
Ca_08134_v3 Cicer arietinum L. HOM05D005729 ORTHO05D007026 6.1e-24 115.2 202 55.0
FvH4_4g34010 Fragaria vesca HOM05D005729 ORTHO05D007026 6.1e-24 115.2 203 45.3
FAN22G1114 Fragaria x ananassa HOM05D005729 ORTHO05D007026 6.1e-24 115.2 203 45.3
Sed0018343 Sechium edule HOM05D005729 ORTHO05D007026 6.1e-24 115.2 198 49.5
Aqoxy5G03167 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 8.0e-24 114.8 202 52.5
FAN21G1155 Fragaria x ananassa HOM05D005729 ORTHO05D007026 8.0e-24 114.8 203 47.8
Ciclev10016760m.g Citrus clementina HOM05D005729 ORTHO05D007026 1.0e-23 114.4 205 52.2
TAR629G2671 Trochodendron aralioides HOM05D005729 ORTHO05D007026 1.4e-23 114.0 203 56.2
MD00G1041400 Malus domestica HOM05D005729 ORTHO05D007026 2.3e-23 113.2 202 48.5
A04p24280 Brassica napus HOM05D005729 ORTHO05D007026 4.0e-23 112.5 206 50.5
BraA04t17947Z Brassica rapa HOM05D005729 ORTHO05D007026 4.0e-23 112.5 206 50.5
Eucgr.G01937 Eucalyptus grandis HOM05D005729 ORTHO05D007026 4.0e-23 112.5 208 45.7
MD05G1139400 Malus domestica HOM05D005729 ORTHO05D007026 4.0e-23 112.5 202 50.0
ATR0559G324 Amborella trichopoda HOM05D005729 ORTHO05D007026 5.2e-23 112.1 202 52.0
AUR62036639 Chenopodium quinoa HOM05D005729 ORTHO05D007026 5.2e-23 112.1 204 55.9
Psat3g093680 Pisum sativum HOM05D005729 ORTHO05D007026 5.2e-23 112.1 207 48.3
Haze_19869 Corylus avellana HOM05D005729 ORTHO05D007026 1.2e-22 110.9 203 56.2
Aqoxy5G03273 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 1.5e-22 110.5 202 48.5
Haze_14943 Corylus avellana HOM05D005729 ORTHO05D007026 2.0e-22 110.2 200 56.5
TAR628G1373 Trochodendron aralioides HOM05D005729 ORTHO05D007026 2.0e-22 110.2 214 54.2
Cfa007167 Carpinus fangiana HOM05D005729 ORTHO05D007026 2.6e-22 109.8 200 56.0
Cfa016824 Carpinus fangiana HOM05D005729 ORTHO05D007026 2.6e-22 109.8 202 56.4
FAN25G1272 Fragaria x ananassa HOM05D005729 ORTHO05D007026 2.6e-22 109.8 199 48.2
Nitab4.5_0002172g0090 Nicotiana tabacum HOM05D005729 ORTHO05D007026 2.6e-22 109.8 205 55.1
RcHm_v2.0_Chr5g0049531 Rosa chinensis HOM05D005729 ORTHO05D007026 4.4e-22 109.0 203 46.8
Zm00001eb183750 Zea mays HOM05D005729 ORTHO05D007026 1.8e-20 103.6 203 41.9
Atru.chr6.2652 Acer truncatum HOM05D005729 ORTHO05D007026 3.2e-20 102.8 203 55.7
Gohir.A07G232500 Gossypium hirsutum HOM05D005729 ORTHO05D007026 3.2e-20 102.8 202 53.5
Rhsim08G0039300 Rhododendron simsii HOM05D005729 ORTHO05D007026 9.2e-20 101.3 140 57.1
CSS0008758 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 1.2e-19 100.9 138 57.2
Duzib264G0852 Durio zibethinus HOM05D005729 ORTHO05D007026 1.2e-19 100.9 202 45.5
HPP92_011631 Vanilla planifolia HOM05D005729 ORTHO05D007026 1.3e-18 97.4 203 52.7
Os02g0595400 Oryza sativa ssp. japonica HOM05D005729 ORTHO05D007026 2.3e-18 96.7 203 53.2
CSS0019060 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 6.6e-18 95.1 138 55.8
Nitab4.5_0000519g0260 Nicotiana tabacum HOM05D005729 ORTHO05D007026 6.6e-18 95.1 148 66.2
Zm00001eb246070 Zea mays HOM05D005729 ORTHO05D007026 3.3e-17 92.8 203 43.8
Sabra02G0180500 Salix brachista HOM05D005729 ORTHO05D007026 4.7e-16 89.0 209 38.8
PSO017G0758 Papaver somniferum HOM05D005729 ORTHO05D007026 2.3e-15 86.7 201 55.2
PSO478G2072 Papaver somniferum HOM05D005729 ORTHO05D007026 4.0e-15 85.9 201 45.8
Pp3c11_25830 Physcomitrium patens HOM05D005729 ORTHO05D007026 1.7e-13 80.5 202 37.1
AUR62034632 Chenopodium quinoa HOM05D000604 ORTHO05D004512 3.7e-13 79.3 133 45.1
RcHm_v2.0_Chr2g0117931 Rosa chinensis HOM05D005729 ORTHO05D007026 1.4e-12 77.4 136 40.4
RcHm_v2.0_Chr6g0252241 Rosa chinensis HOM05D005729 ORTHO05D007026 3.2e-12 76.3 182 37.4
RcHm_v2.0_Chr1g0315821 Rosa chinensis HOM05D005729 ORTHO05D007026 1.6e-11 73.9 136 39.7
RcHm_v2.0_Chr5g0026441 Rosa chinensis HOM05D005729 ORTHO05D007026 6.0e-11 72.0 136 39.7
RcHm_v2.0_Chr7g0240621 Rosa chinensis HOM05D005729 ORTHO05D007026 3.9e-10 69.3 182 35.7
Haze_19868 Corylus avellana HOM05D005729 ORTHO05D007026 5.0e-10 68.9 108 45.4
RcHm_v2.0_Chr5g0057561 Rosa chinensis HOM05D005729 ORTHO05D007026 5.0e-10 68.9 173 41.6
Mapoly0127s0012 Marchantia polymorpha HOM05D005729 ORTHO05D007026 3.3e-09 66.2 198 49.0
RcHm_v2.0_Chr2g0115461 Rosa chinensis HOM05D005729 ORTHO05D007026 3.3e-09 66.2 182 34.6
COL.COLO4_13365 Corchorus olitorius HOM05D005729 ORTHO05D007026 9.5e-09 64.7 123 40.7
CDE06G2057 Ceratophyllum demersum HOM05D005729 ORTHO05D007026 2.1e-08 63.5 133 39.1
Solyc03g083260.1 Solanum lycopersicum HOM05D005729 ORTHO05D007026 1.4e-07 60.8 99 45.5
Hma1.2p1_0033F.1_g021130 Hydrangea macrophylla HOM05D005729 ORTHO05D007026 2.3e-07 60.1 106 64.2
Atru.chr5.655 Acer truncatum HOM05D000598 ORTHO05D000480 2.0e-06 57.0 107 59.8
EL10Ac1g01380 Beta vulgaris HOM05D005729 ORTHO05D007026 2.0e-06 57.0 81 43.2
RcHm_v2.0_Chr6g0272931 Rosa chinensis HOM05D005729 ORTHO05D007026 7.5e-06 55.1 137 38.7


User provided reference genes

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