Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g01060 Coffea canephora HOM05D005105 ORTHO05D006244 0.0e+00 1159.4 568 100.0
Oeu020395.1 Olea europaea HOM05D005105 ORTHO05D006244 2.7e-223 778.9 574 69.2
Migut.F00035 Erythranthe guttata HOM05D005105 ORTHO05D006244 2.9e-217 758.8 563 65.9
Nitab4.5_0011381g0040 Nicotiana tabacum HOM05D005105 ORTHO05D006244 5.0e-217 758.1 562 68.0
Solyc02g082210.4 Solanum lycopersicum HOM05D005105 ORTHO05D006244 8.0e-215 750.7 562 66.7
QL02p070577 Quercus lobata HOM05D005105 ORTHO05D006244 2.0e-213 746.1 572 65.9
SalBow4G0131 Salvia bowleyana HOM05D005105 ORTHO05D006244 1.2e-210 736.9 579 65.6
Lj7A613T64 Lonicera japonica HOM05D005105 ORTHO05D006244 3.5e-210 735.3 609 62.9
Potri.001G325500 Populus trichocarpa HOM05D005105 ORTHO05D006244 2.2e-209 732.6 568 66.4
TAR629G0447 Trochodendron aralioides HOM05D005105 ORTHO05D006244 5.0e-209 731.5 571 63.9
Thecc.04G041900 Theobroma cacao HOM05D005105 ORTHO05D006244 1.2e-207 726.9 574 63.1
FAN09G0463 Fragaria x ananassa HOM05D005105 ORTHO05D006244 4.7e-207 724.9 561 64.5
Manes.04G087600 Manihot esculenta HOM05D005105 ORTHO05D006244 3.0e-206 722.2 581 62.8
FAN02G1943 Fragaria x ananassa HOM05D005105 ORTHO05D006244 4.0e-206 721.8 561 64.2
Nn3g16360 Nelumbo nucifera HOM05D005105 ORTHO05D006244 4.0e-206 721.8 570 64.6
TWI34G1796 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 5.2e-206 721.5 573 63.7
Prupe.3G310100 Prunus persica HOM05D005105 ORTHO05D006244 2.0e-205 719.5 565 63.5
FAN14G3030 Fragaria x ananassa HOM05D005105 ORTHO05D006244 2.6e-205 719.2 566 64.3
RcHm_v2.0_Chr2g0176111 Rosa chinensis HOM05D005105 ORTHO05D006244 2.6e-205 719.2 584 61.6
MD09G1007000 Malus domestica HOM05D005105 ORTHO05D006244 5.7e-205 718.0 574 62.7
Duzib147G0369 Durio zibethinus HOM05D005105 ORTHO05D006244 9.7e-205 717.2 571 63.0
FAN05G2765 Fragaria x ananassa HOM05D005105 ORTHO05D006244 1.3e-204 716.8 580 62.6
GSVIVG01033038001 Vitis vinifera HOM05D005105 ORTHO05D006244 4.8e-204 714.9 492 70.1
Ciclev10014761m.g Citrus clementina HOM05D005105 ORTHO05D006244 7.0e-203 711.1 584 62.5
TWI60G0613 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 2.0e-202 709.5 560 63.9
CANSAT21G1015 Cannabis sativa HOM05D005105 ORTHO05D006244 4.5e-202 708.4 564 63.1
Cfa007197 Carpinus fangiana HOM05D005105 ORTHO05D006244 4.5e-202 708.4 568 62.3
CiPaw.03G004800 Carya illinoinensis HOM05D005105 ORTHO05D006244 7.7e-202 707.6 481 71.1
PGR142G1816 Punica granatum HOM05D005105 ORTHO05D006244 1.3e-201 706.8 565 62.5
Rhsim08G0041000 Rhododendron simsii HOM05D005105 ORTHO05D006244 1.3e-201 706.8 561 64.3
arahy.Tifrunner.gnm1.ann1.JMV5LB Arachis hypogaea HOM05D005105 ORTHO05D006244 2.2e-201 706.1 581 61.3
MELO3C025087.2 Cucumis melo HOM05D005105 ORTHO05D006244 3.8e-201 705.3 571 61.8
Gorai.001G274700 Gossypium raimondii HOM05D005105 ORTHO05D006244 1.5e-200 703.4 570 60.9
Haze_14911 Corylus avellana HOM05D005105 ORTHO05D006244 5.5e-200 701.4 551 63.5
Nitab4.5_0011717g0030 Nicotiana tabacum HOM05D005105 ORTHO05D006244 7.2e-200 701.0 561 63.6
Gohir.D07G238700 Gossypium hirsutum HOM05D005105 ORTHO05D006244 2.1e-199 699.5 570 60.9
Sed0022814 Sechium edule HOM05D005105 ORTHO05D006244 2.1e-199 699.5 566 62.0
ClCG01G008700 Citrullus lanatus HOM05D005105 ORTHO05D006244 2.7e-199 699.1 566 61.7
Gohir.A07G231500 Gossypium hirsutum HOM05D005105 ORTHO05D006244 3.6e-199 698.7 570 60.9
Gorai.006G044700 Gossypium raimondii HOM05D005105 ORTHO05D006244 3.0e-198 695.7 599 59.6
CsaV3_5G024330 Cucumis sativus L. HOM05D005105 ORTHO05D006244 5.2e-198 694.9 564 62.2
Lalb_Chr00c40g0412501 Lupinus albus HOM05D005105 ORTHO05D006244 5.2e-198 694.9 559 63.1
Glyma.16G052500 Glycine max HOM05D005105 ORTHO05D006244 8.8e-198 694.1 561 62.4
PSO017G6125 Papaver somniferum HOM05D005105 ORTHO05D006244 9.8e-197 690.6 555 62.9
Sc09g0007730 Simmondsia chinensis HOM05D005105 ORTHO05D006244 1.3e-196 690.3 490 68.0
Lj1g0026609 Lotus japonicus HOM05D005105 ORTHO05D006244 1.7e-196 689.9 562 61.2
PSO478G4366 Papaver somniferum HOM05D005105 ORTHO05D006244 1.1e-195 687.2 555 63.1
Aqoxy5G03244_Aqoxy5G03245 Aquilegia oxysepala HOM05D005105 ORTHO05D006244 1.8e-195 686.4 575 60.5
Medtr7g026520 Medicago truncatula HOM05D005105 ORTHO05D006244 3.1e-195 685.6 571 60.6
DCAR_015209 Daucus carota HOM05D005105 ORTHO05D006244 4.1e-195 685.3 586 60.6
GSVIVG01008594001 Vitis vinifera HOM05D005105 ORTHO05D006244 4.1e-195 685.3 583 60.5
HanXRQChr17g0551611 Helianthus annuus HOM05D005105 ORTHO05D006244 7.0e-195 684.5 562 62.3
Lsat_1_v5_gn_0_23961 Lactuca sativa HOM05D005105 ORTHO05D006244 2.7e-194 682.6 559 61.9
Thhalv10003939m.g Eutrema salsugineum HOM05D005105 ORTHO05D006244 5.9e-194 681.4 569 59.9
Sp2g16080 Schrenkiella parvula HOM05D005105 ORTHO05D006244 1.0e-193 680.6 570 60.0
Lj2g0026571 Lotus japonicus HOM05D005105 ORTHO05D006244 1.3e-193 680.2 561 62.2
arahy.Tifrunner.gnm1.ann1.B1CDD0 Arachis hypogaea HOM05D005105 ORTHO05D006244 2.3e-193 679.5 575 59.7
AUR62003394 Chenopodium quinoa HOM05D005105 ORTHO05D006244 1.1e-192 677.2 492 66.9
vmacro18364 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 7.2e-192 674.5 629 57.6
Ca_07318_v3 Cicer arietinum L. HOM05D005105 ORTHO05D006244 9.5e-192 674.1 572 59.8
C07p36060 Brassica napus HOM05D005105 ORTHO05D006244 3.6e-191 672.2 569 59.6
VMungo1383G1917 Vigna mungo HOM05D005105 ORTHO05D006244 4.7e-191 671.8 567 60.7
AT3G26950 Arabidopsis thaliana HOM05D005105 ORTHO05D006244 8.0e-191 671.0 564 59.4
THA.LOC104825638 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 8.0e-191 671.0 561 59.9
BraA06t27085Z Brassica rapa HOM05D005105 ORTHO05D006244 1.8e-190 669.8 577 58.4
EL10Ac6g15451 Beta vulgaris HOM05D005105 ORTHO05D006244 3.0e-190 669.1 571 58.5
ECA246G4542 Erigeron canadensis HOM05D005105 ORTHO05D006244 5.2e-190 668.3 561 60.2
Carub.0005s0514 Capsella rubella HOM05D005105 ORTHO05D006244 1.5e-189 666.8 566 58.7
BcaC06g31032 Brassica carinata HOM05D005105 ORTHO05D006244 2.6e-189 666.0 568 59.3
AL5G15980 Arabidopsis lyrata HOM05D005105 ORTHO05D006244 5.7e-189 664.8 568 58.8
Actinidia36228 Actinidia chinensis HOM05D005105 ORTHO05D006244 9.8e-189 664.1 504 66.9
Psat3g181600 Pisum sativum HOM05D005105 ORTHO05D006244 1.7e-188 663.3 577 59.4
Phvul.001G090000 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 2.2e-188 662.9 563 60.9
VMungo0464G0185 Vigna mungo HOM05D005105 ORTHO05D006244 1.8e-187 659.8 562 60.0
Glyma.16G146100 Glycine max HOM05D005105 ORTHO05D006244 4.1e-187 658.7 572 60.0
vmacro19146 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 5.9e-186 654.8 619 55.7
AUR62029433 Chenopodium quinoa HOM05D005105 ORTHO05D006244 2.1e-183 646.4 491 64.0
Atru.chr6.2614 Acer truncatum HOM05D005105 ORTHO05D006244 2.8e-183 646.0 542 60.5
ATR0582G106 Amborella trichopoda HOM05D005105 ORTHO05D006244 1.0e-182 644.0 494 64.0
Sabra16G0208000 Salix brachista HOM05D005105 ORTHO05D006244 1.0e-182 644.0 556 60.6
HanXRQChr05g0155591 Helianthus annuus HOM05D005105 ORTHO05D006244 1.5e-181 640.2 543 59.5
BcaC06g33873 Brassica carinata HOM05D005105 ORTHO05D006244 3.4e-181 639.0 568 56.7
BolC7t44120H Brassica oleracea HOM05D005105 ORTHO05D006244 5.8e-181 638.3 568 56.7
THA.LOC104805319 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 1.3e-180 637.1 576 57.3
A06p41600 Brassica napus HOM05D005105 ORTHO05D006244 6.4e-180 634.8 570 56.7
DCAR_007509 Daucus carota HOM05D005105 ORTHO05D006244 1.1e-176 624.0 573 56.5
Aa31LG2G5630 Aethionema arabicum HOM05D005105 ORTHO05D006244 4.4e-173 612.1 596 52.7
Phvul.004G070700 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 1.3e-172 610.5 566 55.7
CDE06G1277 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 1.9e-168 596.7 495 57.8
Os11g0507400 Oryza sativa ssp. japonica HOM05D005105 ORTHO05D006244 2.6e-165 586.3 492 59.6
Peaxi162Scf00331g00014 Petunia axillaris HOM05D005105 ORTHO05D006244 1.2e-162 577.4 575 55.1
Dinv33309 Davidia involucrata HOM05D005105 ORTHO05D006244 7.3e-160 568.2 407 68.8
Duzib264G1310 Durio zibethinus HOM05D005105 ORTHO05D006244 6.2e-159 565.1 578 52.2
Hma1.2p1_0093F.1_g046930 Hydrangea macrophylla HOM05D005105 ORTHO05D006244 5.2e-158 562.0 381 69.3
Cpa.g.sc70.110 Carica papaya HOM05D005105 ORTHO05D006244 7.6e-157 558.1 455 63.7
Gohir.A09G038300 Gossypium hirsutum HOM05D005105 ORTHO05D006244 7.8e-154 548.1 459 61.9
SHI04027 Sapria himalayana HOM05D005105 ORTHO05D006244 1.0e-153 547.7 544 53.9
FvH4_6g53950 Fragaria vesca HOM05D005105 ORTHO05D006244 1.7e-153 547.0 370 69.5
CARHR148130 Cardamine hirsuta HOM05D005105 ORTHO05D006244 4.0e-150 535.8 387 64.1
Atru.chr6.2613 Acer truncatum HOM05D005105 ORTHO05D006244 1.2e-149 534.3 349 72.2
unitig_0.g1913 Utricularia gibba HOM05D005105 ORTHO05D006244 2.6e-149 533.1 450 58.9
Eucgr.I01623 Eucalyptus grandis HOM05D005105 ORTHO05D006244 1.9e-144 516.9 347 69.7
Lsat_1_v5_gn_5_10960 Lactuca sativa HOM05D005105 ORTHO05D006244 9.3e-139 498.0 563 48.5
MD17G1010700 Malus domestica HOM05D005105 ORTHO05D006244 1.7e-132 477.2 348 65.8
CSS0048130 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 3.0e-129 466.5 349 66.2
Prupe.3G297400 Prunus persica HOM05D005105 ORTHO05D006244 5.3e-126 455.7 561 47.4
Lj5A92G44 Lonicera japonica HOM05D005105 ORTHO05D006244 3.4e-125 453.0 326 66.3
CSS0029044 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 7.6e-125 451.8 325 67.4
SMO180G0002 Selaginella moellendorffii HOM05D005105 ORTHO05D006244 1.7e-124 450.7 461 48.6
COL.COLO4_13307 Corchorus olitorius HOM05D005105 ORTHO05D006244 9.3e-123 444.9 493 49.3
PGSC0003DMG400013660 Solanum tuberosum HOM05D005105 ORTHO05D006244 2.1e-122 443.7 302 70.9
ECA246G1012 Erigeron canadensis HOM05D005105 ORTHO05D006244 6.3e-119 432.2 464 50.6
Sopen02g026870 Solanum pennellii HOM05D005105 ORTHO05D006244 6.3e-119 432.2 302 69.2
Pp3c1_35010 Physcomitrium patens HOM05D005105 ORTHO05D006244 4.1e-118 429.5 497 44.1
Pp3c21_14570 Physcomitrium patens HOM05D005105 ORTHO05D006244 3.3e-112 409.8 494 44.9
HPP92_009891 Vanilla planifolia HOM05D005105 ORTHO05D006244 2.2e-108 397.1 314 60.2
Glyma.02G065000 Glycine max HOM05D005105 ORTHO05D006244 2.9e-108 396.7 387 55.3
PSO063G6475 Papaver somniferum HOM05D005105 ORTHO05D006244 3.0e-97 360.1 324 59.6
Dinv23187 Davidia involucrata HOM05D005105 ORTHO05D006244 9.1e-94 348.6 247 68.8
THA.LOC104813335 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 1.7e-92 344.4 269 62.1
Actinidia18328 Actinidia chinensis HOM05D005105 ORTHO05D006244 3.6e-90 336.7 256 64.1
TWI34G0688 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 1.1e-83 315.1 217 69.1
AagrBONN_evm.TU.Sc2ySwM_340.35 Anthoceros agrestis HOM05D005105 ORTHO05D006244 5.7e-80 302.8 498 35.5
HPP92_009881 Vanilla planifolia HOM05D005105 ORTHO05D006244 1.3e-71 275.0 223 58.7
Actinidia18329 Actinidia chinensis HOM05D005105 ORTHO05D006244 4.4e-64 250.0 258 51.2
CDE05G2066 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 7.8e-61 239.2 143 75.5
Gohir.D09G039750 Gossypium hirsutum HOM05D005105 ORTHO05D006244 1.5e-59 235.0 161 67.1
FAN05G0264 Fragaria x ananassa HOM05D005105 ORTHO05D006244 1.9e-59 234.6 239 51.0
HPP92_009897 Vanilla planifolia HOM05D005105 ORTHO05D006244 2.3e-52 211.1 172 58.1
Actinidia25549 Actinidia chinensis HOM05D005105 ORTHO05D006244 2.5e-51 207.6 132 71.2
SGA_v2.0_scaffold253G45172 Striga asiatica HOM05D005105 ORTHO05D006244 5.8e-40 169.9 172 56.4
Actinidia05877 Actinidia chinensis HOM05D000139 ORTHO05D000103 1.3e-39 168.7 203 48.8
CBR_g57654 Chara braunii HOM05D000004 ORTHO05D000002 1.1e-35 155.6 172 42.4
Dinv23186 Davidia involucrata HOM05D005105 ORTHO05D006244 2.6e-32 144.4 156 55.1
Atru.chr6.2612 Acer truncatum HOM05D005105 ORTHO05D006244 2.2e-31 141.4 164 50.6
Lj5A92G45 Lonicera japonica HOM05D005105 ORTHO05D006244 4.9e-31 140.2 139 51.1
Gohir.D09G039801 Gossypium hirsutum HOM05D005105 ORTHO05D006244 3.2e-30 137.5 171 49.1
Actinidia25550 Actinidia chinensis HOM05D005105 ORTHO05D006244 1.0e-28 132.5 150 40.7
Ah.03g148260 Amaranthus hybridus HOM05D005105 ORTHO05D006244 3.0e-28 131.0 92 71.7
Dinv33310 Davidia involucrata HOM05D005105 ORTHO05D006244 1.1e-27 129.0 135 57.8
Glyma.19G097001 Glycine max HOM05D005105 ORTHO05D006244 1.3e-26 125.6 92 68.5
Glyma.19G097101 Glycine max HOM05D005105 ORTHO05D006244 3.4e-24 117.5 86 67.4
HPP92_009880 Vanilla planifolia HOM05D005105 ORTHO05D006244 3.3e-11 74.3 71 50.7
CSS0040735 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 1.7e-07 62.0 105 47.6
SEGI_15377 Sequoiadendron giganteum HOM05D005105 ORTHO05D006244 8.4e-07 59.7 68 42.6


User provided reference genes

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