Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g00890 Coffea canephora HOM05D006878 ORTHO05D008579 6.4e-140 500.7 254 100.0
Actinidia05902 Actinidia chinensis HOM05D006878 ORTHO05D008579 2.7e-98 362.5 244 73.0
Nitab4.5_0009844g0010 Nicotiana tabacum HOM05D006878 ORTHO05D008579 5.1e-97 358.2 249 70.3
Dinv33333 Davidia involucrata HOM05D006878 ORTHO05D008579 6.7e-97 357.8 249 72.3
Nitab4.5_0002050g0060 Nicotiana tabacum HOM05D006878 ORTHO05D008579 8.8e-97 357.5 249 70.3
GSVIVG01033083001 Vitis vinifera HOM05D006878 ORTHO05D008579 2.0e-96 356.3 248 72.2
Peaxi162Scf00420g00554 Petunia axillaris HOM05D006878 ORTHO05D008579 7.4e-96 354.4 250 69.6
Rhsim08G0042400 Rhododendron simsii HOM05D006878 ORTHO05D008579 2.8e-95 352.4 250 69.2
CSS0033487 Camellia sinensis var. sinensis HOM05D006878 ORTHO05D008579 8.2e-95 350.9 251 69.7
MSTRG.3257 Avicennia marina HOM05D006878 ORTHO05D008579 3.1e-94 349.0 245 72.2
TAR371G0275 Trochodendron aralioides HOM05D006878 ORTHO05D008579 5.3e-94 348.2 245 70.2
Ciclev10016370m.g Citrus clementina HOM05D006878 ORTHO05D008579 9.1e-94 347.4 254 67.7
CSS0001354 Camellia sinensis var. sinensis HOM05D006878 ORTHO05D008579 2.0e-93 346.3 240 72.1
Eucgr.I01641 Eucalyptus grandis HOM05D006878 ORTHO05D008579 2.0e-93 346.3 230 71.3
CANSAT64G0355 Cannabis sativa HOM05D006878 ORTHO05D008579 3.4e-93 345.5 251 70.5
COL.COLO4_13265 Corchorus olitorius HOM05D006878 ORTHO05D008579 3.4e-93 345.5 243 71.2
MELO3C008189.2 Cucumis melo HOM05D006878 ORTHO05D008579 4.5e-93 345.1 248 71.0
SalBow7G1076 Salvia bowleyana HOM05D006878 ORTHO05D008579 4.5e-93 345.1 253 68.4
Potri.001G329300 Populus trichocarpa HOM05D006878 ORTHO05D008579 1.7e-92 343.2 249 68.7
Prupe.3G307100 Prunus persica HOM05D006878 ORTHO05D008579 1.7e-92 343.2 238 71.8
TAR629G1038 Trochodendron aralioides HOM05D006878 ORTHO05D008579 1.7e-92 343.2 247 70.4
CsaV3_2G034120 Cucumis sativus L. HOM05D006878 ORTHO05D008579 2.2e-92 342.8 248 70.2
TAR629G1805 Trochodendron aralioides HOM05D006878 ORTHO05D008579 2.2e-92 342.8 248 70.2
Thecc.04G038000 Theobroma cacao HOM05D006878 ORTHO05D008579 3.8e-92 342.0 250 69.2
Duzib147G1327 Durio zibethinus HOM05D006878 ORTHO05D008579 5.0e-92 341.7 252 68.7
ClCG11G007130 Citrullus lanatus HOM05D006878 ORTHO05D008579 6.5e-92 341.3 249 69.1
PGSC0003DMG400020210 Solanum tuberosum HOM05D006878 ORTHO05D008579 8.5e-92 340.9 250 68.0
MD09G1010100 Malus domestica HOM05D006878 ORTHO05D008579 1.1e-91 340.5 247 69.6
Solyc02g094170.3 Solanum lycopersicum HOM05D006878 ORTHO05D008579 1.1e-91 340.5 248 67.7
Migut.K01467 Erythranthe guttata HOM05D006878 ORTHO05D008579 1.4e-91 340.1 251 68.5
PGR142G3785 Punica granatum HOM05D006878 ORTHO05D008579 1.4e-91 340.1 247 66.8
CAN.G473.102 Capsicum annuum HOM05D006878 ORTHO05D008579 2.5e-91 339.3 245 69.0
Oeu005107.2 Olea europaea HOM05D006878 ORTHO05D008579 2.5e-91 339.3 283 63.3
Sopen02g038800 Solanum pennellii HOM05D006878 ORTHO05D008579 4.2e-91 338.6 248 67.3
TWI34G0743 Tripterygium wilfordii HOM05D006878 ORTHO05D008579 5.5e-91 338.2 251 68.1
vmacro18351 Vaccinium macrocarpon HOM05D006878 ORTHO05D008579 5.5e-91 338.2 260 66.2
MD17G1000600 Malus domestica HOM05D006878 ORTHO05D008579 9.4e-91 337.4 241 69.3
Sed0002550 Sechium edule HOM05D006878 ORTHO05D008579 9.4e-91 337.4 248 68.5
Cfa007222 Carpinus fangiana HOM05D006878 ORTHO05D008579 1.2e-90 337.0 249 68.3
TWI34G1534 Tripterygium wilfordii HOM05D006878 ORTHO05D008579 2.7e-90 335.9 255 67.1
DCAR_015107 Daucus carota HOM05D006878 ORTHO05D008579 3.6e-90 335.5 252 68.7
SGA_v2.0_scaffold47G17597 Striga asiatica HOM05D006878 ORTHO05D008579 3.6e-90 335.5 248 69.8
Manes.15G161800 Manihot esculenta HOM05D006878 ORTHO05D008579 7.9e-90 334.3 252 64.3
Sabra16G0210700 Salix brachista HOM05D006878 ORTHO05D008579 7.9e-90 334.3 250 67.6
Aqoxy5G03335 Aquilegia oxysepala HOM05D006878 ORTHO05D008579 3.3e-88 328.9 240 71.2
Gohir.A07G228800 Gossypium hirsutum HOM05D006878 ORTHO05D008579 4.4e-88 328.6 243 68.3
Phvul.001G093000 Phaseolus vulgaris HOM05D006878 ORTHO05D008579 1.3e-87 327.0 256 66.8
Gohir.D07G235800 Gossypium hirsutum HOM05D006878 ORTHO05D008579 1.7e-87 326.6 243 67.1
Gorai.001G271700 Gossypium raimondii HOM05D006878 ORTHO05D008579 1.7e-87 326.6 243 67.1
Nn3g16452 Nelumbo nucifera HOM05D006878 ORTHO05D008579 8.2e-87 324.3 238 68.9
Glyma.16G056000 Glycine max HOM05D006878 ORTHO05D008579 1.1e-86 323.9 251 67.3
HanXRQChr14g0450611 Helianthus annuus HOM05D006878 ORTHO05D008579 3.1e-86 322.4 247 66.8
Atru.chr6.2581 Acer truncatum HOM05D006878 ORTHO05D008579 9.1e-86 320.9 245 66.9
VMungo1383G2452 Vigna mungo HOM05D006878 ORTHO05D008579 2.0e-85 319.7 251 65.3
QL02p071231 Quercus lobata HOM05D006878 ORTHO05D008579 4.5e-85 318.5 280 60.0
RcHm_v2.0_Chr2g0175731 Rosa chinensis HOM05D006878 ORTHO05D008579 5.9e-85 318.2 285 60.7
FvH4_6g53600 Fragaria vesca HOM05D006878 ORTHO05D008579 1.1e-83 313.9 284 60.2
Sc03g0006490 Simmondsia chinensis HOM05D006878 ORTHO05D008579 1.1e-83 313.9 238 65.1
Aa31LG11G14940 Aethionema arabicum HOM05D006878 ORTHO05D008579 3.2e-83 312.4 257 61.9
FAN14G5463 Fragaria x ananassa HOM05D006878 ORTHO05D008579 4.2e-83 312.0 284 60.2
Psat3g178400 Pisum sativum HOM05D006878 ORTHO05D008579 5.5e-83 311.6 249 64.7
FAN09G4559 Fragaria x ananassa HOM05D006878 ORTHO05D008579 1.2e-82 310.5 285 59.3
TPR.G38297 Trifolium pratense HOM05D006878 ORTHO05D008579 3.6e-82 308.9 250 64.4
AUR62029405 Chenopodium quinoa HOM05D006878 ORTHO05D008579 8.0e-82 307.8 253 61.3
Lalb_Chr14g0363461 Lupinus albus HOM05D006878 ORTHO05D008579 1.4e-81 307.0 241 66.0
Lsat_1_v5_gn_2_93161 Lactuca sativa HOM05D006878 ORTHO05D008579 1.8e-81 306.6 232 66.8
MBI07_g39449_MAGBIO Magnolia biondii HOM05D006878 ORTHO05D008579 1.8e-81 306.6 240 64.2
arahy.Tifrunner.gnm1.ann1.1N9EHH Arachis hypogaea HOM05D006878 ORTHO05D008579 4.0e-81 305.4 245 64.1
Carub.0006s1234 Capsella rubella HOM05D006878 ORTHO05D008579 5.2e-81 305.1 256 62.5
AL6G24810 Arabidopsis lyrata HOM05D006878 ORTHO05D008579 6.7e-81 304.7 258 61.2
BcaB01g05305 Brassica carinata HOM05D006878 ORTHO05D008579 8.8e-81 304.3 246 62.6
BcaB01g06341 Brassica carinata HOM05D006878 ORTHO05D008579 8.8e-81 304.3 256 61.3
Sp6g29870 Schrenkiella parvula HOM05D006878 ORTHO05D008579 8.8e-81 304.3 258 60.9
SpUn0049_0070 Schrenkiella parvula HOM05D006878 ORTHO05D008579 8.8e-81 304.3 258 60.9
arahy.Tifrunner.gnm1.ann1.G39TQA Arachis hypogaea HOM05D006878 ORTHO05D008579 1.1e-80 303.9 245 64.1
AUR62003439 Chenopodium quinoa HOM05D006878 ORTHO05D008579 1.5e-80 303.5 255 61.6
Thhalv10014409m.g Eutrema salsugineum HOM05D006878 ORTHO05D008579 2.0e-80 303.1 258 60.5
C03p07460 Brassica napus HOM05D006878 ORTHO05D008579 2.6e-80 302.8 259 61.4
BolC3t13247H Brassica oleracea HOM05D006878 ORTHO05D008579 2.6e-80 302.8 259 61.4
ATR0561G206 Amborella trichopoda HOM05D006878 ORTHO05D008579 7.5e-80 301.2 266 58.3
AT5G14140 Arabidopsis thaliana HOM05D006878 ORTHO05D008579 7.5e-80 301.2 258 60.1
A03p06460 Brassica napus HOM05D006878 ORTHO05D008579 7.5e-80 301.2 246 62.6
PSO478G0882 Papaver somniferum HOM05D006878 ORTHO05D008579 2.8e-79 299.3 267 58.4
Ah.02g119990 Amaranthus hybridus HOM05D006878 ORTHO05D008579 1.4e-78 297.0 234 63.7
CiPaw.04G036900 Carya illinoinensis HOM05D006878 ORTHO05D008579 1.6e-77 293.5 218 67.9
ECA238G1054 Erigeron canadensis HOM05D006878 ORTHO05D008579 2.7e-77 292.7 273 57.5
Lj1g0011001 Lotus japonicus HOM05D006878 ORTHO05D008579 5.9e-77 291.6 241 64.7
THA.LOC104821122 Tarenaya hassleriana HOM05D006878 ORTHO05D008579 1.7e-76 290.0 241 60.6
PSO017G0833 Papaver somniferum HOM05D006878 ORTHO05D008579 1.5e-75 287.0 265 58.9
CARHR199200 Cardamine hirsuta HOM05D006878 ORTHO05D008579 1.2e-74 283.9 254 56.7
Zm00001eb112900 Zea mays HOM05D006878 ORTHO05D008579 6.1e-74 281.6 284 53.9
SHI03949 Sapria himalayana HOM05D006878 ORTHO05D008579 2.3e-73 279.6 247 55.9
Os11g0498400 Oryza sativa ssp. japonica HOM05D006878 ORTHO05D008579 9.8e-72 274.2 271 55.7
EL10Ac6g15414 Beta vulgaris HOM05D006878 ORTHO05D008579 1.4e-70 270.4 252 56.7
CDE05G3687 Ceratophyllum demersum HOM05D000160 ORTHO05D000496 4.1e-70 268.9 230 63.0
Lju41C53T12 Lonicera japonica HOM05D006878 ORTHO05D008579 2.9e-68 262.7 240 59.6
Medtr7g029090 Medicago truncatula HOM05D006878 ORTHO05D008579 8.3e-63 244.6 184 66.3
Lalb_Chr22g0360351 Lupinus albus HOM05D006878 ORTHO05D008579 1.1e-59 234.2 177 67.8
SMO367G0946 Selaginella moellendorffii HOM05D006878 ORTHO05D008579 2.4e-54 216.5 224 54.0
Mapoly0041s0098 Marchantia polymorpha HOM05D006878 ORTHO05D008579 2.3e-52 209.9 291 41.6
Pp3c4_16130 Physcomitrium patens HOM05D006878 ORTHO05D008579 8.6e-52 208.0 256 44.9
Cpa.g.sc171.9 Carica papaya HOM05D006878 ORTHO05D008579 9.8e-48 194.5 133 69.2
Haze_14883 Corylus avellana HOM05D006878 ORTHO05D008579 9.8e-48 194.5 259 49.0
Ca_22814_v3 Cicer arietinum L. HOM05D006878 ORTHO05D008579 1.6e-42 177.2 248 48.0
CBR_g26294 Chara braunii HOM05D006878 ORTHO05D008579 4.7e-42 175.6 172 52.3
HPP92_022669 Vanilla planifolia HOM05D006878 ORTHO05D008579 4.7e-42 175.6 121 68.6
Medtr7g029095 Medicago truncatula HOM05D006878 ORTHO05D008579 1.0e-36 157.9 251 40.2
SEGI_11908 Sequoiadendron giganteum HOM05D006878 ORTHO05D008579 8.4e-31 138.3 120 55.8
FAN02G3703 Fragaria x ananassa HOM05D006878 ORTHO05D008579 7.8e-29 131.7 152 53.9
BraA03t09977Z Brassica rapa HOM05D006878 ORTHO05D008579 6.6e-28 128.6 126 57.9
CDE05G3052 Ceratophyllum demersum HOM05D006878 ORTHO05D008579 3.3e-19 99.8 119 48.7
Medtr7g029065 Medicago truncatula HOM05D004216 ORTHO05D004926 9.6e-19 98.2 109 56.9
PRCOL_00001512 Prasinoderma coloniale HOM05D006878 ORTHO05D008579 6.2e-18 95.5 139 34.5
FAN23G0458 Fragaria x ananassa HOM05D006878 ORTHO05D008579 4.0e-09 66.2 38 84.2
Actinidia36205 Actinidia chinensis HOM05D006878 ORTHO05D008579 9.0e-09 65.1 46 63.0
FAN23G0356 Fragaria x ananassa HOM05D006878 ORTHO05D008579 4.9e-07 59.3 46 54.3
Pp3c4_16200 Physcomitrium patens HOM05D006878 ORTHO05D008579 1.1e-06 58.2 133 34.6


User provided reference genes

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