Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g00860 Coffea canephora HOM05D001420 ORTHO05D009292 3.5e-89 331.6 174 100.0
GSVIVG01033089001 Vitis vinifera HOM05D001420 ORTHO05D009292 4.6e-73 278.1 174 81.6
Nitab4.5_0005161g0070 Nicotiana tabacum HOM05D001420 ORTHO05D009292 1.0e-72 276.9 174 80.5
Dinv25658 Davidia involucrata HOM05D001420 ORTHO05D002488 1.8e-72 276.2 173 82.1
Oeu035224.1 Olea europaea HOM05D001420 ORTHO05D009292 1.1e-71 273.5 174 81.6
vmacro18348 Vaccinium macrocarpon HOM05D001420 ORTHO05D009292 2.2e-70 269.2 174 79.3
Nitab4.5_0000559g0390 Nicotiana tabacum HOM05D001420 ORTHO05D009292 3.7e-70 268.5 181 76.2
MSTRG.3074 Avicennia marina HOM05D001420 ORTHO05D009292 6.3e-70 267.7 173 80.9
Hma1.2p1_1278F.1_g272270 Hydrangea macrophylla HOM05D001420 ORTHO05D009292 8.2e-70 267.3 174 78.2
CSS0004965 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 1.1e-69 266.9 174 78.2
Migut.F00060 Erythranthe guttata HOM05D001420 ORTHO05D009292 6.9e-69 264.2 171 77.2
PGR142G3591 Punica granatum HOM05D001420 ORTHO05D009292 9.0e-69 263.8 173 76.9
MD09G1010400 Malus domestica HOM05D001420 ORTHO05D009292 1.2e-68 263.5 174 77.6
Potri.001G329600 Populus trichocarpa HOM05D001420 ORTHO05D009292 1.7e-67 259.6 174 76.4
CSS0009369 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 2.9e-67 258.8 188 72.3
Actinidia04437 Actinidia chinensis HOM05D001420 ORTHO05D009292 3.8e-67 258.5 167 79.0
Prupe.3G306700 Prunus persica HOM05D001420 ORTHO05D009292 6.5e-67 257.7 174 75.9
SGA_v2.0_scaffold44G16915 Striga asiatica HOM05D001420 ORTHO05D009292 1.1e-66 256.9 171 75.4
Thecc.04G036700 Theobroma cacao HOM05D001420 ORTHO05D009292 2.5e-66 255.8 173 75.7
Duzib147G1300 Durio zibethinus HOM05D001420 ORTHO05D009292 3.2e-66 255.4 173 74.0
TAR622G0082 Trochodendron aralioides HOM05D001420 ORTHO05D009292 3.2e-66 255.4 166 75.9
RcHm_v2.0_Chr2g0175601 Rosa chinensis HOM05D001420 ORTHO05D009292 1.2e-65 253.4 170 75.3
Haze_14879 Corylus avellana HOM05D001420 ORTHO05D009292 4.6e-65 251.5 171 73.7
CANSAT64G1297 Cannabis sativa HOM05D001420 ORTHO05D009292 1.0e-64 250.4 174 73.6
Lj1g0001542 Lotus japonicus HOM05D001420 ORTHO05D009292 1.0e-64 250.4 174 72.4
PGSC0003DMG400022915 Solanum tuberosum HOM05D001420 ORTHO05D009292 1.3e-64 250.0 174 71.8
TPR.G38286 Trifolium pratense HOM05D001420 ORTHO05D009292 3.9e-64 248.4 170 71.2
Eucgr.I01645 Eucalyptus grandis HOM05D001420 ORTHO05D009292 6.7e-64 247.7 173 73.4
Glyma.19G091500 Glycine max HOM05D001420 ORTHO05D009292 8.7e-64 247.3 174 73.0
FvH4_6g53561 Fragaria vesca HOM05D001420 ORTHO05D009292 1.1e-63 246.9 170 73.5
MBI11_g44423_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 1.1e-63 246.9 170 71.8
Rhsim08G0042700 Rhododendron simsii HOM05D001420 ORTHO05D009292 1.9e-63 246.1 166 75.9
QL02p071311 Quercus lobata HOM05D001420 ORTHO05D009292 2.5e-63 245.7 170 73.5
Gohir.A09G036000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 3.3e-63 245.4 170 73.5
FAN09G1657 Fragaria x ananassa HOM05D001420 ORTHO05D009292 7.4e-63 244.2 170 71.8
SalBow4G1795 Salvia bowleyana HOM05D001420 ORTHO05D009292 1.7e-62 243.0 171 74.3
Cpa.g.sc171.11 Carica papaya HOM05D001420 ORTHO05D009292 2.2e-62 242.7 174 70.7
Gorai.006G042300 Gossypium raimondii HOM05D001420 ORTHO05D009292 2.2e-62 242.7 170 72.4
Medtr7g029105 Medicago truncatula HOM05D001420 ORTHO05D009292 2.8e-62 242.3 170 70.6
TWI60G0015 Tripterygium wilfordii HOM05D001420 ORTHO05D009292 2.8e-62 242.3 174 73.0
THA.LOC104825624 Tarenaya hassleriana HOM05D001420 ORTHO05D009292 3.7e-62 241.9 171 69.6
arahy.Tifrunner.gnm1.ann1.WDB61R Arachis hypogaea HOM05D001420 ORTHO05D009292 1.8e-61 239.6 175 70.9
FAN05G4256 Fragaria x ananassa HOM05D001420 ORTHO05D009292 1.8e-61 239.6 182 68.1
FAN14G1551 Fragaria x ananassa HOM05D001420 ORTHO05D000136 4.1e-61 238.4 164 73.2
AUR62017830 Chenopodium quinoa HOM05D001420 ORTHO05D009292 6.9e-61 237.7 169 69.2
Glyma.16G056200 Glycine max HOM05D001420 ORTHO05D009292 6.9e-61 237.7 170 70.0
Sc15g0002740 Simmondsia chinensis HOM05D001420 ORTHO05D009292 6.9e-61 237.7 164 72.6
Nn3g16459 Nelumbo nucifera HOM05D001420 ORTHO05D009292 9.1e-61 237.3 169 69.8
unitig_60.g25408 Utricularia gibba HOM05D001420 ORTHO05D009292 9.1e-61 237.3 171 71.9
VMungo1383G3091 Vigna mungo HOM05D001420 ORTHO05D009292 2.6e-60 235.7 173 69.4
AL5G16160 Arabidopsis lyrata HOM05D001420 ORTHO05D009292 3.4e-60 235.3 174 69.0
AUR62003518 Chenopodium quinoa HOM05D001420 ORTHO05D009292 4.5e-60 235.0 169 68.6
Psat3g174720 Pisum sativum HOM05D001420 ORTHO05D002488 4.5e-60 235.0 170 67.1
Manes.15G161200 Manihot esculenta HOM05D001420 ORTHO05D009292 1.7e-59 233.0 168 73.2
PSO478G4377 Papaver somniferum HOM05D001420 ORTHO05D009292 1.7e-59 233.0 164 68.3
BcaB04g19424 Brassica carinata HOM05D001420 ORTHO05D009292 5.0e-59 231.5 170 68.2
Thhalv10004992m.g Eutrema salsugineum HOM05D001420 ORTHO05D009292 6.5e-59 231.1 174 67.2
Aqoxy3G01555 Aquilegia oxysepala HOM05D001420 ORTHO05D009292 1.9e-58 229.6 164 70.7
AT3G27050 Arabidopsis thaliana HOM05D001420 ORTHO05D009292 9.4e-58 227.3 174 67.2
Sp2g16180 Schrenkiella parvula HOM05D001420 ORTHO05D009292 9.4e-58 227.3 174 67.2
BcaC04g23914 Brassica carinata HOM05D001420 ORTHO05D009292 1.2e-57 226.9 174 66.7
SalBow4G0299 Salvia bowleyana HOM05D001420 ORTHO05D009292 1.2e-57 226.9 202 62.9
Lalb_Chr22g0360361 Lupinus albus HOM05D001420 ORTHO05D009292 2.7e-57 225.7 166 69.3
A09p03260 Brassica napus HOM05D001420 ORTHO05D009292 7.9e-57 224.2 175 66.9
BraA09t35964Z Brassica rapa HOM05D001420 ORTHO05D009292 7.9e-57 224.2 175 66.9
Carub.0005s0529 Capsella rubella HOM05D001420 ORTHO05D009292 2.3e-56 222.6 170 65.3
C09p03460 Brassica napus HOM05D001420 ORTHO05D009292 3.0e-56 222.2 175 66.3
BolC9t53267H Brassica oleracea HOM05D001420 ORTHO05D009292 3.0e-56 222.2 175 66.3
PSO017G5378 Papaver somniferum HOM05D001420 ORTHO05D009292 3.9e-56 221.9 175 63.4
CARHR148270 Cardamine hirsuta HOM05D001420 ORTHO05D009292 6.7e-56 221.1 174 64.4
HanXRQChr17g0550091 Helianthus annuus HOM05D001420 ORTHO05D009292 6.7e-56 221.1 162 71.0
Aa31LG2G5540 Aethionema arabicum HOM05D001420 ORTHO05D009292 1.5e-55 219.9 174 64.4
Lsat_1_v5_gn_0_26060 Lactuca sativa HOM05D001420 ORTHO05D009292 2.6e-55 219.2 166 66.3
HPP92_009721 Vanilla planifolia HOM05D001420 ORTHO05D009292 4.4e-55 218.4 164 70.1
ECA246G1005 Erigeron canadensis HOM05D001420 ORTHO05D002488 1.3e-54 216.9 149 72.5
Peaxi162Scf00700g00030 Petunia axillaris HOM05D001420 ORTHO05D009292 1.3e-54 216.9 140 77.1
Sabra16G0211000 Salix brachista HOM05D001420 ORTHO05D009292 2.2e-54 216.1 249 52.6
ATR0561G272 Amborella trichopoda HOM05D001420 ORTHO05D009292 6.3e-54 214.5 164 66.5
Cfa007225 Carpinus fangiana HOM05D001420 ORTHO05D009292 2.4e-53 212.6 138 75.4
ClCG05G013550 Citrullus lanatus HOM05D001420 ORTHO05D009292 4.1e-53 211.8 171 66.7
Haze_14955 Corylus avellana HOM05D001420 ORTHO05D009292 5.3e-53 211.5 136 76.5
MBI11_g05328_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 9.1e-53 210.7 149 71.1
CDE05G2056 Ceratophyllum demersum HOM05D001420 ORTHO05D009292 4.5e-52 208.4 163 64.4
Atru.chr6.2574 Acer truncatum HOM05D001420 ORTHO05D009292 5.9e-52 208.0 141 73.8
Sed0020252 Sechium edule HOM05D001420 ORTHO05D009292 2.2e-51 206.1 169 65.1
CsaV3_3G026980 Cucumis sativus L. HOM05D001420 ORTHO05D009292 1.4e-50 203.4 166 65.1
Ciclev10017089m.g Citrus clementina HOM05D001420 ORTHO05D009292 2.5e-50 202.6 140 74.3
Os11g0488600 Oryza sativa ssp. japonica HOM05D001420 ORTHO05D009292 4.2e-50 201.8 177 61.6
Gohir.D09G037000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 7.2e-50 201.1 135 73.3
Dinv33335 Davidia involucrata HOM05D001420 ORTHO05D009292 9.4e-50 200.7 114 86.0
Phvul.001G093200 Phaseolus vulgaris HOM05D001420 ORTHO05D009292 2.0e-47 193.0 174 60.3
SEGI_21368 Sequoiadendron giganteum HOM05D001420 ORTHO05D009292 3.3e-47 192.2 166 57.2
Lj7C610G7 Lonicera japonica HOM05D001420 ORTHO05D009292 1.8e-45 186.4 117 79.5
RcHm_v2.0_Chr2g0175681 Rosa chinensis HOM05D001420 ORTHO05D009292 1.8e-45 186.4 138 71.0
Zm00001eb112760 Zea mays HOM05D001420 ORTHO05D009292 3.1e-45 185.7 195 52.3
MELO3C014890.2 Cucumis melo HOM05D001420 ORTHO05D009292 8.5e-43 177.6 138 66.7
AagrBONN_evm.TU.Sc2ySwM_228.3079 Anthoceros agrestis HOM05D001420 ORTHO05D009292 1.5e-39 166.8 164 48.8
Pp3c1_27230 Physcomitrium patens HOM05D001420 ORTHO05D009292 2.6e-39 166.0 177 50.3
MD16G1254400 Malus domestica HOM05D001420 ORTHO05D009292 4.4e-39 165.2 123 70.7
Ah.03g147520 Amaranthus hybridus HOM05D001420 ORTHO05D009292 7.5e-39 164.5 136 64.0
Pp3c14_4200 Physcomitrium patens HOM05D001420 ORTHO05D009292 7.5e-39 164.5 164 50.6
SMO119G0238 Selaginella moellendorffii HOM05D001420 ORTHO05D009292 3.2e-34 149.1 135 54.8
CDE05G0537 Ceratophyllum demersum HOM05D001420 ORTHO05D009292 2.0e-28 129.8 110 60.0
CBR_g762 Chara braunii HOM05D001420 ORTHO05D009292 2.0e-28 129.8 156 42.3
DCAR_021795 Daucus carota HOM05D001420 ORTHO05D009292 2.3e-24 116.3 88 67.0
CiPaw.03G055800 Carya illinoinensis HOM05D001420 ORTHO05D002488 2.8e-17 92.8 57 82.5
FAN02G0503 Fragaria x ananassa HOM05D001420 ORTHO05D009292 1.4e-13 80.5 66 63.6
Nitab4.5_0000525g0030 Nicotiana tabacum HOM05D001420 ORTHO05D009292 7.8e-12 74.7 42 81.0
Cre01.g049050 Chlamydomonas reinhardtii HOM05D001420 ORTHO05D009292 2.5e-10 69.7 143 30.8
Hund12739 Selenicereus undatus HOM05D001420 ORTHO05D009292 2.5e-10 69.7 48 75.0
Actinidia30872 Actinidia chinensis HOM05D005765 ORTHO05D002313 8.0e-09 64.7 97 44.3
Medtr1g051110 Medicago truncatula HOM05D001420 ORTHO05D009292 7.5e-07 58.2 83 44.6


User provided reference genes

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