Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g00400 Coffea canephora HOM05D003681 ORTHO05D004703 0.0e+00 1362.8 728 100.0
PGSC0003DMG400006971 Solanum tuberosum HOM05D003681 ORTHO05D004703 5.4e-309 1063.9 737 77.2
Dinv25694 Davidia involucrata HOM05D003681 ORTHO05D004703 6.6e-307 1057.0 746 77.7
Dinv33384 Davidia involucrata HOM05D003681 ORTHO05D004703 2.5e-306 1055.0 745 77.6
Sopen02g017120 Solanum pennellii HOM05D003681 ORTHO05D004703 2.1e-305 1052.0 737 76.5
PGSC0003DMG400020227 Solanum tuberosum HOM05D003681 ORTHO05D004703 1.3e-302 1042.7 732 76.8
CAN.G1057.25 Capsicum annuum HOM05D003681 ORTHO05D004703 1.7e-302 1042.3 737 76.5
CAN.G473.58 Capsicum annuum HOM05D003681 ORTHO05D004703 2.9e-302 1041.6 737 76.3
Solyc02g067990.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 1.1e-301 1039.6 722 76.7
Actinidia18423 Actinidia chinensis HOM05D003681 ORTHO05D004703 4.6e-300 1034.2 741 75.6
QL02p072923 Quercus lobata HOM05D003681 ORTHO05D004703 2.3e-299 1031.9 748 74.6
Lj7A605G77 Lonicera japonica HOM05D003681 ORTHO05D004703 5.1e-299 1030.8 732 79.4
Sopen02g038450 Solanum pennellii HOM05D003681 ORTHO05D004703 9.6e-298 1026.5 732 76.4
CSS0025950 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 1.3e-297 1026.2 743 75.1
MSTRG.3111 Avicennia marina HOM05D003681 ORTHO05D004703 8.1e-297 1023.5 737 77.6
Solyc02g093810.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 1.1e-296 1023.1 732 76.1
GSVIVG01001851001 Vitis vinifera HOM05D003681 ORTHO05D004703 1.4e-296 1022.7 748 74.7
Peaxi162Scf00420g00351 Petunia axillaris HOM05D003681 ORTHO05D004703 2.4e-296 1021.9 723 75.5
MD09G1017400 Malus domestica HOM05D003681 ORTHO05D004703 6.9e-296 1020.4 734 75.2
MD17G1018200 Malus domestica HOM05D003681 ORTHO05D004703 6.9e-296 1020.4 733 75.0
Migut.H00059 Erythranthe guttata HOM05D003681 ORTHO05D004703 1.5e-295 1019.2 735 76.5
CiPaw.04G033000 Carya illinoinensis HOM05D003681 ORTHO05D004703 2.0e-295 1018.8 747 73.5
Atru.chr6.2486 Acer truncatum HOM05D003681 ORTHO05D004703 1.3e-294 1016.1 732 73.5
SalBow1G2960 Salvia bowleyana HOM05D003681 ORTHO05D004703 4.9e-294 1014.2 716 78.4
SalBow1G7977 Salvia bowleyana HOM05D003681 ORTHO05D004703 4.9e-294 1014.2 716 78.4
Ciclev10014307m.g Citrus clementina HOM05D003681 ORTHO05D004703 8.4e-294 1013.4 720 74.4
Thecc.04G027500 Theobroma cacao HOM05D003681 ORTHO05D004703 2.5e-293 1011.9 731 74.0
Actinidia16950 Actinidia chinensis HOM05D003681 ORTHO05D004703 7.1e-293 1010.4 741 74.5
CANSAT64G2654 Cannabis sativa HOM05D003681 ORTHO05D004703 1.3e-291 1006.1 751 72.2
Manes.15G156300 Manihot esculenta HOM05D003681 ORTHO05D004703 3.0e-291 1005.0 736 73.1
Manes.17G107300 Manihot esculenta HOM05D003681 ORTHO05D004703 3.0e-291 1005.0 735 72.8
Nitab4.5_0000040g0490 Nicotiana tabacum HOM05D003681 ORTHO05D004703 1.1e-290 1003.0 741 74.1
CiPaw.03G050400 Carya illinoinensis HOM05D003681 ORTHO05D004703 5.7e-290 1000.7 747 72.4
Potri.001G337700 Populus trichocarpa HOM05D003681 ORTHO05D004703 1.3e-289 999.6 734 73.6
Potri.001G337600 Populus trichocarpa HOM05D003681 ORTHO05D004703 6.3e-289 997.3 735 74.6
Cpa.g.sc130.41 Carica papaya HOM05D003681 ORTHO05D004703 3.1e-288 995.0 747 71.6
Hma1.2p1_0279F.1_g112260 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 1.4e-285 986.1 780 70.8
SGA_v2.0_scaffold18G08242 Striga asiatica HOM05D003681 ORTHO05D004703 1.4e-285 986.1 749 72.6
Prupe.3G299500 Prunus persica HOM05D003681 ORTHO05D004703 9.3e-285 983.4 746 72.0
Gohir.D09G033600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 1.2e-284 983.0 751 70.7
TAR374G1530 Trochodendron aralioides HOM05D003681 ORTHO05D004703 1.2e-284 983.0 745 72.1
Gorai.006G038600 Gossypium raimondii HOM05D003681 ORTHO05D004703 1.6e-284 982.6 751 70.7
TWI12G0555 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 2.1e-284 982.2 746 71.3
Nitab4.5_0008718g0020 Nicotiana tabacum HOM05D003681 ORTHO05D004703 7.9e-284 980.3 727 73.6
Phvul.004G057300 Phaseolus vulgaris HOM05D003681 ORTHO05D004703 8.7e-283 976.9 737 72.3
Nitab4.5_0001863g0130 Nicotiana tabacum HOM05D003681 ORTHO05D004703 1.5e-282 976.1 723 73.0
Oeu050433.3 Olea europaea HOM05D003681 ORTHO05D004703 1.9e-282 975.7 744 72.3
CSS0035050 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 2.5e-282 975.3 734 72.8
Gohir.A11G065000 Gossypium hirsutum HOM05D003681 ORTHO05D004703 9.7e-282 973.4 733 71.1
Duzib187G0106 Durio zibethinus HOM05D003681 ORTHO05D004703 6.3e-281 970.7 731 71.1
Gohir.D11G069300 Gossypium hirsutum HOM05D003681 ORTHO05D004703 2.4e-280 968.8 733 72.0
Peaxi162Scf00080g01724 Petunia axillaris HOM05D003681 ORTHO05D004703 2.4e-280 968.8 723 73.3
TWI36G0744 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 4.1e-280 968.0 746 70.0
Gorai.007G074100 Gossypium raimondii HOM05D003681 ORTHO05D004703 5.3e-280 967.6 733 72.2
Cfa007279 Carpinus fangiana HOM05D003681 ORTHO05D004703 2.0e-279 965.7 719 72.5
Haze_14813 Corylus avellana HOM05D003681 ORTHO05D004703 2.0e-279 965.7 758 69.9
Gohir.A09G033400 Gossypium hirsutum HOM05D003681 ORTHO05D004703 2.6e-279 965.3 751 69.5
VMungo0464G1197 Vigna mungo HOM05D003681 ORTHO05D004703 2.6e-279 965.3 733 72.2
PGR142G3554 Punica granatum HOM05D003681 ORTHO05D004703 3.4e-279 964.9 747 70.0
Sabra16G0218500 Salix brachista HOM05D003681 ORTHO05D004703 4.5e-279 964.5 738 71.4
Eucgr.I01693 Eucalyptus grandis HOM05D003681 ORTHO05D004703 1.7e-278 962.6 746 70.2
Sc03g0006880 Simmondsia chinensis HOM05D003681 ORTHO05D004703 6.5e-278 960.7 738 70.1
Actinidia36165 Actinidia chinensis HOM05D003681 ORTHO05D004703 8.5e-278 960.3 727 73.6
Glyma.05G073400 Glycine max HOM05D003681 ORTHO05D004703 1.1e-277 959.9 734 71.7
Glyma.19G077600 Glycine max HOM05D003681 ORTHO05D004703 3.2e-277 958.4 735 71.8
TAR622G1195 Trochodendron aralioides HOM05D003681 ORTHO05D004703 4.2e-277 958.0 749 71.0
Gohir.D10G085200 Gossypium hirsutum HOM05D003681 ORTHO05D004703 3.6e-276 954.9 733 70.1
arahy.Tifrunner.gnm1.ann1.0QF2GW Arachis hypogaea HOM05D003681 ORTHO05D004703 3.0e-275 951.8 732 71.7
Gorai.011G093100 Gossypium raimondii HOM05D003681 ORTHO05D004703 3.0e-275 951.8 733 70.1
Lj2g0006828 Lotus japonicus HOM05D003681 ORTHO05D004703 3.0e-275 951.8 733 70.8
Oeu058755.3 Olea europaea HOM05D003681 ORTHO05D004703 1.1e-274 949.9 777 68.3
vmacro05923 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 2.2e-273 945.7 728 70.9
COL.COLO4_29274 Corchorus olitorius HOM05D003681 ORTHO05D004703 3.7e-273 944.9 725 70.5
RcHm_v2.0_Chr2g0174171 Rosa chinensis HOM05D003681 ORTHO05D004703 1.1e-272 943.3 746 70.4
CsaV3_3G027310 Cucumis sativus L. HOM05D003681 ORTHO05D004703 1.2e-271 939.9 735 70.3
HanXRQChr07g0199161 Helianthus annuus HOM05D003681 ORTHO05D004703 2.6e-271 938.7 730 69.5
vmacro18313 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 7.7e-271 937.2 740 69.6
Sabra16G0218400 Salix brachista HOM05D003681 ORTHO05D004703 2.2e-270 935.6 721 71.2
ECA238G4183 Erigeron canadensis HOM05D003681 ORTHO05D004703 3.8e-270 934.9 710 70.3
ClCG05G013220 Citrullus lanatus HOM05D003681 ORTHO05D004703 1.9e-269 932.6 734 70.2
Lalb_Chr02g0157941 Lupinus albus HOM05D003681 ORTHO05D004703 5.5e-269 931.0 731 69.2
Sed0015235 Sechium edule HOM05D003681 ORTHO05D004703 2.1e-268 929.1 735 69.4
Nn4g22444 Nelumbo nucifera HOM05D003681 ORTHO05D004703 2.7e-268 928.7 749 69.0
Aa31LG9G900 Aethionema arabicum HOM05D003681 ORTHO05D004703 2.3e-267 925.6 748 67.9
CSS0007013 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 6.7e-267 924.1 697 72.5
SGA_v2.0_scaffold135G34941 Striga asiatica HOM05D003681 ORTHO05D004703 6.7e-267 924.1 769 68.8
TAR371G0788 Trochodendron aralioides HOM05D003681 ORTHO05D004703 8.8e-267 923.7 746 68.0
AT5G40740 Arabidopsis thaliana HOM05D003681 ORTHO05D004703 2.0e-266 922.5 745 67.8
Carub.0007s3474 Capsella rubella HOM05D003681 ORTHO05D004703 2.0e-266 922.5 746 67.6
AL7G49000 Arabidopsis lyrata HOM05D003681 ORTHO05D004703 7.4e-266 920.6 745 68.2
Sed0021158 Sechium edule HOM05D003681 ORTHO05D004703 3.7e-265 918.3 734 68.8
Sp7g01150 Schrenkiella parvula HOM05D003681 ORTHO05D004703 4.8e-265 917.9 746 68.2
Rhsim10G0011100 Rhododendron simsii HOM05D003681 ORTHO05D004703 1.1e-264 916.8 734 69.2
BraA07t29742Z Brassica rapa HOM05D003681 ORTHO05D004703 7.0e-264 914.1 744 67.3
Thhalv10027657m.g Eutrema salsugineum HOM05D003681 ORTHO05D004703 9.1e-264 913.7 746 68.0
CARHR213770 Cardamine hirsuta HOM05D003681 ORTHO05D004703 1.2e-263 913.3 746 67.4
BolC6t37131H Brassica oleracea HOM05D003681 ORTHO05D004703 1.6e-263 912.9 744 67.2
THA.LOC104805345 Tarenaya hassleriana HOM05D003681 ORTHO05D004703 2.6e-263 912.1 749 67.6
Aqoxy3G01435 Aquilegia oxysepala HOM05D003681 ORTHO05D004703 3.5e-263 911.8 748 67.8
A07p20510 Brassica napus HOM05D003681 ORTHO05D004703 3.8e-262 908.3 744 67.5
Lalb_Chr21g0317601 Lupinus albus HOM05D003681 ORTHO05D004703 3.8e-262 908.3 731 69.5
BraA04t17035Z Brassica rapa HOM05D003681 ORTHO05D004703 4.2e-261 904.8 745 66.6
Medtr6g022730 Medicago truncatula HOM05D003681 ORTHO05D004703 5.5e-261 904.4 733 69.3
Psat1g082400 Pisum sativum HOM05D003681 ORTHO05D004703 7.2e-261 904.0 732 68.2
FAN14G5093 Fragaria x ananassa HOM05D003681 ORTHO05D004703 9.4e-261 903.7 763 67.2
FvH4_6g52640 Fragaria vesca HOM05D003681 ORTHO05D004703 1.2e-260 903.3 745 68.2
PSO017G2495 Papaver somniferum HOM05D003681 ORTHO05D004703 1.2e-260 903.3 744 68.4
EL10Ac4g08610 Beta vulgaris HOM05D003681 ORTHO05D004703 3.6e-260 901.7 726 67.8
BcaB02g07929 Brassica carinata HOM05D003681 ORTHO05D004703 4.7e-260 901.4 744 66.9
C06p19360 Brassica napus HOM05D003681 ORTHO05D004703 1.4e-259 899.8 744 66.7
A04p13760 Brassica napus HOM05D003681 ORTHO05D004703 3.0e-259 898.7 747 66.3
BcaC08g44481 Brassica carinata HOM05D003681 ORTHO05D004703 4.0e-259 898.3 744 66.5
Rhsim08G0046300 Rhododendron simsii HOM05D003681 ORTHO05D004703 4.0e-259 898.3 751 67.2
Hund06716 Selenicereus undatus HOM05D003681 ORTHO05D004703 4.0e-259 898.3 727 68.1
BolC4t26356H Brassica oleracea HOM05D003681 ORTHO05D004703 5.2e-259 897.9 745 66.2
C04p47540 Brassica napus HOM05D003681 ORTHO05D004703 8.8e-259 897.1 745 66.3
FAN09G4630 Fragaria x ananassa HOM05D003681 ORTHO05D004703 2.0e-258 896.0 763 66.7
BcaB06g27549 Brassica carinata HOM05D003681 ORTHO05D004703 9.7e-258 893.6 731 67.7
FAN02G4174 Fragaria x ananassa HOM05D003681 ORTHO05D004703 2.8e-257 892.1 745 67.8
PSO478G5006 Papaver somniferum HOM05D003681 ORTHO05D004703 1.4e-256 889.8 739 68.2
FAN05G4404 Fragaria x ananassa HOM05D003681 ORTHO05D004703 1.6e-255 886.3 790 64.7
AUR62036017 Chenopodium quinoa HOM05D003681 ORTHO05D004703 3.5e-255 885.2 725 66.6
MBI11_g11079_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 1.0e-254 883.6 753 65.7
Sc03g0007020 Simmondsia chinensis HOM05D003681 ORTHO05D004703 4.8e-249 864.8 738 65.2
Lsat_1_v5_gn_2_93641 Lactuca sativa HOM05D003681 ORTHO05D004703 6.1e-244 847.8 738 64.1
Ca_04403_v3 Cicer arietinum L. HOM05D003681 ORTHO05D004703 2.8e-241 839.0 718 65.9
AUR62035509 Chenopodium quinoa HOM05D003681 ORTHO05D004703 7.0e-240 834.3 710 64.8
Lj1g0019639 Lotus japonicus HOM05D003681 ORTHO05D004703 1.0e-238 830.5 737 63.1
TPR.G36528 Trifolium pratense HOM05D003681 ORTHO05D004703 5.7e-234 814.7 788 61.2
Os02g0329300 Oryza sativa ssp. japonica HOM05D003681 ORTHO05D004703 7.8e-223 777.7 744 61.3
Gohir.A10G160600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 1.3e-214 750.4 536 75.0
CDE07G0234 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 8.9e-211 737.6 751 57.3
Zm00001eb235200 Zea mays HOM05D003681 ORTHO05D004703 1.3e-206 723.8 715 59.3
unitig_21.g20482 Utricularia gibba HOM05D003681 ORTHO05D004703 3.0e-206 722.6 759 57.0
HPP92_006269 Vanilla planifolia HOM05D003681 ORTHO05D004703 3.0e-206 722.6 737 58.2
ATR0824G011 Amborella trichopoda HOM05D003681 ORTHO05D004703 8.1e-204 714.5 728 59.1
unitig_744.g24365 Utricularia gibba HOM05D003681 ORTHO05D004703 5.6e-189 665.2 672 58.5
CDE04G2610 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 2.0e-186 656.8 721 54.6
TAR374G1355 Trochodendron aralioides HOM05D003681 ORTHO05D004703 1.9e-184 650.2 437 78.9
DCAR_011289 Daucus carota HOM05D003681 ORTHO05D004703 1.9e-173 613.6 570 63.9
QL07p006188 Quercus lobata HOM05D003681 ORTHO05D004703 1.7e-148 530.8 373 77.2
Mapoly0032s0042 Marchantia polymorpha HOM05D003681 ORTHO05D004703 2.3e-134 483.8 732 43.6
SMO367G0854 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 1.1e-128 464.9 602 47.7
SHI03860 Sapria himalayana HOM05D003681 ORTHO05D004703 9.8e-125 451.8 429 59.4
Pp3c13_14720 Physcomitrium patens HOM05D003681 ORTHO05D004703 1.4e-115 421.4 737 40.8
Pp3c13_14730 Physcomitrium patens HOM05D003681 ORTHO05D004703 1.4e-115 421.4 737 40.8
Pp3c4_18170 Physcomitrium patens HOM05D003681 ORTHO05D004703 1.4e-115 421.4 742 40.2
QL09p045970 Quercus lobata HOM05D003681 ORTHO05D004703 2.0e-114 417.5 304 74.7
MELO3C014854.2 Cucumis melo HOM05D003681 ORTHO05D004703 3.3e-112 410.2 438 56.6
Pp3c3_25790 Physcomitrium patens HOM05D003681 ORTHO05D004703 3.6e-111 406.8 499 48.5
SEGI_13919 Sequoiadendron giganteum HOM05D003681 ORTHO05D004703 1.9e-96 357.8 366 57.7
SGA_v2.0_scaffold135G34947 Striga asiatica HOM05D003681 ORTHO05D004703 3.1e-94 350.5 258 73.3
Actinidia35791 Actinidia chinensis HOM05D003681 ORTHO05D004703 1.5e-85 321.6 276 67.4
CBR_g66670 Chara braunii HOM05D003681 ORTHO05D004703 3.4e-85 320.5 563 39.4
MBI06_g35146_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 4.2e-83 313.5 357 55.7
Nn3g16565 Nelumbo nucifera HOM05D003681 ORTHO05D004703 1.1e-75 288.9 183 83.1
RcHm_v2.0_Chr2g0109021 Rosa chinensis HOM05D002608 ORTHO05D004703 1.3e-73 282.0 267 58.8
SMO367G0212 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 1.0e-65 255.8 562 37.2
AagrBONN_evm.TU.Sc2ySwM_228.437 Anthoceros agrestis HOM05D003681 ORTHO05D004703 2.3e-65 254.6 310 46.8
TAR629G3339 Trochodendron aralioides HOM05D003681 ORTHO05D030546 1.6e-55 221.9 626 31.0
RcHm_v2.0_Chr5g0047251 Rosa chinensis HOM05D002608 ORTHO05D021346 8.5e-52 209.5 452 38.3
SMO367G0417 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 1.2e-50 205.7 583 34.1
Lsat_1_v5_gn_3_79520 Lactuca sativa HOM05D003681 ORTHO05D004703 8.5e-44 183.0 189 58.2
DCAR_011288 Daucus carota HOM05D003681 ORTHO05D004703 1.1e-38 166.0 170 55.3
SMO275G0043 Selaginella moellendorffii HOM05D003681 ORTHO05D030546 5.0e-36 157.1 131 65.6
RcHm_v2.0_Chr6g0248701 Rosa chinensis HOM05D002608 ORTHO05D013040 4.2e-35 154.1 108 71.3
Hma1.2p1_0026F.1_g016370 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 5.2e-33 147.1 226 43.4
RcHm_v2.0_Chr2g0166591 Rosa chinensis HOM05D003681 ORTHO05D004703 8.2e-31 139.8 76 96.1
SHI03859 Sapria himalayana HOM05D000105 ORTHO05D000023 7.7e-29 133.3 300 36.3
BcaC05g26953 Brassica carinata HOM05D003681 ORTHO05D024003 5.0e-28 130.6 70 84.3
C05p28020 Brassica napus HOM05D003681 ORTHO05D024003 5.0e-28 130.6 70 84.3
RcHm_v2.0_Chr5g0045391 Rosa chinensis HOM05D003681 ORTHO05D004703 1.1e-27 129.4 95 70.5
RcHm_v2.0_Chr2g0096321 Rosa chinensis HOM05D003681 ORTHO05D004703 4.2e-27 127.5 95 69.5
BolC5t31529H Brassica oleracea HOM05D003681 ORTHO05D024003 8.0e-26 123.2 70 82.9
vmacro18312 Vaccinium macrocarpon HOM05D004367 ORTHO05D004937 2.2e-23 115.2 174 39.7
RcHm_v2.0_Chr6g0248711 Rosa chinensis HOM05D003681 ORTHO05D030546 1.5e-19 102.4 51 94.1
ECA247G3396 Erigeron canadensis HOM05D003681 ORTHO05D004703 3.2e-19 101.3 71 69.0
Lsat_1_v5_gn_2_93681 Lactuca sativa HOM05D006130 ORTHO05D007491 3.6e-18 97.8 50 96.0
MBI02_g11376_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D024003 1.4e-17 95.9 60 71.7
SEGI_03694 Sequoiadendron giganteum HOM05D003681 ORTHO05D024003 3.4e-16 91.3 60 66.7
Hma1.2p1_0006F.1_g004670 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 6.3e-15 87.0 243 32.5
SEGI_23209 Sequoiadendron giganteum HOM05D003681 ORTHO05D004703 8.3e-15 86.7 297 31.6
SMO275G0001 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 1.6e-13 82.4 84 58.3
SMO367G0834 Selaginella moellendorffii HOM05D003681 ORTHO05D030546 5.9e-13 80.5 140 40.7
FAN09G4065 Fragaria x ananassa HOM05D029681 ORTHO05D029391 2.8e-07 61.6 85 54.1


User provided reference genes

Program Settings