Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g00370 Coffea canephora HOM05D004846 ORTHO05D005630 0.0e+00 2355.1 1173 100.0
Dinv25698 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1626.7 1142 70.8
Oeu062399.1 Olea europaea HOM05D004846 ORTHO05D005630 0.0e+00 1560.4 1141 68.8
GSVIVG01027213001 Vitis vinifera HOM05D004846 ORTHO05D005630 0.0e+00 1546.6 1128 68.4
Migut.H00055 Erythranthe guttata HOM05D004846 ORTHO05D005630 0.0e+00 1545.0 1115 69.7
Actinidia05946 Actinidia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1537.7 1117 68.6
CSS0030635 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 0.0e+00 1534.2 1119 68.5
Sopen02g038410 Solanum pennellii HOM05D004846 ORTHO05D005630 0.0e+00 1529.2 1127 68.4
Solyc02g093770.3 Solanum lycopersicum HOM05D004846 ORTHO05D005630 0.0e+00 1528.8 1127 68.6
Potri.001G338000 Populus trichocarpa HOM05D004846 ORTHO05D005630 0.0e+00 1518.8 1117 67.1
Nitab4.5_0001863g0210 Nicotiana tabacum HOM05D004846 ORTHO05D005630 0.0e+00 1510.4 1116 68.4
QL02p072992 Quercus lobata HOM05D004846 ORTHO05D005630 0.0e+00 1498.8 1122 66.8
TAR371G0224 Trochodendron aralioides HOM05D004846 ORTHO05D005630 0.0e+00 1494.2 1117 67.3
Cfa007283 Carpinus fangiana HOM05D004846 ORTHO05D005630 0.0e+00 1489.6 1129 66.3
CAN.G473.55 Capsicum annuum HOM05D004846 ORTHO05D005630 0.0e+00 1486.1 1117 67.8
Ciclev10014098m.g Citrus clementina HOM05D004846 ORTHO05D005630 0.0e+00 1471.4 1119 66.0
Atru.chr6.2483 Acer truncatum HOM05D004846 ORTHO05D005630 0.0e+00 1467.2 1118 66.7
Glyma.19G082100 Glycine max HOM05D004846 ORTHO05D005630 0.0e+00 1448.3 1118 64.0
Rhsim10G0011500 Rhododendron simsii HOM05D004846 ORTHO05D005630 0.0e+00 1448.3 1157 65.3
Sabra16G0218700 Salix brachista HOM05D004846 ORTHO05D005630 0.0e+00 1445.6 1183 61.7
MSTRG.24063 Avicennia marina HOM05D004846 ORTHO05D005630 0.0e+00 1435.2 1125 65.5
Prupe.3G299200 Prunus persica HOM05D004846 ORTHO05D005630 0.0e+00 1430.2 1117 64.3
TWI15G0720 Tripterygium wilfordii HOM05D004846 ORTHO05D005630 0.0e+00 1429.8 1121 64.5
Lalb_Chr24g0403411 Lupinus albus HOM05D004846 ORTHO05D005630 0.0e+00 1428.7 1107 64.2
CANSAT64G0871 Cannabis sativa HOM05D004846 ORTHO05D005630 0.0e+00 1426.0 1115 63.8
CsaV3_3G046520 Cucumis sativus L. HOM05D004846 ORTHO05D005630 0.0e+00 1425.2 1115 64.8
Lj1g0007607 Lotus japonicus HOM05D004846 ORTHO05D005630 0.0e+00 1422.1 1119 63.8
VMungo1127G0826 Vigna mungo HOM05D004846 ORTHO05D005630 0.0e+00 1420.2 1128 62.8
vmacro05920 Vaccinium macrocarpon HOM05D004846 ORTHO05D005630 0.0e+00 1416.7 1128 64.6
Hund19592 Selenicereus undatus HOM05D004846 ORTHO05D005630 0.0e+00 1415.6 1115 62.2
Medtr7g037280 Medicago truncatula HOM05D004846 ORTHO05D005630 0.0e+00 1412.5 1112 62.8
Thecc.04G024900 Theobroma cacao HOM05D004846 ORTHO05D005630 0.0e+00 1409.8 1124 64.1
Peaxi162Scf00420g00255 Petunia axillaris HOM05D004846 ORTHO05D005630 0.0e+00 1409.4 1103 65.7
Sc09g0010530 Simmondsia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1406.7 1130 62.6
MBI15_g38527_MAGBIO Magnolia biondii HOM05D004846 ORTHO05D005630 0.0e+00 1401.7 1149 63.0
Lj3C906G17 Lonicera japonica HOM05D004846 ORTHO05D005630 0.0e+00 1400.2 1119 65.1
MD09G1017700 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1394.8 1118 63.2
Lsat_1_v5_gn_5_21981 Lactuca sativa HOM05D004846 ORTHO05D005630 0.0e+00 1392.1 1124 63.3
Sed0008655 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1391.7 1115 62.9
ClCG05G017040 Citrullus lanatus HOM05D004846 ORTHO05D005630 0.0e+00 1391.3 1182 60.7
Gohir.D10G085400 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1388.6 1115 63.9
PSO210G2938 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1387.5 1116 62.5
Eucgr.J02281 Eucalyptus grandis HOM05D004846 ORTHO05D005630 0.0e+00 1385.5 1117 63.5
HanXRQChr02g0054051 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1382.1 1117 63.0
PSO210G2073 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1381.7 1115 62.3
Gorai.011G093300 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1380.9 1115 63.5
ECA233G5463 Erigeron canadensis HOM05D004846 ORTHO05D005630 0.0e+00 1380.2 1117 62.9
MD17G1018500 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1378.6 1117 62.8
SGA_v2.0_scaffold66G22277 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1374.8 1186 60.8
HanXRQChr07g0193151 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1374.4 1114 62.1
PGR083G2372 Punica granatum HOM05D004846 ORTHO05D005630 0.0e+00 1373.2 1124 61.9
Duzib187G0011 Durio zibethinus HOM05D004846 ORTHO05D005630 0.0e+00 1369.0 1067 65.1
AUR62031596 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1359.4 1120 61.4
Ah.10g035510 Amaranthus hybridus HOM05D004846 ORTHO05D005630 0.0e+00 1358.2 1115 61.6
Sed0014062 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1356.3 1116 62.1
AUR62012470 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1354.0 1137 60.9
Dinv00597 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1354.0 915 72.3
arahy.Tifrunner.gnm1.ann1.QFX8QT Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1349.3 1125 59.5
FvH4_6g52480 Fragaria vesca HOM05D004846 ORTHO05D005630 0.0e+00 1347.0 1117 61.8
arahy.Tifrunner.gnm1.ann1.EI4BFE Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1346.3 1125 59.4
FAN02G3962 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1343.9 1117 61.3
THA.LOC104805347 Tarenaya hassleriana HOM05D004846 ORTHO05D005630 0.0e+00 1342.0 1115 60.8
FAN05G3122 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1341.3 1129 61.0
FAN14G2722 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1341.3 1117 61.5
RcHm_v2.0_Chr2g0174121 Rosa chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1340.1 1118 61.6
EL10Ac2g04126 Beta vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1338.6 1173 58.6
TPR.G9064 Trifolium pratense HOM05D004846 ORTHO05D005630 0.0e+00 1331.6 1128 60.2
DCAR_013672 Daucus carota HOM05D004846 ORTHO05D005630 0.0e+00 1326.6 1116 60.3
FAN09G4064 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1315.8 1117 60.4
Gorai.006G037800 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1313.9 1098 60.7
ATR0751G144 Amborella trichopoda HOM05D004846 ORTHO05D005630 0.0e+00 1313.5 1202 57.8
Gohir.D09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1313.5 1098 60.7
Haze_14810 Corylus avellana HOM05D004846 ORTHO05D005630 0.0e+00 1312.4 1174 59.9
Gohir.A09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1306.6 1098 60.7
SalBow2G2965 Salvia bowleyana HOM05D004846 ORTHO05D005630 0.0e+00 1299.3 1170 59.6
SGA_v2.0_scaffold135G34938 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1299.3 1006 65.2
Cpa.g.sc130.45 Carica papaya HOM05D004846 ORTHO05D005630 0.0e+00 1297.7 1142 60.1
Thhalv10003555m.g Eutrema salsugineum HOM05D004846 ORTHO05D005630 0.0e+00 1292.3 1097 60.2
Sp2g16490 Schrenkiella parvula HOM05D004846 ORTHO05D005630 0.0e+00 1288.5 1097 59.4
BcaC06g33832 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1285.8 1114 59.6
C07p36370 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1280.4 1118 59.7
A06p41290 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1278.8 1122 59.6
BraA06t27054Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1278.8 1122 59.6
BolC7t44153H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1278.5 1123 59.1
Carub.0005s0560 Capsella rubella HOM05D004846 ORTHO05D005630 0.0e+00 1277.3 1113 59.0
BcaC06g31008 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1270.4 1115 60.0
AT3G27325 Arabidopsis thaliana HOM05D004846 ORTHO05D005630 0.0e+00 1263.8 1108 59.3
AL5G16590 Arabidopsis lyrata HOM05D004846 ORTHO05D005630 0.0e+00 1260.0 1109 59.3
Manes.15G092600 Manihot esculenta HOM05D004846 ORTHO05D005630 0.0e+00 1250.7 955 65.4
C02p54070 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1249.2 1101 59.2
CiPaw.03G050100 Carya illinoinensis HOM05D004846 ORTHO05D005630 0.0e+00 1247.3 957 65.2
BolC2t11469H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1244.2 1103 58.9
CARHR040910 Cardamine hirsuta HOM05D004846 ORTHO05D005630 0.0e+00 1242.6 1097 58.4
A02p35330 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1233.4 1104 58.5
MELO3C003688.2 Cucumis melo HOM05D004846 ORTHO05D005630 0.0e+00 1233.4 1019 62.5
Os09g0266400 Oryza sativa ssp. japonica HOM05D004846 ORTHO05D005630 0.0e+00 1231.1 1119 57.0
Aa31LG2G5360 Aethionema arabicum HOM05D004846 ORTHO05D005630 0.0e+00 1227.6 1119 56.7
PGSC0003DMG403020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 0.0e+00 1226.8 904 68.6
BraA02t08536Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1221.1 1111 57.9
HPP92_021915 Vanilla planifolia HOM05D004846 ORTHO05D005630 0.0e+00 1199.5 1122 55.3
COL.COLO4_29272 Corchorus olitorius HOM05D004846 ORTHO05D005630 0.0e+00 1198.7 1005 62.1
Phvul.008G148206 Phaseolus vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1197.6 960 62.8
Hma1.2p1_0279F.1_g112220 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 0.0e+00 1167.9 793 71.2
Psat3g169160 Pisum sativum HOM05D004846 ORTHO05D005630 0.0e+00 1159.4 833 67.7
Gohir.A10G160700 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1151.3 953 62.4
PGSC0003DMG402020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 0.0e+00 1144.8 765 72.3
CDE01G0149 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 0.0e+00 1125.2 1088 55.0
Mapoly0133s0025 Marchantia polymorpha HOM05D004846 ORTHO05D005630 0.0e+00 1076.6 1152 50.7
CDE02G2253 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 1.0e-288 997.3 1034 52.3
Glyma.16G063300 Glycine max HOM05D004846 ORTHO05D005630 2.6e-284 982.6 798 61.5
Pp3c3_36830 Physcomitrium patens HOM05D004846 ORTHO05D005630 2.2e-275 953.0 1128 47.4
Nn7g36106 Nelumbo nucifera HOM05D004846 ORTHO05D005630 1.2e-270 937.2 647 70.8
AagrBONN_evm.TU.Sc2ySwM_228.569 Anthoceros agrestis HOM05D004846 ORTHO05D005630 1.7e-267 926.8 1013 49.7
Pp3c12_23520 Physcomitrium patens HOM05D004846 ORTHO05D005630 5.4e-266 921.8 1151 46.0
Zm00001eb308720 Zea mays HOM05D004846 ORTHO05D005630 1.3e-243 847.4 819 53.6
SMO119G0307 Selaginella moellendorffii HOM05D004846 ORTHO05D005630 7.8e-241 838.2 1105 42.7
Pp3c14_5780 Physcomitrium patens HOM05D004846 ORTHO05D005630 7.9e-201 705.3 983 42.7
unitig_1.g29345 Utricularia gibba HOM05D004846 ORTHO05D005630 9.7e-191 671.8 1109 39.0
unitig_747.g22069 Utricularia gibba HOM05D004846 ORTHO05D005630 1.4e-168 598.2 1130 36.5
Dinv33387 Davidia involucrata HOM05D004846 ORTHO05D005630 1.9e-162 577.8 445 64.7
SHI03857 Sapria himalayana HOM05D004846 ORTHO05D000023 2.0e-156 557.8 458 59.8
Ca_26120_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 1.2e-140 505.4 531 51.6
SEGI_08787 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 6.9e-120 436.4 332 62.7
unitig_748.g6968 Utricularia gibba HOM05D004846 ORTHO05D005630 3.1e-104 384.4 295 64.4
CBR_g922 Chara braunii HOM05D004846 ORTHO05D005630 6.4e-102 376.7 1146 27.1
unitig_748.g6967 Utricularia gibba HOM05D004846 ORTHO05D005630 1.8e-99 368.6 520 43.8
Ca_14683_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 3.8e-78 297.7 233 64.4
Actinidia36162 Actinidia chinensis HOM05D004846 ORTHO05D005630 3.2e-77 294.7 383 43.9
SEGI_28297 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 1.2e-76 292.7 377 46.7
Actinidia36160 Actinidia chinensis HOM05D004846 ORTHO05D005630 2.2e-70 271.9 231 62.3
CSS0035751 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 2.2e-62 245.4 255 53.7
CSS0049777 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 6.5e-62 243.8 261 52.1
Hma1.2p1_0279F.1_g112210 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 1.5e-61 242.7 209 61.2
CSS0005966 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.1e-53 216.5 223 54.3
CSS0015891 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 2.5e-53 215.3 209 55.0
CSS0025976 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.3e-46 193.0 175 56.0
CSS0029627 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.3e-46 193.0 175 56.0
CSS0035603 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.3e-46 193.0 175 56.0
Cfa027235 Carpinus fangiana HOM05D004846 ORTHO05D005630 2.3e-46 192.2 354 36.2
CSS0050182 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 5.0e-46 191.0 175 55.4
CSS0012369 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.1e-45 189.9 175 55.4
CSS0012376 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 9.2e-40 170.2 240 42.9
Nn7g36110 Nelumbo nucifera HOM05D004846 ORTHO05D005630 1.6e-39 169.5 143 60.1
C07p36330 Brassica napus HOM05D004846 ORTHO05D017504 8.6e-38 163.7 245 42.9
BolC7t44149H Brassica oleracea HOM05D004846 ORTHO05D017504 1.9e-37 162.5 245 42.4
CSS0003755 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 2.1e-36 159.1 175 49.7
BcaC06g33836 Brassica carinata HOM05D004846 ORTHO05D017504 2.3e-35 155.6 245 41.6
MCO12G012 Micromonas commoda HOM05D004846 ORTHO05D005630 2.7e-31 142.1 363 30.0
Dinv00598 Davidia involucrata HOM05D004846 ORTHO05D005630 7.5e-26 124.0 92 64.1
Eucgr.J00244 Eucalyptus grandis HOM05D004846 ORTHO05D005630 3.0e-22 112.1 129 47.3
SEGI_31417 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 3.3e-21 108.6 103 56.3
Ca_26612_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 7.3e-21 107.5 234 33.8
Ca_30652_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 5.2e-19 101.3 81 58.0
Cre08.g363950 Chlamydomonas reinhardtii HOM05D004846 ORTHO05D005630 2.0e-18 99.4 297 27.9
Cpa.g.c47899 Carica papaya HOM05D004846 ORTHO05D005630 7.8e-15 87.4 58 63.8
Ca_14625_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 6.6e-14 84.3 77 55.8
HanXRQChr02g0047501 Helianthus annuus HOM05D004846 ORTHO05D005630 1.6e-12 79.7 55 69.1


User provided reference genes

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