Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g00360 Coffea canephora HOM05D006998 ORTHO05D008733 3.6e-73 278.1 137 100.0
PGSC0003DMG400012647 Solanum tuberosum HOM05D006998 ORTHO05D008733 5.8e-55 217.6 134 76.9
TAR371G1002 Trochodendron aralioides HOM05D006998 ORTHO05D008733 7.6e-55 217.2 137 73.7
Solyc02g093730.4 Solanum lycopersicum HOM05D006998 ORTHO05D008733 1.0e-54 216.9 134 76.1
Actinidia18425 Actinidia chinensis HOM05D006998 ORTHO05D008733 8.4e-54 213.8 137 73.0
SGA_v2.0_scaffold135G34933 Striga asiatica HOM05D006998 ORTHO05D008733 1.1e-53 213.4 131 76.3
Sabra16G0217400 Salix brachista HOM05D006998 ORTHO05D008733 1.4e-53 213.0 137 72.3
SalBow2G2409 Salvia bowleyana HOM05D006998 ORTHO05D008733 1.4e-53 213.0 131 79.4
MSTRG.3117 Avicennia marina HOM05D006998 ORTHO05D008733 1.9e-53 212.6 130 73.8
MELO3C014841.2 Cucumis melo HOM05D006998 ORTHO05D008733 3.2e-53 211.8 137 70.8
TWI56G1021 Tripterygium wilfordii HOM05D006998 ORTHO05D008733 7.1e-53 210.7 137 72.3
Ciclev10017134m.g Citrus clementina HOM05D006998 ORTHO05D008733 1.2e-52 209.9 137 70.8
CiPaw.13G047700 Carya illinoinensis HOM05D006998 ORTHO05D008733 2.1e-52 209.1 137 73.0
Potri.001G336600 Populus trichocarpa HOM05D006998 ORTHO05D008733 2.7e-52 208.8 137 70.1
GSVIVG01003966001 Vitis vinifera HOM05D006998 ORTHO05D008733 4.6e-52 208.0 132 75.0
Atru.chr6.2476 Acer truncatum HOM05D006998 ORTHO05D008733 6.0e-52 207.6 137 70.8
COL.COLO4_29269 Corchorus olitorius HOM05D006998 ORTHO05D008733 7.9e-52 207.2 137 70.8
Sc03g0006900 Simmondsia chinensis HOM05D006998 ORTHO05D008733 1.3e-51 206.5 127 76.4
Os02g0197800 Oryza sativa ssp. japonica HOM05D006998 ORTHO05D008733 1.8e-51 206.1 136 71.3
QL02p001451 Quercus lobata HOM05D006998 ORTHO05D008733 2.3e-51 205.7 136 71.3
Lsat_1_v5_gn_4_184841 Lactuca sativa HOM05D006998 ORTHO05D008733 3.0e-51 205.3 132 73.5
Sed0003364 Sechium edule HOM05D006998 ORTHO05D008733 5.1e-51 204.5 132 69.7
vmacro18311 Vaccinium macrocarpon HOM05D006998 ORTHO05D008733 5.1e-51 204.5 146 67.8
Eucgr.I01699 Eucalyptus grandis HOM05D006998 ORTHO05D008733 6.7e-51 204.1 137 68.6
HanXRQChr09g0255661 Helianthus annuus HOM05D006998 ORTHO05D008733 6.7e-51 204.1 138 71.0
Ah.13g075640 Amaranthus hybridus HOM05D000240 ORTHO05D001153 8.7e-51 203.8 124 76.6
Manes.15G155800 Manihot esculenta HOM05D006998 ORTHO05D008733 8.7e-51 203.8 137 67.2
MBI06_g05240_MAGBIO Magnolia biondii HOM05D006998 ORTHO05D008733 1.1e-50 203.4 138 69.6
Sc03g0007000 Simmondsia chinensis HOM05D006998 ORTHO05D008733 1.9e-50 202.6 127 75.6
PSO782G5351 Papaver somniferum HOM05D006998 ORTHO05D008733 3.3e-50 201.8 131 73.3
Aqoxy1G01464 Aquilegia oxysepala HOM05D006998 ORTHO05D008733 7.4e-50 200.7 137 65.7
Cpa.g.sc130.46 Carica papaya HOM05D006998 ORTHO05D008733 9.7e-50 200.3 134 67.9
ECA232G0345 Erigeron canadensis HOM05D006998 ORTHO05D008733 1.3e-49 199.9 137 71.5
AUR62015328 Chenopodium quinoa HOM05D006998 ORTHO05D008733 2.2e-49 199.1 138 71.7
Duzib147G0953 Durio zibethinus HOM05D006998 ORTHO05D008733 2.8e-49 198.7 134 70.1
MD09G1018100 Malus domestica HOM05D006998 ORTHO05D008733 6.3e-49 197.6 137 66.4
EL10Ac3g06878 Beta vulgaris HOM05D006998 ORTHO05D008733 8.2e-49 197.2 129 72.1
Zm00001eb144320 Zea mays HOM05D006998 ORTHO05D008733 8.2e-49 197.2 137 69.3
arahy.Tifrunner.gnm1.ann1.W3WD4H Arachis hypogaea HOM05D006998 ORTHO05D008733 1.1e-48 196.8 132 72.7
Gohir.A07G225400 Gossypium hirsutum HOM05D006998 ORTHO05D008733 3.1e-48 195.3 133 69.2
Gohir.D07G232600 Gossypium hirsutum HOM05D006998 ORTHO05D008733 3.1e-48 195.3 133 68.4
Gorai.001G267900 Gossypium raimondii HOM05D006998 ORTHO05D008733 3.1e-48 195.3 133 68.4
CANSAT64G0830 Cannabis sativa HOM05D006998 ORTHO05D008733 1.2e-47 193.4 130 69.2
FAN14G5586 Fragaria x ananassa HOM05D006998 ORTHO05D008733 1.5e-47 193.0 137 66.4
Phvul.006G045900 Phaseolus vulgaris HOM05D006998 ORTHO05D008733 1.5e-47 193.0 129 72.1
Thecc.04G025300 Theobroma cacao HOM05D006998 ORTHO05D008733 1.5e-47 193.0 134 68.7
RcHm_v2.0_Chr2g0174071 Rosa chinensis HOM05D006998 ORTHO05D008733 2.0e-47 192.6 137 65.7
Medtr3g052740 Medicago truncatula HOM05D006998 ORTHO05D008733 3.4e-47 191.8 132 71.2
Migut.H00050 Erythranthe guttata HOM05D006998 ORTHO05D008733 4.5e-47 191.4 182 55.5
Glyma.08G318800 Glycine max HOM05D006998 ORTHO05D008733 2.2e-46 189.1 122 73.8
Lj6g0003593 Lotus japonicus HOM05D006998 ORTHO05D008733 3.8e-46 188.3 132 71.2
Lalb_Chr20g0116091 Lupinus albus HOM05D006998 ORTHO05D008733 3.8e-46 188.3 130 70.0
TPR.G33763 Trifolium pratense HOM05D006998 ORTHO05D008733 5.0e-46 188.0 132 70.5
CAN.G473.52 Capsicum annuum HOM05D006998 ORTHO05D008733 6.5e-46 187.6 107 80.4
Ca_14748_v3 Cicer arietinum L. HOM05D006998 ORTHO05D008733 6.5e-46 187.6 132 70.5
CDE04G0536 Ceratophyllum demersum HOM05D006998 ORTHO05D008733 8.5e-46 187.2 119 73.1
TPR.G39742 Trifolium pratense HOM05D006998 ORTHO05D008733 8.5e-46 187.2 130 70.0
arahy.Tifrunner.gnm1.ann1.24IP75 Arachis hypogaea HOM05D006998 ORTHO05D008733 1.4e-45 186.4 132 68.9
Peaxi162Scf00080g01715 Petunia axillaris HOM05D006998 ORTHO05D008733 1.9e-45 186.0 107 79.4
Nitab4.5_0005414g0020 Nicotiana tabacum HOM05D006998 ORTHO05D008733 3.2e-45 185.3 107 79.4
Nitab4.5_0000040g0550 Nicotiana tabacum HOM05D006998 ORTHO05D008733 4.2e-45 184.9 107 80.4
PSO063G6009 Papaver somniferum HOM05D006998 ORTHO05D008733 1.2e-44 183.3 174 56.3
ClCG05G013170 Citrullus lanatus HOM05D006998 ORTHO05D008733 1.6e-44 183.0 107 77.6
CsaV3_3G027380 Cucumis sativus L. HOM05D006998 ORTHO05D008733 2.1e-44 182.6 107 77.6
MBI06_g43854_MAGBIO Magnolia biondii HOM05D006998 ORTHO05D008733 2.7e-44 182.2 109 74.3
SalBow2G0885 Salvia bowleyana HOM05D006998 ORTHO05D008733 3.6e-44 181.8 107 82.2
THA.LOC104823962 Tarenaya hassleriana HOM05D006998 ORTHO05D008733 6.1e-44 181.0 122 68.9
THA.LOC104823963 Tarenaya hassleriana HOM05D006998 ORTHO05D008733 6.1e-44 181.0 122 68.9
ATR1089G022 Amborella trichopoda HOM05D006998 ORTHO05D008733 1.4e-43 179.9 126 67.5
HPP92_007225 Vanilla planifolia HOM05D006998 ORTHO05D008733 1.5e-42 176.4 128 64.1
Aa31LG2G5380 Aethionema arabicum HOM05D006998 ORTHO05D008733 2.5e-42 175.6 120 65.8
C02p54110 Brassica napus HOM05D006998 ORTHO05D008733 2.5e-42 175.6 122 67.2
BolC2t11473H Brassica oleracea HOM05D006998 ORTHO05D008733 2.5e-42 175.6 122 67.2
A02p35400 Brassica napus HOM05D006998 ORTHO05D008733 4.3e-42 174.9 122 66.4
BcaC06g31012 Brassica carinata HOM05D006998 ORTHO05D008733 5.7e-42 174.5 118 67.8
A06p41260 Brassica napus HOM05D006998 ORTHO05D008733 7.4e-42 174.1 118 66.9
BraA06t27050Z Brassica rapa HOM05D006998 ORTHO05D008733 7.4e-42 174.1 118 66.9
Carub.0005s0564 Capsella rubella HOM05D006998 ORTHO05D008733 9.7e-42 173.7 129 61.2
Sp2g16530 Schrenkiella parvula HOM05D006998 ORTHO05D008733 9.7e-42 173.7 118 67.8
CDE07G0016 Ceratophyllum demersum HOM05D006998 ORTHO05D008733 1.3e-41 173.3 106 75.5
BraA02t08541Z Brassica rapa HOM05D006998 ORTHO05D008733 1.7e-41 172.9 122 65.6
Os01g0904300 Oryza sativa ssp. japonica HOM05D006998 ORTHO05D008733 2.8e-41 172.2 107 74.8
C07p36390 Brassica napus HOM05D006998 ORTHO05D008733 4.8e-41 171.4 122 65.6
AL5G16660 Arabidopsis lyrata HOM05D006998 ORTHO05D008733 6.3e-41 171.0 118 65.3
Hund25052 Selenicereus undatus HOM05D006998 ORTHO05D008733 8.2e-41 170.6 137 63.5
BolC7t44158H Brassica oleracea HOM05D006998 ORTHO05D008733 3.1e-40 168.7 122 64.8
FAN05G2331 Fragaria x ananassa HOM05D006998 ORTHO05D008733 3.1e-40 168.7 114 68.4
arahy.Tifrunner.gnm1.ann1.5E1CRJ Arachis hypogaea HOM05D006998 ORTHO05D008733 2.0e-39 166.0 130 61.5
AagrBONN_evm.TU.Sc2ySwM_362.2114 Anthoceros agrestis HOM05D006998 ORTHO05D008733 1.3e-30 136.7 120 54.2
unitig_744.g24361 Utricularia gibba HOM05D002252 ORTHO05D002451 1.3e-30 136.7 94 68.1
SMO364G0335 Selaginella moellendorffii HOM05D006998 ORTHO05D008733 2.9e-30 135.6 103 59.2
Dinv25701 Davidia involucrata HOM05D006998 ORTHO05D008733 1.4e-29 133.3 72 81.9
DCAR_011285 Daucus carota HOM05D006998 ORTHO05D008733 1.0e-27 127.1 127 52.8
Cfa010438 Carpinus fangiana HOM05D006998 ORTHO05D008733 3.0e-27 125.6 97 64.9
VMungo0540G0081 Vigna mungo HOM05D006998 ORTHO05D008733 5.2e-27 124.8 90 66.7
Pp3c11_10230 Physcomitrium patens HOM05D006998 ORTHO05D008733 6.7e-27 124.4 104 54.8
Haze_03392 Corylus avellana HOM05D006998 ORTHO05D008733 4.4e-26 121.7 120 56.7
Haze_03396 Corylus avellana HOM05D006998 ORTHO05D008733 4.4e-26 121.7 120 56.7
COL.COLO4_29265 Corchorus olitorius HOM05D006998 ORTHO05D008733 5.7e-26 121.3 90 64.4
PGR142G0400 Punica granatum HOM05D006998 ORTHO05D008733 7.4e-26 120.9 89 64.0
Nn5g27086 Nelumbo nucifera HOM05D006998 ORTHO05D008733 9.7e-26 120.6 89 62.9
SHI03852 Sapria himalayana HOM05D006998 ORTHO05D008733 9.7e-26 120.6 95 54.7
FAN02G1980 Fragaria x ananassa HOM05D006998 ORTHO05D008733 5.3e-24 114.8 88 63.6
CBR_g38954 Chara braunii HOM05D006723 ORTHO05D008194 1.3e-22 110.2 99 49.5
AT3G27340 Arabidopsis thaliana HOM05D006998 ORTHO05D008733 5.5e-21 104.8 76 61.8
Psat5g174840 Pisum sativum HOM05D006998 ORTHO05D008733 2.7e-20 102.4 82 62.2
Thhalv10005152m.g Eutrema salsugineum HOM05D006998 ORTHO05D008733 4.7e-20 101.7 73 63.0
CARHR148660 Cardamine hirsuta HOM05D006998 ORTHO05D008733 6.1e-20 101.3 73 63.0
Dinv33390 Davidia involucrata HOM05D006998 ORTHO05D008733 2.6e-18 95.9 67 70.1
Sed0022519 Sechium edule HOM05D006998 ORTHO05D008733 5.3e-16 88.2 49 75.5
Sed0018714 Sechium edule HOM05D006998 ORTHO05D008733 1.6e-15 86.7 66 57.6
Prupe.3G299000 Prunus persica HOM05D000008 ORTHO05D000005 5.0e-14 81.6 69 55.1
Medtr1252s0010 Medicago truncatula HOM05D006998 ORTHO05D008733 4.2e-13 78.6 84 47.6
BcaB01g01217 Brassica carinata HOM05D006998 ORTHO05D008733 5.5e-13 78.2 74 55.4
FvH4_6g52430 Fragaria vesca HOM05D006998 ORTHO05D008733 7.2e-13 77.8 66 56.1
Cre09.g413300 Chlamydomonas reinhardtii HOM05D006998 ORTHO05D008733 6.8e-11 71.2 60 51.7
THA.LOC104801054 Tarenaya hassleriana HOM05D002401 ORTHO05D007109 7.5e-10 67.8 87 46.0
Mapoly0001s0548 Marchantia polymorpha HOM05D006998 ORTHO05D008733 2.7e-07 59.3 64 48.4


User provided reference genes

Program Settings