Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g00060 Coffea canephora HOM05D004782 ORTHO05D005498 9.2e-142 506.9 262 100.0
CAN.G473.32 Capsicum annuum HOM05D004782 ORTHO05D005498 1.2e-80 303.9 260 64.2
CSS0038869 Camellia sinensis var. sinensis HOM05D004782 ORTHO05D005498 1.3e-79 300.4 243 67.5
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 1.3e-79 300.4 261 63.6
Dinv25722 Davidia involucrata HOM05D004782 ORTHO05D005498 8.5e-79 297.7 254 64.2
SGA_v2.0_scaffold135G34920 Striga asiatica HOM05D004782 ORTHO05D005498 4.2e-78 295.4 263 61.6
Rhsim08G0048200 Rhododendron simsii HOM05D004782 ORTHO05D005498 2.7e-77 292.7 272 61.0
MSTRG.3133 Avicennia marina HOM05D004782 ORTHO05D005498 4.7e-77 292.0 274 62.0
Peaxi162Scf00420g00132 Petunia axillaris HOM05D004782 ORTHO05D005498 6.1e-77 291.6 264 62.1
Hma1.2p1_0818F.1_g223300 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 3.9e-76 288.9 270 63.0
Sopen02g038150 Solanum pennellii HOM05D004782 ORTHO05D005498 6.7e-76 288.1 262 61.8
Migut.H00022 Erythranthe guttata HOM05D004782 ORTHO05D005498 1.5e-75 287.0 263 62.4
Solyc02g093510.3 Solanum lycopersicum HOM05D004782 ORTHO05D005498 1.5e-75 287.0 262 61.8
Haze_14764 Corylus avellana HOM05D004782 ORTHO05D005498 9.1e-73 277.7 265 60.4
Hund13000 Selenicereus undatus HOM05D004782 ORTHO05D005498 4.5e-72 275.4 244 62.7
Actinidia18440 Actinidia chinensis HOM05D004782 ORTHO05D005498 3.2e-70 269.2 232 65.1
Sc03g0007250 Simmondsia chinensis HOM05D004782 ORTHO05D005498 2.1e-69 266.5 254 61.0
EL10Ac6g14096 Beta vulgaris HOM05D004782 ORTHO05D005498 2.7e-69 266.2 243 60.5
Sabra16G0222000 Salix brachista HOM05D004782 ORTHO05D005498 3.6e-69 265.8 250 59.6
vmacro18299 Vaccinium macrocarpon HOM05D004782 ORTHO05D005498 6.8e-68 261.5 301 52.8
HanXRQChr14g0451131 Helianthus annuus HOM05D004782 ORTHO05D005498 1.2e-67 260.8 279 56.3
Atru.chr6.2436 Acer truncatum HOM05D004782 ORTHO05D005498 1.5e-67 260.4 252 58.3
Dinv33420 Davidia involucrata HOM05D004782 ORTHO05D005498 2.0e-67 260.0 232 63.4
TWI36G0764 Tripterygium wilfordii HOM05D004782 ORTHO05D005498 4.4e-67 258.8 248 60.1
Ciclev10018402m.g Citrus clementina HOM05D004782 ORTHO05D005498 1.3e-66 257.3 257 58.8
SalBow1G0524 Salvia bowleyana HOM05D004782 ORTHO05D005498 1.3e-66 257.3 262 56.5
unitig_62.g23373 Utricularia gibba HOM05D004782 ORTHO05D005498 3.7e-66 255.8 251 55.8
Ah.02g128240 Amaranthus hybridus HOM05D004782 ORTHO05D005498 6.3e-66 255.0 248 58.5
Nn3g16678 Nelumbo nucifera HOM05D004782 ORTHO05D005498 8.3e-66 254.6 243 59.7
Prupe.3G294600 Prunus persica HOM05D004782 ORTHO05D005498 8.3e-66 254.6 255 57.6
Manes.15G152300 Manihot esculenta HOM05D004782 ORTHO05D005498 2.4e-65 253.1 246 58.9
PGSC0003DMG400012612 Solanum tuberosum HOM05D004782 ORTHO05D005498 2.4e-65 253.1 263 57.4
Lalb_Chr14g0362901 Lupinus albus HOM05D004782 ORTHO05D005498 4.1e-65 252.3 254 58.3
FvH4_6g51920 Fragaria vesca HOM05D004782 ORTHO05D005498 9.1e-65 251.1 267 57.3
Duzib147G0999 Durio zibethinus HOM05D004782 ORTHO05D005498 1.6e-64 250.4 241 58.9
MD17G1021600 Malus domestica HOM05D004782 ORTHO05D005498 2.0e-64 250.0 252 58.3
Cfa007334 Carpinus fangiana HOM05D004782 ORTHO05D005498 3.5e-64 249.2 251 56.6
FAN05G5758 Fragaria x ananassa HOM05D004782 ORTHO05D005498 1.3e-63 247.3 286 53.8
RcHm_v2.0_Chr2g0173401 Rosa chinensis HOM05D004782 ORTHO05D005498 1.3e-63 247.3 272 56.2
Potri.001G342400 Populus trichocarpa HOM05D004782 ORTHO05D005498 2.9e-63 246.1 250 56.4
FAN14G2962 Fragaria x ananassa HOM05D004782 ORTHO05D005498 5.0e-63 245.4 270 56.3
Nitab4.5_0001562g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 8.5e-63 244.6 221 62.0
TPR.G1089 Trifolium pratense HOM05D004782 ORTHO05D005498 8.5e-63 244.6 262 57.3
MD09G1021700 Malus domestica HOM05D004782 ORTHO05D005498 1.5e-62 243.8 253 56.5
Lsat_1_v5_gn_2_91141 Lactuca sativa HOM05D004782 ORTHO05D005498 1.9e-62 243.4 276 55.1
Cpa.g.sc130.76 Carica papaya HOM05D004782 ORTHO05D005498 2.5e-62 243.0 243 57.6
TAR374G0154 Trochodendron aralioides HOM05D004782 ORTHO05D005498 7.2e-62 241.5 258 54.7
DCAR_011265 Daucus carota HOM05D004782 ORTHO05D005498 3.6e-61 239.2 259 55.2
COL.COLO4_29185 Corchorus olitorius HOM05D004782 ORTHO05D005498 4.7e-61 238.8 256 55.9
AUR62028428 Chenopodium quinoa HOM05D004782 ORTHO05D005498 2.3e-60 236.5 249 55.4
ECA238G0280 Erigeron canadensis HOM05D004782 ORTHO05D005498 8.8e-60 234.6 298 49.3
Ca_07059_v3 Cicer arietinum L. HOM05D004782 ORTHO05D005498 2.0e-59 233.4 260 55.0
Glyma.16G068500 Glycine max HOM05D004782 ORTHO05D005498 2.0e-59 233.4 271 52.8
Nitab4.5_0006683g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 4.4e-59 232.3 238 57.6
FAN02G4014 Fragaria x ananassa HOM05D004782 ORTHO05D005498 7.5e-59 231.5 274 55.5
Phvul.008G228200 Phaseolus vulgaris HOM05D004782 ORTHO05D005498 3.7e-58 229.2 286 51.0
QL02p073881 Quercus lobata HOM05D004782 ORTHO05D005498 4.8e-58 228.8 274 51.5
Psat5g038480 Pisum sativum HOM05D004782 ORTHO05D005498 6.3e-58 228.4 263 53.2
CANSAT01G0425 Cannabis sativa HOM05D004782 ORTHO05D005498 8.3e-58 228.0 265 51.7
ClCG10G013750 Citrullus lanatus HOM05D004782 ORTHO05D005498 8.3e-58 228.0 252 55.2
Medtr7g033120 Medicago truncatula HOM05D004782 ORTHO05D005498 8.3e-58 228.0 263 54.4
CsaV3_3G042920 Cucumis sativus L. HOM05D004782 ORTHO05D005498 2.4e-57 226.5 261 53.3
PSO017G6962 Papaver somniferum HOM05D004782 ORTHO05D005498 2.4e-57 226.5 266 51.5
Lj1g0001798 Lotus japonicus HOM05D004782 ORTHO05D005498 4.1e-57 225.7 249 53.0
MELO3C026593.2 Cucumis melo HOM05D004782 ORTHO05D005498 7.0e-57 224.9 259 53.3
Gohir.D10G085900 Gossypium hirsutum HOM05D004782 ORTHO05D005498 7.0e-57 224.9 241 53.5
Gorai.011G094100 Gossypium raimondii HOM05D004782 ORTHO05D005498 7.0e-57 224.9 241 53.5
Thecc.04G020400 Theobroma cacao HOM05D004782 ORTHO05D005498 7.0e-57 224.9 241 54.8
Glyma.16G018100 Glycine max HOM05D004782 ORTHO05D005498 9.1e-57 224.6 272 50.7
VMungo0647G2046 Vigna mungo HOM05D004782 ORTHO05D005498 9.1e-57 224.6 275 50.5
Aqoxy3G01250 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 2.7e-56 223.0 262 50.8
Gohir.A10G101700 Gossypium hirsutum HOM05D004782 ORTHO05D005498 5.9e-56 221.9 242 53.7
PSO478G2740 Papaver somniferum HOM05D004782 ORTHO05D005498 1.3e-55 220.7 262 51.5
CiPaw.03G046200 Carya illinoinensis HOM05D004782 ORTHO05D005498 1.1e-54 217.6 227 54.2
DCAR_021737 Daucus carota HOM05D004782 ORTHO05D005498 2.5e-54 216.5 255 52.5
CiPaw.04G029900 Carya illinoinensis HOM05D004782 ORTHO05D005498 1.6e-53 213.8 211 56.9
Eucgr.I01726 Eucalyptus grandis HOM05D004782 ORTHO05D005498 2.8e-53 213.0 260 50.0
Hma1.2p1_1747F.1_g300620 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 6.1e-53 211.8 255 54.1
ATR0122G021 Amborella trichopoda HOM05D004782 ORTHO05D005498 1.0e-52 211.1 260 49.6
PSO339G5508 Papaver somniferum HOM05D004782 ORTHO05D005498 1.8e-52 210.3 249 50.6
PGR142G1749 Punica granatum HOM05D004782 ORTHO05D005498 1.8e-52 210.3 265 52.1
CDE09G1218 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 6.3e-50 201.8 256 47.7
MBI06_g10164_MAGBIO Magnolia biondii HOM05D004782 ORTHO05D005498 8.3e-50 201.4 269 47.6
Sed0010446 Sechium edule HOM05D004782 ORTHO05D005498 4.1e-49 199.1 295 44.4
Lju41A44T82 Lonicera japonica HOM05D004782 ORTHO05D005498 5.4e-49 198.7 234 53.0
AT5G40570 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 7.8e-48 194.9 243 48.1
GSVIVG01032375001 Vitis vinifera HOM05D004782 ORTHO05D005498 8.6e-47 191.4 216 53.7
THA.LOC104802393 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 1.1e-46 191.0 259 46.3
Aa31LG11G15220 Aethionema arabicum HOM05D004782 ORTHO05D005498 1.5e-46 190.7 253 48.2
CDE02G1226 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 1.9e-46 190.3 252 46.4
A03p06620 Brassica napus HOM05D004782 ORTHO05D005498 3.3e-46 189.5 217 49.3
BraA03t09994Z Brassica rapa HOM05D004782 ORTHO05D005498 3.3e-46 189.5 217 49.3
BcaNung03155 Brassica carinata HOM05D004782 ORTHO05D005498 4.3e-46 189.1 234 49.1
CARHR261410 Cardamine hirsuta HOM05D004782 ORTHO05D005498 5.6e-46 188.7 247 47.0
BcaB01g06372 Brassica carinata HOM05D004782 ORTHO05D005498 1.6e-45 187.2 221 48.4
C02p06750 Brassica napus HOM05D004782 ORTHO05D005498 1.6e-45 187.2 232 49.1
BraA02t05220Z Brassica rapa HOM05D004782 ORTHO05D005498 1.6e-45 187.2 231 48.5
Os04g0480400 Oryza sativa ssp. japonica HOM05D004782 ORTHO05D005498 2.8e-45 186.4 250 45.2
C03p07650 Brassica napus HOM05D004782 ORTHO05D005498 3.6e-45 186.0 220 48.2
THA.LOC104805360 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 8.0e-45 184.9 241 46.9
Sp6g29580 Schrenkiella parvula HOM05D004782 ORTHO05D005498 1.0e-44 184.5 237 48.9
CARHR198870 Cardamine hirsuta HOM05D004782 ORTHO05D005498 1.4e-44 184.1 278 43.2
BcaB02g07942 Brassica carinata HOM05D004782 ORTHO05D005498 1.8e-44 183.7 241 46.1
Carub.0007s3495 Capsella rubella HOM05D004782 ORTHO05D005498 1.8e-44 183.7 243 46.9
Sp7g01290 Schrenkiella parvula HOM05D004782 ORTHO05D005498 2.3e-44 183.3 241 47.3
BcaC03g13490 Brassica carinata HOM05D004782 ORTHO05D005498 4.0e-44 182.6 272 44.9
BolC2t06621H Brassica oleracea HOM05D004782 ORTHO05D005498 4.0e-44 182.6 230 49.1
BolC3t13265H Brassica oleracea HOM05D004782 ORTHO05D005498 4.0e-44 182.6 219 47.9
AL6G25170 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 1.2e-43 181.0 235 48.1
AL7G49230 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 1.2e-43 181.0 249 45.4
Thhalv10014310m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 3.4e-43 179.5 225 48.0
PGR083G1527 Punica granatum HOM05D004782 ORTHO05D005498 3.4e-43 179.5 246 46.3
Hma1.2p1_1563F.1_g290780 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 5.8e-43 178.7 101 81.2
A02p02500 Brassica napus HOM05D004782 ORTHO05D005498 1.3e-42 177.6 237 47.3
AT5G14440 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 6.4e-42 175.3 232 47.4
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 1.4e-41 174.1 235 45.5
BcaC08g44464 Brassica carinata HOM05D004782 ORTHO05D005498 1.4e-41 174.1 243 46.5
Zm00001eb424970 Zea mays HOM05D004782 ORTHO05D005498 3.2e-41 172.9 251 44.6
Thhalv10027935m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 7.0e-41 171.8 247 45.3
FAN09G1186 Fragaria x ananassa HOM05D004782 ORTHO05D005498 1.6e-40 170.6 112 71.4
Actinidia33328 Actinidia chinensis HOM05D004782 ORTHO05D005498 2.7e-40 169.9 121 68.6
Carub.0006s1262 Capsella rubella HOM05D004782 ORTHO05D005498 2.7e-40 169.9 230 46.5
SEGI_27694 Sequoiadendron giganteum HOM05D004782 ORTHO05D005498 7.8e-40 168.3 255 44.3
BolC6t37113H Brassica oleracea HOM05D000001 ORTHO05D000003 5.0e-39 165.6 266 43.2
BcaC03g13488 Brassica carinata HOM05D004782 ORTHO05D005498 2.1e-37 160.2 139 56.1
BcaC03g13487 Brassica carinata HOM05D000631 ORTHO05D005498 2.8e-37 159.8 108 66.7
BcaC01g01812 Brassica carinata HOM05D004782 ORTHO05D005498 4.4e-35 152.5 226 41.2
arahy.Tifrunner.gnm1.ann1.6S1J49 Arachis hypogaea HOM05D004782 ORTHO05D005498 7.5e-35 151.8 253 43.9
BcaNung03158 Brassica carinata HOM05D004782 ORTHO05D005498 9.8e-35 151.4 254 40.9
arahy.Tifrunner.gnm1.ann1.65GF4N Arachis hypogaea HOM05D004782 ORTHO05D005498 1.3e-34 151.0 253 44.3
C09p40620 Brassica napus HOM05D004782 ORTHO05D005498 1.2e-32 144.4 252 38.5
C08p04380 Brassica napus HOM05D004782 ORTHO05D005498 1.7e-31 140.6 143 53.8
BolC7t41458H Brassica oleracea HOM05D004782 ORTHO05D005498 5.6e-30 135.6 113 58.4
BolC9t56944H Brassica oleracea HOM05D004782 ORTHO05D005498 4.7e-29 132.5 272 35.7
BcaC04g20684 Brassica carinata HOM05D004782 ORTHO05D005498 1.1e-28 131.3 224 38.8
BcaC01g01740 Brassica carinata HOM05D004782 ORTHO05D005498 5.2e-28 129.0 165 44.8
Cc07_g20220 Coffea canephora HOM05D001715 ORTHO05D004824 1.2e-27 127.9 89 79.8
BolC3t19536H Brassica oleracea HOM05D004782 ORTHO05D005498 1.5e-27 127.5 150 47.3
AagrBONN_evm.TU.Sc2ySwM_368.1010 Anthoceros agrestis HOM05D004782 ORTHO05D005498 2.0e-27 127.1 277 31.8
HPP92_008082 Vanilla planifolia HOM05D004782 ORTHO05D005498 2.0e-27 127.1 247 36.4
Mapoly0013s0192 Marchantia polymorpha HOM05D004782 ORTHO05D005498 3.4e-27 126.3 275 35.3
BcaC07g37075 Brassica carinata HOM05D004782 ORTHO05D005498 3.2e-25 119.8 149 46.3
C07p10120 Brassica napus HOM05D000186 ORTHO05D005498 3.5e-24 116.3 104 56.7
C03p72400 Brassica napus HOM05D000186 ORTHO05D005498 1.1e-22 111.3 140 46.4
BolC8t47241H Brassica oleracea HOM05D004782 ORTHO05D005498 1.5e-22 110.9 161 43.5
BcaC05g29299 Brassica carinata HOM05D004782 ORTHO05D014986 4.3e-22 109.4 154 40.3
Sabra15G0083700 Salix brachista HOM05D004782 ORTHO05D005498 4.3e-22 109.4 76 65.8
C05p55830 Brassica napus HOM05D004782 ORTHO05D005498 8.1e-21 105.1 156 39.7
Lj7A601G104 Lonicera japonica HOM05D004782 ORTHO05D005498 1.8e-20 104.0 173 42.8
SMO119G0179 Selaginella moellendorffii HOM05D004782 ORTHO05D005498 1.8e-20 104.0 292 29.8
Gohir.A04G046350 Gossypium hirsutum HOM05D004782 ORTHO05D005498 8.9e-20 101.7 85 58.8
BolC5t34251H Brassica oleracea HOM05D004782 ORTHO05D005498 4.2e-17 92.8 156 37.2
CDE06G1742 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 1.8e-12 77.4 115 41.7
CBR_g2746 Chara braunii HOM05D001539 ORTHO05D000937 1.9e-09 67.4 339 24.8
MD10G1172000 Malus domestica HOM05D004782 ORTHO05D005498 2.4e-09 67.0 73 57.5
Actinidia35780 Actinidia chinensis HOM05D004782 ORTHO05D005498 1.7e-07 60.8 41 75.6
Aqoxy3G01251 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 5.1e-07 59.3 79 41.8


User provided reference genes

Program Settings