Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g23720 Coffea canephora HOM05D002227 ORTHO05D002337 2.8e-82 308.5 155 100.0
Cc01_g14570 Coffea canephora HOM05D002227 ORTHO05D002337 1.3e-15 87.0 74 60.8
Dinv28670 Davidia involucrata HOM05D002227 ORTHO05D002337 4.8e-13 78.6 74 54.1
Os01g0832000 Oryza sativa ssp. japonica HOM05D002227 ORTHO05D002337 1.1e-12 77.4 74 54.1
Hma1.2p1_3020F.1_g331753 Hydrangea macrophylla HOM05D002227 ORTHO05D002337 1.4e-12 77.0 74 52.7
Hma1.2p1_1974F.1_g309650 Hydrangea macrophylla HOM05D002227 ORTHO05D002337 1.8e-12 76.6 73 52.1
Lj1A130T36 Lonicera japonica HOM05D002227 ORTHO05D002337 3.1e-12 75.9 69 56.5
Zm00001eb368390 Zea mays HOM05D002227 ORTHO05D002337 3.1e-12 75.9 74 54.1
Hma1.2p1_1974F.1_g309640 Hydrangea macrophylla HOM05D002227 ORTHO05D002337 4.1e-12 75.5 70 52.9
Hma1.2p1_3020F.1_g331756 Hydrangea macrophylla HOM05D002227 ORTHO05D002337 4.1e-12 75.5 70 52.9
Lj6g0022428 Lotus japonicus HOM05D002227 ORTHO05D002337 4.1e-12 75.5 68 58.8
Actinidia32625 Actinidia chinensis HOM05D002227 ORTHO05D002337 1.5e-11 73.6 74 48.6
vmacro02941 Vaccinium macrocarpon HOM05D002227 ORTHO05D002337 1.5e-11 73.6 74 52.7
CSS0030758 Camellia sinensis var. sinensis HOM05D002227 ORTHO05D002337 3.4e-11 72.4 74 52.7
Eucgr.I00620 Eucalyptus grandis HOM05D002227 ORTHO05D002337 4.5e-11 72.0 68 52.9
Medtr3g465120 Medicago truncatula HOM05D002227 ORTHO05D002337 4.5e-11 72.0 68 57.4
Medtr4g016040 Medicago truncatula HOM05D002227 ORTHO05D002337 4.5e-11 72.0 68 57.4
Rhsim13G0066600 Rhododendron simsii HOM05D002227 ORTHO05D002337 5.9e-11 71.6 74 51.4
Lsat_1_v5_gn_9_18760 Lactuca sativa HOM05D002227 ORTHO05D002337 1.0e-10 70.9 74 50.0
AUR62037176 Chenopodium quinoa HOM05D002227 ORTHO05D002337 1.3e-10 70.5 74 47.3
ECA247G1611 Erigeron canadensis HOM05D002227 ORTHO05D002337 1.3e-10 70.5 74 45.9
Eucgr.H00292 Eucalyptus grandis HOM05D002227 ORTHO05D002337 1.3e-10 70.5 68 52.9
AUR62025124 Chenopodium quinoa HOM05D002227 ORTHO05D002337 1.7e-10 70.1 74 47.3
HanXRQChr04g0103701 Helianthus annuus HOM05D002227 ORTHO05D002337 1.7e-10 70.1 74 48.6
A10p15710 Brassica napus HOM05D002227 ORTHO05D002337 2.9e-10 69.3 70 51.4
Psat5g154840 Pisum sativum HOM05D002227 ORTHO05D002337 2.9e-10 69.3 68 57.4
Prupe.6G052700 Prunus persica HOM05D002227 ORTHO05D002337 3.8e-10 68.9 68 52.9
MSTRG.3075 Avicennia marina HOM05D002227 ORTHO05D002337 5.0e-10 68.6 151 32.5
Cfa011738 Carpinus fangiana HOM05D002227 ORTHO05D002337 5.0e-10 68.6 66 56.1
FvH4_3g39170 Fragaria vesca HOM05D002227 ORTHO05D002337 5.0e-10 68.6 68 52.9
FAN11G1803 Fragaria x ananassa HOM05D002227 ORTHO05D002337 5.0e-10 68.6 68 52.9
FAN16G2489 Fragaria x ananassa HOM05D002227 ORTHO05D002337 5.0e-10 68.6 68 52.9
FAN21G0801 Fragaria x ananassa HOM05D002227 ORTHO05D002337 5.0e-10 68.6 68 52.9
Medtr4g015990 Medicago truncatula HOM05D002227 ORTHO05D002337 5.0e-10 68.6 68 55.9
Ca_14978_v3 Cicer arietinum L. HOM05D002227 ORTHO05D002337 6.5e-10 68.2 64 59.4
Ciclev10028969m.g Citrus clementina HOM05D002227 ORTHO05D002337 6.5e-10 68.2 68 51.5
DCAR_018948 Daucus carota HOM05D002227 ORTHO05D002337 6.5e-10 68.2 74 48.6
FAN25G3050 Fragaria x ananassa HOM05D002227 ORTHO05D002337 6.5e-10 68.2 68 51.5
Oeu058789.3 Olea europaea HOM05D002227 ORTHO05D002337 6.5e-10 68.2 74 51.4
Lsat_1_v5_gn_8_110781 Lactuca sativa HOM05D002227 ORTHO05D002337 8.5e-10 67.8 87 43.7
Oeu011965.1 Olea europaea HOM05D002227 ORTHO05D002337 8.5e-10 67.8 70 52.9
MELO3C020525.2 Cucumis melo HOM05D002227 ORTHO05D002337 1.1e-09 67.4 68 55.9
DCAR_015646 Daucus carota HOM05D002227 ORTHO05D002337 1.1e-09 67.4 70 47.1
Eucgr.I00622 Eucalyptus grandis HOM05D002227 ORTHO05D002337 1.1e-09 67.4 68 50.0
Glyma.18G059900 Glycine max HOM05D002227 ORTHO05D002337 1.1e-09 67.4 70 51.4
MD11G1066300 Malus domestica HOM05D002227 ORTHO05D002337 1.1e-09 67.4 68 52.9
RcHm_v2.0_Chr5g0070611 Rosa chinensis HOM05D002227 ORTHO05D002337 1.1e-09 67.4 68 52.9
TPR.G32895 Trifolium pratense HOM05D002227 ORTHO05D002337 1.1e-09 67.4 65 55.4
Lalb_Chr18g0051201 Lupinus albus HOM05D002227 ORTHO05D002337 1.4e-09 67.0 68 55.9
Nitab4.5_0000719g0090 Nicotiana tabacum HOM05D002227 ORTHO05D002337 1.4e-09 67.0 70 51.4
Phvul.006G071000 Phaseolus vulgaris HOM05D002227 ORTHO05D002337 1.4e-09 67.0 68 52.9
Hund08125 Selenicereus undatus HOM05D002227 ORTHO05D002337 1.4e-09 67.0 68 50.0
EL10Ac9g22394 Beta vulgaris HOM05D002227 ORTHO05D002337 1.9e-09 66.6 74 45.9
Ca_14977_v3 Cicer arietinum L. HOM05D002227 ORTHO05D002337 1.9e-09 66.6 64 57.8
Haze_24346 Corylus avellana HOM05D002227 ORTHO05D002337 1.9e-09 66.6 66 53.0
Lj2A1088T45 Lonicera japonica HOM05D002227 ORTHO05D002337 1.9e-09 66.6 70 47.1
Nitab4.5_0011946g0010 Nicotiana tabacum HOM05D002227 ORTHO05D002337 1.9e-09 66.6 64 56.2
TAR623G0155 Trochodendron aralioides HOM05D002227 ORTHO05D002337 1.9e-09 66.6 74 50.0
Aqoxy4G02438 Aquilegia oxysepala HOM05D002227 ORTHO05D002337 2.5e-09 66.2 74 50.0
Duzib168G2254 Durio zibethinus HOM05D002227 ORTHO05D002337 2.5e-09 66.2 68 52.9
Thecc.09G353400 Theobroma cacao HOM05D002227 ORTHO05D002337 2.5e-09 66.2 68 52.9
HPP92_026976 Vanilla planifolia HOM05D002227 ORTHO05D002337 2.5e-09 66.2 69 50.7
VMungo0540G0758 Vigna mungo HOM05D002227 ORTHO05D002337 2.5e-09 66.2 68 55.9
arahy.Tifrunner.gnm1.ann1.74840C Arachis hypogaea HOM05D002227 ORTHO05D002337 3.2e-09 65.9 74 51.4
C09p50550 Brassica napus HOM05D002227 ORTHO05D002337 3.2e-09 65.9 70 45.7
BolC9t57911H Brassica oleracea HOM05D002227 ORTHO05D002337 3.2e-09 65.9 70 45.7
BraA10t43662Z Brassica rapa HOM05D002227 ORTHO05D002337 3.2e-09 65.9 70 48.6
CsaV3_1G036440 Cucumis sativus L. HOM05D002227 ORTHO05D002337 3.2e-09 65.9 68 54.4
MD03G1062900 Malus domestica HOM05D002227 ORTHO05D002337 3.2e-09 65.9 68 52.9
Sed0020496 Sechium edule HOM05D002227 ORTHO05D002337 3.2e-09 65.9 68 52.9
THA.LOC104799389 Tarenaya hassleriana HOM05D002227 ORTHO05D002337 3.2e-09 65.9 74 50.0
HPP92_015420 Vanilla planifolia HOM05D002227 ORTHO05D002337 3.2e-09 65.9 69 50.7
ATR0174G056 Amborella trichopoda HOM05D002227 ORTHO05D002337 4.2e-09 65.5 69 49.3
arahy.Tifrunner.gnm1.ann1.H210YC Arachis hypogaea HOM05D002227 ORTHO05D002337 4.2e-09 65.5 74 52.7
Migut.F00061 Erythranthe guttata HOM05D002227 ORTHO05D002337 5.5e-09 65.1 68 55.9
Gorai.013G270100 Gossypium raimondii HOM05D002227 ORTHO05D002337 5.5e-09 65.1 69 52.2
arahy.Tifrunner.gnm1.ann1.J3DU87 Arachis hypogaea HOM05D002227 ORTHO05D002337 7.2e-09 64.7 59 62.7
Ca_27521_v3 Cicer arietinum L. HOM05D002227 ORTHO05D002337 7.2e-09 64.7 64 57.8
Nn2g13209 Nelumbo nucifera HOM05D002227 ORTHO05D002337 7.2e-09 64.7 66 51.5
TAR633G1549 Trochodendron aralioides HOM05D002227 ORTHO05D002337 7.2e-09 64.7 59 57.6
Atru.chr1.2592 Acer truncatum HOM05D002227 ORTHO05D002337 9.4e-09 64.3 155 32.3
ClCG03G000480 Citrullus lanatus HOM05D002227 ORTHO05D002337 9.4e-09 64.3 74 48.6
COL.COLO4_11077 Corchorus olitorius HOM05D002227 ORTHO05D002337 9.4e-09 64.3 68 50.0
Gohir.D13G239200 Gossypium hirsutum HOM05D002227 ORTHO05D002337 9.4e-09 64.3 69 52.2
TAR369G0665 Trochodendron aralioides HOM05D002227 ORTHO05D002337 9.4e-09 64.3 74 48.6
unitig_748.g7072 Utricularia gibba HOM05D002227 ORTHO05D002337 9.4e-09 64.3 70 51.4
Cpa.g.sc2.416 Carica papaya HOM05D002227 ORTHO05D002337 1.6e-08 63.5 74 45.9
CiPaw.13G073500 Carya illinoinensis HOM05D002227 ORTHO05D002337 1.6e-08 63.5 68 52.9
Nitab4.5_0016044g0010 Nicotiana tabacum HOM05D002227 ORTHO05D002337 1.6e-08 63.5 70 50.0
CANSAT54G1870 Cannabis sativa HOM05D002227 ORTHO05D002337 2.1e-08 63.2 68 51.5
A03p12140 Brassica napus HOM05D002227 ORTHO05D002337 2.7e-08 62.8 70 48.6
CARHR272390 Cardamine hirsuta HOM05D002227 ORTHO05D002337 2.7e-08 62.8 68 48.5
COL.COLO4_11083 Corchorus olitorius HOM05D002227 ORTHO05D002337 2.7e-08 62.8 68 48.5
Gohir.A13G233600 Gossypium hirsutum HOM05D002227 ORTHO05D002337 2.7e-08 62.8 69 50.7
Gohir.D03G140600 Gossypium hirsutum HOM05D002227 ORTHO05D002337 2.7e-08 62.8 68 48.5
Gorai.003G147500 Gossypium raimondii HOM05D002227 ORTHO05D002337 2.7e-08 62.8 68 48.5
MBI15_g20454_MAGBIO Magnolia biondii HOM05D002227 ORTHO05D002337 2.7e-08 62.8 59 55.9
Peaxi162Scf01410g00004 Petunia axillaris HOM05D002227 ORTHO05D002337 2.7e-08 62.8 64 53.1
GSVIVG01024690001 Vitis vinifera HOM05D002227 ORTHO05D002337 2.7e-08 62.8 72 45.8
BcaB08g36191 Brassica carinata HOM05D002227 ORTHO05D002337 3.6e-08 62.4 70 47.1
Duzib170G1106 Durio zibethinus HOM05D002227 ORTHO05D002337 3.6e-08 62.4 68 51.5
Gohir.A03G027900 Gossypium hirsutum HOM05D002227 ORTHO05D002337 3.6e-08 62.4 68 48.5
Sc21g0000190 Simmondsia chinensis HOM05D002227 ORTHO05D002337 3.6e-08 62.4 74 44.6
A03p12130 Brassica napus HOM05D002227 ORTHO05D002337 4.6e-08 62.0 70 47.1
C03p14230 Brassica napus HOM05D002227 ORTHO05D002337 4.6e-08 62.0 70 51.4
BraA03t10526Z Brassica rapa HOM05D002227 ORTHO05D002337 4.6e-08 62.0 70 51.4
Potri.009G074700 Populus trichocarpa HOM05D002227 ORTHO05D002337 4.6e-08 62.0 69 46.4
Potri.009G074800 Populus trichocarpa HOM05D002227 ORTHO05D002337 4.6e-08 62.0 69 46.4
QL01p039366 Quercus lobata HOM05D002227 ORTHO05D002337 4.6e-08 62.0 73 45.2
Os11g0105800 Oryza sativa ssp. japonica HOM05D002227 ORTHO05D002337 6.1e-08 61.6 73 45.2
GSVIVG01024688001 Vitis vinifera HOM05D002227 ORTHO05D002337 6.1e-08 61.6 72 44.4
Carub.0008s1916 Capsella rubella HOM05D002227 ORTHO05D002337 7.9e-08 61.2 68 47.1
HanXRQChr10g0289371 Helianthus annuus HOM05D002227 ORTHO05D002337 1.0e-07 60.8 87 40.2
Lsat_1_v5_gn_8_111160 Lactuca sativa HOM05D002227 ORTHO05D002337 1.0e-07 60.8 73 42.5
Sabra09G0056700 Salix brachista HOM05D002227 ORTHO05D002337 1.0e-07 60.8 78 41.0
SalBow4G2230 Salvia bowleyana HOM05D002227 ORTHO05D002337 1.0e-07 60.8 68 47.1
SalBow4G2979 Salvia bowleyana HOM05D002227 ORTHO05D002337 1.0e-07 60.8 68 47.1
BcaC01g06636 Brassica carinata HOM05D002227 ORTHO05D002337 1.4e-07 60.5 60 50.0
CAN.G2536.1 Capsicum annuum HOM05D002227 ORTHO05D002337 1.8e-07 60.1 70 44.3
CAN.G3.21 Capsicum annuum HOM05D002227 ORTHO05D002337 1.8e-07 60.1 70 44.3
Os12g0105500 Oryza sativa ssp. japonica HOM05D002227 ORTHO05D002337 1.8e-07 60.1 73 43.8
SalBow4G1701 Salvia bowleyana HOM05D002227 ORTHO05D002337 1.8e-07 60.1 68 48.5
Aa31LG11G320 Aethionema arabicum HOM05D002227 ORTHO05D002337 2.3e-07 59.7 74 41.9
CDE06G1232 Ceratophyllum demersum HOM05D002227 ORTHO05D002337 2.3e-07 59.7 69 47.8
Dinv09649 Davidia involucrata HOM05D002227 ORTHO05D002337 2.3e-07 59.7 65 49.2
HanXRQChr05g0130451 Helianthus annuus HOM05D002227 ORTHO05D002337 2.3e-07 59.7 73 42.5
Nitab4.5_0000050g0040 Nicotiana tabacum HOM05D002227 ORTHO05D002337 2.3e-07 59.7 71 49.3
Potri.001G279900 Populus trichocarpa HOM05D002227 ORTHO05D002337 2.3e-07 59.7 69 47.8
Sabra16G0173500 Salix brachista HOM05D002227 ORTHO05D002337 2.3e-07 59.7 59 49.2
SGA_v2.0_scaffold44G16914 Striga asiatica HOM05D002227 ORTHO05D002337 2.3e-07 59.7 68 51.5
C03p14220 Brassica napus HOM05D002227 ORTHO05D002337 3.0e-07 59.3 70 45.7
BraA03t10525Z Brassica rapa HOM05D002227 ORTHO05D002337 3.0e-07 59.3 70 45.7
THA.LOC104799865 Tarenaya hassleriana HOM05D002227 ORTHO05D002337 3.9e-07 58.9 59 49.2
AL8G34800 Arabidopsis lyrata HOM05D002227 ORTHO05D002337 5.1e-07 58.5 68 47.1
BolC3t13868H Brassica oleracea HOM05D002227 ORTHO05D002337 5.1e-07 58.5 60 50.0
ECA236G0265 Erigeron canadensis HOM05D002227 ORTHO05D002337 5.1e-07 58.5 154 29.2
PSO170G3694 Papaver somniferum HOM05D002227 ORTHO05D002337 5.1e-07 58.5 84 40.5
BcaB01g04506 Brassica carinata HOM05D002227 ORTHO05D002337 6.7e-07 58.2 70 45.7
Thhalv10014180m.g Eutrema salsugineum HOM05D002227 ORTHO05D002337 1.1e-06 57.4 70 45.7
PSO017G6504 Papaver somniferum HOM05D002227 ORTHO05D002337 1.5e-06 57.0 84 41.7
Sp6g20250 Schrenkiella parvula HOM05D002227 ORTHO05D002337 2.0e-06 56.6 70 45.7
AT5G58560 Arabidopsis thaliana HOM05D002227 ORTHO05D002337 2.5e-06 56.2 59 47.5
CDE04G3683 Ceratophyllum demersum HOM05D002227 ORTHO05D002337 2.5e-06 56.2 58 50.0
Solyc09g018510.3 Solanum lycopersicum HOM05D002227 ORTHO05D002337 2.5e-06 56.2 70 42.9
Sopen09g011790 Solanum pennellii HOM05D002227 ORTHO05D002337 2.5e-06 56.2 70 42.9
Oeu058788.1 Olea europaea HOM05D002227 ORTHO05D002337 3.3e-06 55.8 70 47.1


User provided reference genes

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