Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g23350 Coffea canephora HOM05D004880 ORTHO05D006130 2.2e-230 802.0 408 100.0
Nitab4.5_0005082g0030 Nicotiana tabacum HOM05D004880 ORTHO05D006130 3.5e-180 635.2 408 77.0
Dinv24034 Davidia involucrata HOM05D004880 ORTHO05D006130 3.0e-179 632.1 409 76.3
Nitab4.5_0002532g0010 Nicotiana tabacum HOM05D004880 ORTHO05D006130 7.5e-175 617.5 408 75.2
Actinidia22070 Actinidia chinensis HOM05D004880 ORTHO05D006130 9.9e-175 617.1 408 76.0
Rhsim03G0002700 Rhododendron simsii HOM05D004880 ORTHO05D006130 4.9e-174 614.8 408 74.3
RcHm_v2.0_Chr3g0478791 Rosa chinensis HOM05D004880 ORTHO05D006130 4.9e-174 614.8 408 72.3
PGSC0003DMG400001105 Solanum tuberosum HOM05D004880 ORTHO05D006130 4.9e-174 614.8 408 73.8
CAN.G8.1 Capsicum annuum HOM05D004880 ORTHO05D006130 1.4e-173 613.2 410 74.6
GSVIVG01033434001 Vitis vinifera HOM05D004880 ORTHO05D006130 1.4e-173 613.2 408 73.5
Haze_20052 Corylus avellana HOM05D004880 ORTHO05D006130 2.4e-173 612.5 408 73.8
RhsimUnG0014100 Rhododendron simsii HOM05D004880 ORTHO05D006130 2.4e-173 612.5 408 74.0
Haze_20059 Corylus avellana HOM05D004880 ORTHO05D006130 7.1e-173 610.9 408 73.5
Manes.08G040500 Manihot esculenta HOM05D004880 ORTHO05D006130 7.1e-173 610.9 409 72.6
MSTRG.26074 Avicennia marina HOM05D004880 ORTHO05D006130 2.1e-172 609.4 408 73.8
Solyc03g051970.3 Solanum lycopersicum HOM05D004880 ORTHO05D006130 2.7e-172 609.0 408 73.3
Sopen03g011420 Solanum pennellii HOM05D004880 ORTHO05D006130 7.8e-172 607.4 408 73.0
Sabra16G0064000 Salix brachista HOM05D004880 ORTHO05D006130 3.0e-171 605.5 408 72.3
Migut.J01871 Erythranthe guttata HOM05D004880 ORTHO05D006130 1.5e-170 603.2 408 73.0
CANSAT64G2835 Cannabis sativa HOM05D004880 ORTHO05D006130 2.5e-170 602.4 411 72.0
Actinidia38600 Actinidia chinensis HOM05D004880 ORTHO05D006130 4.3e-170 601.7 408 73.5
Oeu063855.2 Olea europaea HOM05D004880 ORTHO05D006130 4.3e-170 601.7 439 70.4
Atru.chr8.1200 Acer truncatum HOM05D004880 ORTHO05D006130 7.3e-170 600.9 410 71.5
MD14G1051200 Malus domestica HOM05D004880 ORTHO05D006130 1.6e-169 599.7 408 71.3
Prupe.7G084800 Prunus persica HOM05D004880 ORTHO05D006130 2.1e-169 599.4 408 71.3
Duzib093G1906 Durio zibethinus HOM05D004880 ORTHO05D006130 3.6e-169 598.6 408 72.3
FvH4_6g21550 Fragaria vesca HOM05D004880 ORTHO05D006130 3.6e-169 598.6 408 71.3
FAN14G3637 Fragaria x ananassa HOM05D004880 ORTHO05D006130 3.6e-169 598.6 408 71.3
Potri.016G062100 Populus trichocarpa HOM05D004880 ORTHO05D006130 3.6e-169 598.6 408 72.1
Eucgr.K01870 Eucalyptus grandis HOM05D004880 ORTHO05D006130 6.2e-169 597.8 408 71.3
Potri.006G196200 Populus trichocarpa HOM05D004880 ORTHO05D006130 6.2e-169 597.8 408 72.5
MD12G1052800 Malus domestica HOM05D004880 ORTHO05D006130 1.1e-168 597.0 408 71.6
CiPaw.09G027000 Carya illinoinensis HOM05D004880 ORTHO05D006130 1.8e-168 596.3 408 71.8
QL07p025081 Quercus lobata HOM05D004880 ORTHO05D006130 3.1e-168 595.5 407 72.2
QL07p025096 Quercus lobata HOM05D004880 ORTHO05D006130 3.1e-168 595.5 407 72.2
TWI74G0273 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 5.2e-168 594.7 408 69.9
SalBow1G7250 Salvia bowleyana HOM05D004880 ORTHO05D006130 8.9e-168 594.0 402 74.1
TWI77G0767 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 1.2e-167 593.6 408 70.1
Nn7g35913 Nelumbo nucifera HOM05D004880 ORTHO05D006130 5.8e-167 591.3 408 70.1
QL10p026397 Quercus lobata HOM05D004880 ORTHO05D006130 5.8e-167 591.3 407 71.3
Duzib128G0581 Durio zibethinus HOM05D004880 ORTHO05D006130 9.9e-167 590.5 408 72.1
Thecc.05G178700 Theobroma cacao HOM05D004880 ORTHO05D006130 9.9e-167 590.5 408 72.3
Sabra06G0150800 Salix brachista HOM05D004880 ORTHO05D006130 1.3e-166 590.1 408 71.1
Gorai.006G144600 Gossypium raimondii HOM05D004880 ORTHO05D006130 1.7e-166 589.7 408 71.3
Aqoxy2G00483 Aquilegia oxysepala HOM05D004880 ORTHO05D006130 3.8e-166 588.6 408 69.6
Gohir.D09G125600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 3.8e-166 588.6 408 71.3
Gohir.A09G129600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 4.9e-166 588.2 408 71.1
Lj1A1134T63 Lonicera japonica HOM05D004880 ORTHO05D006130 8.4e-166 587.4 410 70.7
FAN02G2738 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.1e-165 587.0 398 71.4
CiPaw.10G024300 Carya illinoinensis HOM05D004880 ORTHO05D006130 2.4e-165 585.9 408 71.1
FAN05G5497 Fragaria x ananassa HOM05D004880 ORTHO05D006130 4.2e-165 585.1 398 71.4
TAR636G0255 Trochodendron aralioides HOM05D004880 ORTHO05D006130 7.1e-165 584.3 408 71.3
SalBow6G2644 Salvia bowleyana HOM05D004880 ORTHO05D006130 1.2e-164 583.6 408 71.3
Ciclev10011869m.g Citrus clementina HOM05D004880 ORTHO05D006130 2.7e-164 582.4 409 69.4
SGA_v2.0_scaffold274G46503 Striga asiatica HOM05D004880 ORTHO05D006130 4.6e-164 581.6 402 71.4
PGR142G4320 Punica granatum HOM05D004880 ORTHO05D006130 6.0e-164 581.3 409 70.9
TAR633G2404 Trochodendron aralioides HOM05D004880 ORTHO05D006130 6.0e-164 581.3 408 70.3
DCAR_017041 Daucus carota HOM05D004880 ORTHO05D006130 7.8e-164 580.9 409 71.4
Manes.09G040000 Manihot esculenta HOM05D004880 ORTHO05D006130 1.0e-163 580.5 408 70.6
FAN09G2092 Fragaria x ananassa HOM05D004880 ORTHO05D006130 5.1e-163 578.2 394 71.1
AUR62015294 Chenopodium quinoa HOM05D004880 ORTHO05D006130 8.7e-163 577.4 409 69.2
HanXRQChr14g0438921 Helianthus annuus HOM05D004880 ORTHO05D006130 8.7e-163 577.4 410 70.5
Cpa.g.sc85.30 Carica papaya HOM05D004880 ORTHO05D006130 1.5e-162 576.6 408 67.9
Sc13g0002510 Simmondsia chinensis HOM05D004880 ORTHO05D006130 1.6e-161 573.2 408 69.9
ClCG04G001360 Citrullus lanatus HOM05D004880 ORTHO05D006130 2.1e-161 572.8 408 68.4
Lsat_1_v5_gn_2_57080 Lactuca sativa HOM05D004880 ORTHO05D006130 1.1e-160 570.5 406 71.4
Glyma.19G204500 Glycine max HOM05D004880 ORTHO05D006130 9.0e-160 567.4 407 69.0
VMungo1383G0203 Vigna mungo HOM05D004880 ORTHO05D006130 1.2e-159 567.0 407 69.5
CsaV3_4G031170 Cucumis sativus L. HOM05D004880 ORTHO05D006130 3.4e-159 565.5 408 67.2
Glyma.03G207000 Glycine max HOM05D004880 ORTHO05D006130 3.4e-159 565.5 407 69.5
HanXRQChr01g0024571 Helianthus annuus HOM05D004880 ORTHO05D006130 3.4e-159 565.5 410 69.3
COL.COLO4_29395 Corchorus olitorius HOM05D004880 ORTHO05D006130 7.6e-159 564.3 408 69.4
PSO339G2581 Papaver somniferum HOM05D004880 ORTHO05D006130 7.6e-159 564.3 406 68.5
EL10Ac3g06851 Beta vulgaris HOM05D004880 ORTHO05D006130 9.9e-159 563.9 402 68.7
Lsat_1_v5_gn_1_60360 Lactuca sativa HOM05D004880 ORTHO05D006130 1.7e-158 563.1 409 68.9
Phvul.001G200400 Phaseolus vulgaris HOM05D004880 ORTHO05D006130 1.7e-158 563.1 407 68.8
CSS0031126 Camellia sinensis var. sinensis HOM05D004880 ORTHO05D006130 6.4e-158 561.2 408 70.6
Lj1g0004925 Lotus japonicus HOM05D004880 ORTHO05D006130 8.4e-158 560.8 402 70.1
PSO384G1868 Papaver somniferum HOM05D004880 ORTHO05D006130 8.4e-158 560.8 406 68.2
ECA248G1283 Erigeron canadensis HOM05D004880 ORTHO05D006130 2.4e-157 559.3 406 69.7
DCAR_013674 Daucus carota HOM05D004880 ORTHO05D006130 9.3e-157 557.4 431 65.7
Sed0002439 Sechium edule HOM05D004880 ORTHO05D006130 4.6e-156 555.1 408 66.7
Thhalv10006516m.g Eutrema salsugineum HOM05D004880 ORTHO05D006130 2.3e-155 552.7 412 66.7
Peaxi162Scf00463g00322 Petunia axillaris HOM05D004880 ORTHO05D006130 2.3e-155 552.7 408 69.1
MELO3C008990.2 Cucumis melo HOM05D004880 ORTHO05D006130 8.7e-155 550.8 408 66.7
Sp5g04380 Schrenkiella parvula HOM05D004880 ORTHO05D006130 1.1e-154 550.4 412 66.3
CARHR168890 Cardamine hirsuta HOM05D004880 ORTHO05D006130 4.3e-154 548.5 406 66.5
Ca_09100_v3 Cicer arietinum L. HOM05D004880 ORTHO05D006130 1.3e-153 547.0 408 67.2
Lj2A362T41 Lonicera japonica HOM05D004880 ORTHO05D006130 1.6e-153 546.6 494 59.9
vmacro12554 Vaccinium macrocarpon HOM05D004880 ORTHO05D006130 1.6e-153 546.6 356 75.8
TPR.G32306 Trifolium pratense HOM05D004880 ORTHO05D006130 4.8e-153 545.0 408 67.2
Medtr7g107270 Medicago truncatula HOM05D004880 ORTHO05D006130 8.1e-153 544.3 402 66.7
Aa31LG10G13060 Aethionema arabicum HOM05D004880 ORTHO05D006130 1.4e-152 543.5 409 66.5
Ah.13g075550 Amaranthus hybridus HOM05D004880 ORTHO05D006130 1.8e-152 543.1 409 65.3
arahy.Tifrunner.gnm1.ann1.LHW1VF Arachis hypogaea HOM05D004880 ORTHO05D006130 1.8e-152 543.1 402 68.2
Lalb_Chr01g0017621 Lupinus albus HOM05D004880 ORTHO05D006130 1.8e-152 543.1 392 68.6
BcaC08g44920 Brassica carinata HOM05D004880 ORTHO05D006130 4.0e-152 542.0 412 65.5
C06p25460 Brassica napus HOM05D004880 ORTHO05D006130 4.0e-152 542.0 412 65.5
BolC6t37708H Brassica oleracea HOM05D004880 ORTHO05D006130 4.0e-152 542.0 412 65.5
THA.LOC104802772 Tarenaya hassleriana HOM05D004880 ORTHO05D006130 4.0e-152 542.0 409 65.8
MBI04_g09734_MAGBIO Magnolia biondii HOM05D004880 ORTHO05D006130 5.3e-152 541.6 406 66.3
arahy.Tifrunner.gnm1.ann1.4QW8I5 Arachis hypogaea HOM05D004880 ORTHO05D006130 6.9e-152 541.2 402 68.2
AT3G58490 Arabidopsis thaliana HOM05D004880 ORTHO05D006130 1.2e-151 540.4 409 64.8
A07p24150 Brassica napus HOM05D004880 ORTHO05D006130 1.2e-151 540.4 412 65.3
BraA07t30059Z Brassica rapa HOM05D004880 ORTHO05D006130 2.0e-151 539.7 412 65.0
AL5G40260 Arabidopsis lyrata HOM05D004880 ORTHO05D006130 1.3e-150 537.0 406 66.0
Aa31LG1G24310 Aethionema arabicum HOM05D004880 ORTHO05D006130 4.2e-149 531.9 406 65.8
Carub.0005s2524 Capsella rubella HOM05D004880 ORTHO05D006130 5.4e-149 531.6 406 64.0
TAR623G0618 Trochodendron aralioides HOM05D004880 ORTHO05D006130 7.1e-149 531.2 353 73.1
Lalb_Chr25g0287641 Lupinus albus HOM05D004880 ORTHO05D006130 1.2e-148 530.4 396 65.9
Os03g0805400 Oryza sativa ssp. japonica HOM05D004880 ORTHO05D006130 4.6e-148 528.5 405 63.7
PSO384G4146 Papaver somniferum HOM05D004880 ORTHO05D006130 7.4e-146 521.2 402 63.4
ECA238G1506 Erigeron canadensis HOM05D004880 ORTHO05D001620 2.8e-145 519.2 353 73.4
PSO339G4595 Papaver somniferum HOM05D004880 ORTHO05D006130 2.8e-145 519.2 402 63.4
ATR0001G036 Amborella trichopoda HOM05D004880 ORTHO05D006130 1.1e-144 517.3 408 63.5
AUR62032743 Chenopodium quinoa HOM05D004880 ORTHO05D006130 1.8e-139 500.0 409 62.1
Zm00001eb061460 Zea mays HOM05D004880 ORTHO05D006130 7.4e-138 494.6 407 60.7
HPP92_023567 Vanilla planifolia HOM05D004880 ORTHO05D006130 5.3e-136 488.4 402 59.7
Cfa020124 Carpinus fangiana HOM05D004880 ORTHO05D006130 6.5e-134 481.5 313 75.4
SEGI_41601 Sequoiadendron giganteum HOM05D004880 ORTHO05D006130 3.0e-131 472.6 416 57.2
HPP92_007945 Vanilla planifolia HOM05D004880 ORTHO05D006130 4.5e-127 458.8 402 58.5
SHI30063 Sapria himalayana HOM05D004880 ORTHO05D006130 1.2e-119 434.1 408 55.9
Ah.04g153030 Amaranthus hybridus HOM05D004880 ORTHO05D006130 2.5e-117 426.4 315 66.7
CDE10G0990 Ceratophyllum demersum HOM05D004880 ORTHO05D006130 3.2e-109 399.4 360 55.3
Zm00001eb212610 Zea mays HOM05D004880 ORTHO05D006130 5.5e-109 398.7 315 63.8
Psat3g026000 Pisum sativum HOM05D004880 ORTHO05D006130 6.1e-108 395.2 272 71.3
Hund19219 Selenicereus undatus HOM05D004880 ORTHO05D006130 5.3e-104 382.1 272 68.4
Hma1.2p1_0124F.1_g058410 Hydrangea macrophylla HOM05D004880 ORTHO05D006130 2.3e-99 366.7 267 70.8
SMO356G0032 Selaginella moellendorffii HOM05D004880 ORTHO05D006130 1.1e-96 357.8 410 48.8
Mapoly0023s0042 Marchantia polymorpha HOM05D004880 ORTHO05D006130 1.4e-96 357.5 422 45.7
Rhsim03G0002900 Rhododendron simsii HOM05D004880 ORTHO05D006130 3.1e-96 356.3 419 52.0
AagrBONN_evm.TU.Sc2ySwM_362.985 Anthoceros agrestis HOM05D004880 ORTHO05D006130 2.9e-94 349.7 414 47.3
Pp3c11_15430 Physcomitrium patens HOM05D004880 ORTHO05D006130 2.3e-86 323.6 412 44.4
Oeu057591.1 Olea europaea HOM05D004880 ORTHO05D006130 3.3e-77 293.1 176 79.0
Lalb_Chr20g0111081 Lupinus albus HOM05D004880 ORTHO05D006130 5.6e-77 292.4 247 61.9
Pp3c2_26340 Physcomitrium patens HOM05D004880 ORTHO05D006130 1.1e-72 278.1 443 37.9
Dinv16340 Davidia involucrata HOM05D004880 ORTHO05D006130 3.6e-68 263.1 161 78.9
Dinv16341 Davidia involucrata HOM05D004880 ORTHO05D006130 9.2e-64 248.4 173 72.3
Actinidia17290 Actinidia chinensis HOM05D000477 ORTHO05D000338 3.0e-62 243.4 184 69.6
HPP92_020367 Vanilla planifolia HOM05D004880 ORTHO05D006130 1.2e-58 231.5 213 56.3
Zm00001eb272460 Zea mays HOM05D004880 ORTHO05D006130 1.7e-57 227.6 163 65.0
HPP92_020366 Vanilla planifolia HOM05D004880 ORTHO05D006130 6.2e-52 209.1 193 57.0
FvH4_1g29340 Fragaria vesca HOM05D004880 ORTHO05D006130 1.5e-50 204.5 134 73.9
Zm00001eb359710 Zea mays HOM05D004880 ORTHO05D006130 4.4e-50 203.0 148 65.5
CBR_g27899 Chara braunii HOM05D004880 ORTHO05D006130 2.2e-49 200.7 341 37.2
Lalb_Chr20g0111071 Lupinus albus HOM05D004880 ORTHO05D006130 2.4e-48 197.2 112 82.1
RhsimUnG0012500 Rhododendron simsii HOM05D001884 ORTHO05D001890 2.1e-31 141.0 92 73.9
BcaB02g07520 Brassica carinata HOM05D004880 ORTHO05D006130 6.2e-28 129.4 104 62.5
RhsimUnG0013900 Rhododendron simsii HOM05D004880 ORTHO05D050686 3.8e-25 120.2 96 67.7
RcHm_v2.0_Chr2g0108301 Rosa chinensis HOM05D004880 ORTHO05D050686 3.8e-17 93.6 83 57.8
Cfa025525 Carpinus fangiana HOM05D004880 ORTHO05D125807 5.0e-17 93.2 295 28.8
RcHm_v2.0_Chr2g0108291 Rosa chinensis HOM05D004880 ORTHO05D006130 1.4e-16 91.7 70 61.4
Migut.J01865 Erythranthe guttata HOM05D004880 ORTHO05D006130 5.3e-11 73.2 57 64.9


User provided reference genes

Program Settings