Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g23060 Coffea canephora HOM05D003715 ORTHO05D003958 3.3e-78 295.0 155 100.0
Manes.08G145000 Manihot esculenta HOM05D003715 ORTHO05D003958 2.9e-42 175.6 173 56.6
QL07p018445 Quercus lobata HOM05D003715 ORTHO05D003958 1.3e-39 166.8 184 53.8
Manes.09G140500 Manihot esculenta HOM05D003715 ORTHO05D003958 3.9e-39 165.2 172 54.1
Actinidia30549 Actinidia chinensis HOM05D003715 ORTHO05D003958 5.1e-39 164.9 191 54.5
Potri.019G035600 Populus trichocarpa HOM05D003715 ORTHO05D003958 8.7e-39 164.1 184 54.9
Cfa001533 Carpinus fangiana HOM05D003715 ORTHO05D003958 3.3e-38 162.2 185 52.4
Haze_19430 Corylus avellana HOM05D003715 ORTHO05D003958 1.3e-37 160.2 190 50.5
Sabra19G0044200 Salix brachista HOM05D003715 ORTHO05D003958 1.3e-37 160.2 184 53.3
Sabra19G0047500 Salix brachista HOM05D003715 ORTHO05D003958 1.3e-37 160.2 184 53.3
VMungo0464G1653 Vigna mungo HOM05D003715 ORTHO05D003958 1.3e-37 160.2 175 50.9
Potri.013G057200 Populus trichocarpa HOM05D003715 ORTHO05D003958 4.8e-37 158.3 184 53.3
Actinidia22080 Actinidia chinensis HOM05D003715 ORTHO05D003958 8.1e-37 157.5 192 52.1
Dinv37021 Davidia involucrata HOM05D003715 ORTHO05D003958 1.1e-36 157.1 176 52.3
TWI32G0411 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 2.4e-36 156.0 173 51.4
COL.COLO4_36085 Corchorus olitorius HOM05D003715 ORTHO05D003958 4.0e-36 155.2 161 58.4
Duzib106G1922 Durio zibethinus HOM05D003715 ORTHO05D003958 4.0e-36 155.2 165 55.8
Eucgr.A02102 Eucalyptus grandis HOM05D003715 ORTHO05D003958 4.0e-36 155.2 183 50.8
Hund19231 Selenicereus undatus HOM05D003715 ORTHO05D003958 6.9e-36 154.5 171 49.1
Gorai.007G262000 Gossypium raimondii HOM05D003715 ORTHO05D003958 9.0e-36 154.1 164 53.7
Thecc.05G249800 Theobroma cacao HOM05D003715 ORTHO05D003958 9.0e-36 154.1 164 53.7
Hma1.2p1_0152F.1_g067600 Hydrangea macrophylla HOM05D003715 ORTHO05D003958 1.2e-35 153.7 167 52.1
Phvul.004G080700 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 1.2e-35 153.7 175 49.1
vmacro12564 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 1.2e-35 153.7 183 53.6
Gohir.A11G235300 Gossypium hirsutum HOM05D003715 ORTHO05D003958 1.5e-35 153.3 164 53.7
TWI34G1349 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 2.6e-35 152.5 185 48.1
CiPaw.10G001300 Carya illinoinensis HOM05D003715 ORTHO05D003958 3.4e-35 152.1 186 49.5
Sabra13G0051000 Salix brachista HOM05D003715 ORTHO05D003958 7.6e-35 151.0 184 52.7
TAR623G0055 Trochodendron aralioides HOM05D003715 ORTHO05D003958 2.9e-34 149.1 178 48.9
Nitab4.5_0000658g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 3.8e-34 148.7 173 52.0
Glyma.16G153700 Glycine max HOM05D003715 ORTHO05D003958 4.9e-34 148.3 175 48.6
PSO384G3755 Papaver somniferum HOM05D003715 ORTHO05D003958 6.4e-34 147.9 177 49.2
Nitab4.5_0002769g0040 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.4e-33 146.7 165 54.5
Dinv14575 Davidia involucrata HOM05D003715 ORTHO05D003958 2.4e-33 146.0 180 51.7
Oeu035703.1 Olea europaea HOM05D003715 ORTHO05D003958 3.2e-33 145.6 173 51.4
MBI01_g25640_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 4.2e-33 145.2 181 47.5
MSTRG.26069 Avicennia marina HOM05D003715 ORTHO05D003958 5.4e-33 144.8 163 55.2
Solyc10g078590.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 7.1e-33 144.4 160 54.4
PGSC0003DMG400008354 Solanum tuberosum HOM05D003715 ORTHO05D003958 7.1e-33 144.4 160 55.0
ClCG04G005350 Citrullus lanatus HOM05D003715 ORTHO05D003958 1.6e-32 143.3 181 46.4
Oeu024502.1 Olea europaea HOM05D003715 ORTHO05D003958 1.6e-32 143.3 172 51.7
Peaxi162Scf00463g00019 Petunia axillaris HOM05D003715 ORTHO05D003958 1.6e-32 143.3 166 50.0
PSO339G5928 Papaver somniferum HOM05D003715 ORTHO05D003958 2.1e-32 142.9 177 48.0
Sopen10g029220 Solanum pennellii HOM05D003715 ORTHO05D003958 2.1e-32 142.9 160 53.8
Nitab4.5_0000358g0150 Nicotiana tabacum HOM05D003715 ORTHO05D003958 2.7e-32 142.5 160 51.9
DCAR_019875 Daucus carota HOM05D003715 ORTHO05D003958 3.5e-32 142.1 160 48.8
Sc13g0002630 Simmondsia chinensis HOM05D003715 ORTHO05D003958 3.5e-32 142.1 173 47.4
Gohir.D11G246200 Gossypium hirsutum HOM05D003715 ORTHO05D003958 4.6e-32 141.7 181 48.1
Ciclev10021362m.g Citrus clementina HOM05D003715 ORTHO05D003958 7.9e-32 141.0 173 57.8
CsaV3_4G013240 Cucumis sativus L. HOM05D003715 ORTHO05D003958 1.8e-31 139.8 179 46.4
Lalb_Chr02g0157161 Lupinus albus HOM05D003715 ORTHO05D003958 1.8e-31 139.8 158 49.4
Ca_04486_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 3.0e-31 139.0 158 51.3
MELO3C008806.2 Cucumis melo HOM05D003715 ORTHO05D003958 3.0e-31 139.0 179 46.9
Lj1g0002462 Lotus japonicus HOM05D003715 ORTHO05D003958 3.0e-31 139.0 167 48.5
Glyma.02G072500 Glycine max HOM05D003715 ORTHO05D003958 3.9e-31 138.7 176 47.2
Aqoxy2G00514 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 3.3e-30 135.6 173 45.7
Lj1g0012553 Lotus japonicus HOM05D003715 ORTHO05D003958 5.6e-30 134.8 167 47.9
PGR042G0616 Punica granatum HOM05D003715 ORTHO05D003958 5.6e-30 134.8 175 49.7
Ca_08274_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 7.4e-30 134.4 159 48.4
MBI04_g47731_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 9.6e-30 134.0 179 45.3
MBI04_g28023_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 1.6e-29 133.3 181 45.3
Atru.chr2.1400 Acer truncatum HOM05D003715 ORTHO05D003958 2.8e-29 132.5 167 48.5
PGR142G1981 Punica granatum HOM05D003715 ORTHO05D003958 3.7e-29 132.1 180 46.7
TPR.G5870 Trifolium pratense HOM05D003715 ORTHO05D003958 8.1e-29 131.0 164 48.2
Medtr6g029250 Medicago truncatula HOM05D003715 ORTHO05D003958 1.4e-28 130.2 155 49.0
TPR.G9142 Trifolium pratense HOM05D003715 ORTHO05D003958 1.8e-28 129.8 154 47.4
Psat1g091040 Pisum sativum HOM05D003715 ORTHO05D003958 2.4e-28 129.4 155 49.0
EL10Ac3g06828 Beta vulgaris HOM05D003715 ORTHO05D003958 3.1e-28 129.0 179 44.1
Sed0021221 Sechium edule HOM05D003715 ORTHO05D003958 1.2e-27 127.1 170 46.5
Medtr7g085790 Medicago truncatula HOM05D003715 ORTHO05D003958 4.5e-27 125.2 160 46.9
Psat3g088760 Pisum sativum HOM05D003715 ORTHO05D003958 4.5e-27 125.2 161 47.2
arahy.Tifrunner.gnm1.ann1.V3MY1S Arachis hypogaea HOM05D003715 ORTHO05D003958 1.0e-26 124.0 102 58.8
HanXRQChr14g0438161 Helianthus annuus HOM05D003715 ORTHO05D003958 1.3e-26 123.6 169 45.0
PSO781G0019 Papaver somniferum HOM05D003715 ORTHO05D003958 1.3e-26 123.6 180 43.3
Glyma.16G040300 Glycine max HOM05D003715 ORTHO05D003958 2.2e-26 122.9 118 53.4
Peaxi162Scf00003g04827 Petunia axillaris HOM05D003715 ORTHO05D003958 2.2e-26 122.9 158 49.4
Sed0002226 Sechium edule HOM05D003715 ORTHO05D003958 1.1e-25 120.6 179 42.5
SGA_v2.0_scaffold94G28404 Striga asiatica HOM05D003715 ORTHO05D003958 1.1e-25 120.6 161 49.7
Ah.13g075440 Amaranthus hybridus HOM05D006363 ORTHO05D007920 1.4e-25 120.2 175 42.3
Eucgr.K01502 Eucalyptus grandis HOM05D003715 ORTHO05D003958 1.9e-25 119.8 158 48.1
Glyma.19G112800 Glycine max HOM05D003715 ORTHO05D003958 2.5e-25 119.4 173 43.4
Lalb_Chr14g0364551 Lupinus albus HOM05D003715 ORTHO05D003958 1.2e-24 117.1 163 44.8
Nn2g12054 Nelumbo nucifera HOM05D003715 ORTHO05D003958 2.1e-24 116.3 166 42.8
Duzib128G0041 Durio zibethinus HOM05D003715 ORTHO05D003958 3.5e-24 115.5 162 50.0
Phvul.001G111500 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 7.9e-24 114.4 165 43.0
Lalb_Chr22g0359081 Lupinus albus HOM05D003715 ORTHO05D003958 1.3e-23 113.6 173 42.2
Nitab4.5_0001079g0120 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.3e-23 113.6 155 45.8
Carub.0006s1642 Capsella rubella HOM05D003715 ORTHO05D003958 1.8e-23 113.2 160 45.6
ECA238G2879 Erigeron canadensis HOM05D003715 ORTHO05D003958 1.8e-23 113.2 167 40.7
AL6G29330 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 2.3e-23 112.8 168 42.9
CANSAT78G1806 Cannabis sativa HOM05D003715 ORTHO05D003958 2.3e-23 112.8 97 53.6
ECA233G0839 Erigeron canadensis HOM05D003715 ORTHO05D003958 2.3e-23 112.8 167 42.5
AT5G18130 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 3.0e-23 112.5 168 43.5
Prupe.7G006100 Prunus persica HOM05D003715 ORTHO05D003958 3.3e-22 109.0 174 42.0
Thhalv10021350m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 4.3e-22 108.6 163 44.8
Nitab4.5_0000394g0140 Nicotiana tabacum HOM05D003715 ORTHO05D003958 4.3e-22 108.6 173 46.2
AT3G03870 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 5.7e-22 108.2 166 45.2
RcHm_v2.0_Chr3g0497011 Rosa chinensis HOM05D003715 ORTHO05D003958 7.4e-22 107.8 167 46.7
AL3G13760 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 9.6e-22 107.5 166 45.8
Lsat_1_v5_gn_6_37461 Lactuca sativa HOM05D003715 ORTHO05D003958 1.3e-21 107.1 164 39.0
BcaNung05741 Brassica carinata HOM05D003715 ORTHO05D003958 1.6e-21 106.7 165 46.7
Thhalv10014292m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 1.6e-21 106.7 173 41.6
Sp6g26180 Schrenkiella parvula HOM05D003715 ORTHO05D003958 1.6e-21 106.7 170 44.1
BcaC05g30247 Brassica carinata HOM05D003715 ORTHO05D003958 2.1e-21 106.3 163 46.0
arahy.Tifrunner.gnm1.ann1.KTU7AY Arachis hypogaea HOM05D003715 ORTHO05D003958 3.7e-21 105.5 157 43.9
ATR0737G080 Amborella trichopoda HOM05D003715 ORTHO05D003958 4.8e-21 105.1 117 49.6
BcaB08g36703 Brassica carinata HOM05D003715 ORTHO05D003958 4.8e-21 105.1 168 41.7
A02p04750 Brassica napus HOM05D003715 ORTHO05D003958 4.8e-21 105.1 168 40.5
HanXRQChr13g0397871 Helianthus annuus HOM05D003715 ORTHO05D003958 6.2e-21 104.8 168 36.9
C02p09710 Brassica napus HOM05D003715 ORTHO05D003958 8.2e-21 104.4 167 41.3
Cpa.g.sc51.130 Carica papaya HOM05D003715 ORTHO05D003958 8.2e-21 104.4 153 45.8
VMungo1383G2890 Vigna mungo HOM05D003715 ORTHO05D003958 8.2e-21 104.4 99 52.5
BolC9t58728H Brassica oleracea HOM05D003715 ORTHO05D003958 1.1e-20 104.0 169 43.2
A03p08670 Brassica napus HOM05D003715 ORTHO05D003958 1.4e-20 103.6 167 42.5
A10p21370 Brassica napus HOM05D003715 ORTHO05D003958 1.4e-20 103.6 167 42.5
BraA10t44200Z Brassica rapa HOM05D003715 ORTHO05D003958 1.4e-20 103.6 167 42.5
BcaC05g29901 Brassica carinata HOM05D003715 ORTHO05D003958 1.8e-20 103.2 165 44.2
C09p58840 Brassica napus HOM05D003715 ORTHO05D003958 1.8e-20 103.2 171 43.9
BolC5t34973H Brassica oleracea HOM05D003715 ORTHO05D003958 1.8e-20 103.2 165 44.2
CARHR077990 Cardamine hirsuta HOM05D003715 ORTHO05D003958 2.4e-20 102.8 165 43.6
Sp3g02840 Schrenkiella parvula HOM05D003715 ORTHO05D003958 2.4e-20 102.8 165 46.1
TAR633G2492 Trochodendron aralioides HOM05D003715 ORTHO05D003958 2.4e-20 102.8 187 39.6
Carub.0003s0306 Capsella rubella HOM05D003715 ORTHO05D003958 3.1e-20 102.4 174 43.7
BcaB01g06399 Brassica carinata HOM05D003715 ORTHO05D003958 4.0e-20 102.1 167 41.3
A05p43520 Brassica napus HOM05D003715 ORTHO05D003958 4.0e-20 102.1 167 44.9
BolC2t06880H Brassica oleracea HOM05D003715 ORTHO05D003958 4.0e-20 102.1 167 40.7
CARHR194940 Cardamine hirsuta HOM05D003715 ORTHO05D003958 4.0e-20 102.1 166 43.4
THA.LOC104820776 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 4.0e-20 102.1 163 43.6
CSS0027479 Camellia sinensis var. sinensis HOM05D003715 ORTHO05D003958 6.9e-20 101.3 101 54.5
BcaB05g23302 Brassica carinata HOM05D003715 ORTHO05D003958 1.2e-19 100.5 167 41.3
BraA02t05434Z Brassica rapa HOM05D003715 ORTHO05D003958 1.2e-19 100.5 167 40.1
BcaB01g05177 Brassica carinata HOM05D003715 ORTHO05D003958 1.5e-19 100.1 166 44.0
C03p10110 Brassica napus HOM05D003715 ORTHO05D003958 1.5e-19 100.1 166 44.0
BolC1t05801H Brassica oleracea HOM05D003715 ORTHO05D003958 1.5e-19 100.1 163 42.9
BolC3t13497H Brassica oleracea HOM05D003715 ORTHO05D003958 1.5e-19 100.1 166 44.0
BraA03t10190Z Brassica rapa HOM05D003715 ORTHO05D003958 1.5e-19 100.1 166 44.0
Nitab4.5_0009367g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 2.0e-19 99.8 156 46.2
vmacro09135 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 2.6e-19 99.4 131 49.6
CiPaw.09G002400 Carya illinoinensis HOM05D003715 ORTHO05D003958 3.4e-19 99.0 134 44.8
Aa31LG11G11470 Aethionema arabicum HOM05D003715 ORTHO05D003958 4.5e-19 98.6 154 40.3
BcaC03g13579 Brassica carinata HOM05D003715 ORTHO05D003958 7.6e-19 97.8 167 38.9
MD12G1005100 Malus domestica HOM05D003715 ORTHO05D003958 1.0e-18 97.4 160 47.5
Actinidia38611 Actinidia chinensis HOM05D003715 ORTHO05D003958 2.2e-18 96.3 139 42.4
MD14G1003600 Malus domestica HOM05D003715 ORTHO05D003958 2.2e-18 96.3 167 39.5
SalBow1G3164 Salvia bowleyana HOM05D003715 ORTHO05D003958 2.2e-18 96.3 156 47.4
HanXRQChr02g0054571 Helianthus annuus HOM05D003715 ORTHO05D003958 2.9e-18 95.9 162 38.3
BraA05t23092Z Brassica rapa HOM05D003715 ORTHO05D003958 3.8e-18 95.5 163 43.6
FAN23G0877 Fragaria x ananassa HOM05D003715 ORTHO05D003958 6.5e-18 94.7 163 41.1
MBI04_g37012_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 1.1e-17 94.0 173 36.4
FvH4_1g28230 Fragaria vesca HOM05D003715 ORTHO05D003958 1.4e-17 93.6 165 41.2
FAN26G1768 Fragaria x ananassa HOM05D003715 ORTHO05D003958 1.9e-17 93.2 162 41.4
PGSC0003DMG400023700 Solanum tuberosum HOM05D003715 ORTHO05D003958 1.9e-17 93.2 156 46.8
CDE02G4343 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 3.2e-17 92.4 181 38.7
BcaC05g30288 Brassica carinata HOM05D003715 ORTHO05D003958 4.2e-17 92.0 96 55.2
Rhsim04G0091400 Rhododendron simsii HOM05D006013 ORTHO05D007383 4.2e-17 92.0 138 45.7
Sopen10g031210 Solanum pennellii HOM05D003715 ORTHO05D003958 7.1e-17 91.3 160 46.2
Solyc10g080670.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 2.7e-16 89.4 160 45.0
AUR62032043 Chenopodium quinoa HOM05D003715 ORTHO05D003958 6.1e-16 88.2 156 37.8
Os03g0806600 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 6.1e-16 88.2 102 44.1
Aa31LG5G14450 Aethionema arabicum HOM05D003715 ORTHO05D003958 7.9e-16 87.8 157 40.1
FAN28G3019 Fragaria x ananassa HOM05D003715 ORTHO05D003958 7.9e-16 87.8 165 40.6
CDE05G3048 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 2.3e-15 86.3 178 36.5
Nn7g35866 Nelumbo nucifera HOM05D003715 ORTHO05D003958 3.0e-15 85.9 161 39.1
TAR369G0375 Trochodendron aralioides HOM05D003715 ORTHO05D003958 1.5e-14 83.6 138 37.7
Ah.04g153150 Amaranthus hybridus HOM05D003715 ORTHO05D003958 1.9e-14 83.2 173 37.0
Aqoxy1G00472 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 2.5e-14 82.8 160 34.4
arahy.Tifrunner.gnm1.ann1.FCYU2S Arachis hypogaea HOM05D003715 ORTHO05D003958 3.3e-14 82.4 168 36.3
THA.LOC104802870 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 5.7e-14 81.6 95 49.5
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 4.8e-13 78.6 77 53.2
AUR62032710 Chenopodium quinoa HOM05D003715 ORTHO05D003958 6.3e-13 78.2 155 36.8
Duzib106G0556 Durio zibethinus HOM05D003715 ORTHO05D003958 5.3e-12 75.1 94 47.9
Os07g0204100 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 4.5e-11 72.0 94 51.1
PSO384G3057 Papaver somniferum HOM05D003715 ORTHO05D003958 2.2e-10 69.7 146 34.9
HPP92_014229 Vanilla planifolia HOM05D035551 ORTHO05D003958 3.8e-10 68.9 152 34.9
Zm00001eb302900 Zea mays HOM05D003715 ORTHO05D003958 3.8e-10 68.9 98 38.8
arahy.Tifrunner.gnm1.ann1.85Z4HY Arachis hypogaea HOM05D003715 ORTHO05D003958 1.4e-09 67.0 100 39.0
PSO782G0808 Papaver somniferum HOM05D003715 ORTHO05D003958 1.9e-09 66.6 143 35.0
Peaxi162Scf00249g00717 Petunia axillaris HOM05D003715 ORTHO05D003958 1.0e-07 60.8 151 37.1
Lsat_1_v5_gn_2_58261 Lactuca sativa HOM05D003715 ORTHO05D003958 2.3e-07 59.7 130 33.8
unitig_0.g211 Utricularia gibba HOM05D003715 ORTHO05D003958 3.0e-07 59.3 147 33.3
CDE02G1486 Ceratophyllum demersum HOM05D002360 ORTHO05D006297 2.5e-06 56.2 105 38.1


User provided reference genes

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