Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g23020 Coffea canephora HOM05D004137 ORTHO05D004804 2.7e-42 175.3 110 100.0
CAN.G960.46 Capsicum annuum HOM05D004137 ORTHO05D004804 8.9e-22 107.1 62 74.2
Solyc10g078570.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 4.4e-21 104.8 62 72.6
PGSC0003DMG400008382 Solanum tuberosum HOM05D004137 ORTHO05D004804 4.4e-21 104.8 62 72.6
Migut.J01885 Erythranthe guttata HOM05D004137 ORTHO05D004804 6.4e-20 100.9 62 72.6
Lsat_1_v5_gn_1_59720 Lactuca sativa HOM05D004137 ORTHO05D004804 1.2e-18 96.7 64 68.8
Nn7g35858 Nelumbo nucifera HOM05D004137 ORTHO05D004804 3.9e-17 91.7 66 68.2
Nn2g15861 Nelumbo nucifera HOM05D004137 ORTHO05D004804 9.6e-16 87.0 62 66.1
TAR623G1005 Trochodendron aralioides HOM05D004137 ORTHO05D004804 1.2e-15 86.7 62 66.1
Cpa.g.sc51.119 Carica papaya HOM05D004137 ORTHO05D004804 2.8e-15 85.5 64 65.6
Ah.13g075420 Amaranthus hybridus HOM05D004137 ORTHO05D004804 3.6e-15 85.1 60 66.7
Gohir.A12G175500 Gossypium hirsutum HOM05D004137 ORTHO05D004804 6.2e-15 84.3 69 56.5
vmacro20990 Vaccinium macrocarpon HOM05D004137 ORTHO05D004804 1.1e-14 83.6 62 64.5
Gohir.D12G178750 Gossypium hirsutum HOM05D004137 ORTHO05D004804 1.8e-14 82.8 64 59.4
Gorai.008G191500 Gossypium raimondii HOM05D004137 ORTHO05D004804 3.1e-14 82.0 64 57.8
Manes.08G144511 Manihot esculenta HOM05D004137 ORTHO05D004804 3.1e-14 82.0 69 55.1
Ciclev10023092m.g Citrus clementina HOM05D004137 ORTHO05D004804 6.9e-14 80.9 59 57.6
PGSC0003DMG400023737 Solanum tuberosum HOM05D004137 ORTHO05D004804 9.0e-14 80.5 62 59.7
Haze_19423 Corylus avellana HOM05D004137 ORTHO05D004804 2.6e-13 79.0 62 61.3
FvH4_4g27600 Fragaria vesca HOM05D004137 ORTHO05D004804 2.6e-13 79.0 51 72.5
Potri.013G057832 Populus trichocarpa HOM05D004137 ORTHO05D004804 3.4e-13 78.6 63 54.0
ClCG10G013400 Citrullus lanatus HOM05D004137 ORTHO05D004804 5.8e-13 77.8 60 60.0
Potri.013G057766 Populus trichocarpa HOM05D004137 ORTHO05D004804 5.8e-13 77.8 65 53.8
MELO3C026884.2 Cucumis melo HOM05D004137 ORTHO05D004804 7.6e-13 77.4 60 56.7
Cfa016445 Carpinus fangiana HOM05D001721 ORTHO05D001804 9.9e-13 77.0 60 61.7
Manes.09G141000 Manihot esculenta HOM05D004137 ORTHO05D004804 1.7e-12 76.3 69 50.7
ATR0737G017 Amborella trichopoda HOM05D004137 ORTHO05D004804 3.8e-12 75.1 65 53.8
CSS0017288 Camellia sinensis var. sinensis HOM05D004137 ORTHO05D004804 3.8e-12 75.1 63 58.7
QL01p003617 Quercus lobata HOM05D004137 ORTHO05D004804 3.8e-12 75.1 62 56.5
Prupe.7G004500 Prunus persica HOM05D004137 ORTHO05D004804 6.4e-12 74.3 60 61.7
Sed0004008 Sechium edule HOM05D004137 ORTHO05D004804 6.4e-12 74.3 60 53.3
CANSAT11G0501 Cannabis sativa HOM05D004137 ORTHO05D004804 8.4e-12 73.9 62 59.7
CiPaw.09G002200 Carya illinoinensis HOM05D004137 ORTHO05D004804 8.4e-12 73.9 55 61.8
DCAR_023854 Daucus carota HOM05D004137 ORTHO05D004804 9.3e-11 70.5 70 50.0
MD11G1003200 Malus domestica HOM05D004137 ORTHO05D004804 9.3e-11 70.5 62 54.8
Prupe.6G003100 Prunus persica HOM05D004137 ORTHO05D004804 9.3e-11 70.5 62 56.5
Haze_22939 Corylus avellana HOM05D004137 ORTHO05D004804 2.1e-10 69.3 60 53.3
Lalb_Chr14g0364521 Lupinus albus HOM05D004137 ORTHO05D004804 4.6e-10 68.2 55 58.2
MD03G1003400 Malus domestica HOM05D004137 ORTHO05D004804 6.0e-10 67.8 60 53.3
HPP92_015924 Vanilla planifolia HOM05D004137 ORTHO05D004804 6.0e-10 67.8 65 53.8
RcHm_v2.0_Chr5g0083831 Rosa chinensis HOM05D004137 ORTHO05D004804 7.8e-10 67.4 69 50.7
FAN16G1350 Fragaria x ananassa HOM05D004137 ORTHO05D004804 1.0e-09 67.0 69 50.7
FAN21G2465 Fragaria x ananassa HOM05D004137 ORTHO05D004804 1.0e-09 67.0 62 54.8
Lsat_1_v5_gn_1_68820 Lactuca sativa HOM05D004137 ORTHO05D004804 1.3e-09 66.6 63 50.8
CiPaw.13G177400 Carya illinoinensis HOM05D004137 ORTHO05D004804 2.3e-09 65.9 62 50.0
Migut.N00553 Erythranthe guttata HOM05D004137 ORTHO05D004804 2.3e-09 65.9 67 49.3
FvH4_3g45760 Fragaria vesca HOM05D004137 ORTHO05D004804 3.0e-09 65.5 60 55.0
FAN11G0915 Fragaria x ananassa HOM05D004137 ORTHO05D004804 3.0e-09 65.5 60 55.0
FAN25G2990 Fragaria x ananassa HOM05D004137 ORTHO05D004804 3.0e-09 65.5 69 50.7
Medtr7g085660 Medicago truncatula HOM05D004137 ORTHO05D004804 3.0e-09 65.5 65 53.8
ClCG02G024390 Citrullus lanatus HOM05D004137 ORTHO05D004804 3.9e-09 65.1 60 53.3
Ciclev10017215m.g Citrus clementina HOM05D004137 ORTHO05D004804 5.1e-09 64.7 65 53.8
BcaC05g29894 Brassica carinata HOM05D004137 ORTHO05D004804 6.6e-09 64.3 59 52.5
BolC5t34968H Brassica oleracea HOM05D004137 ORTHO05D004804 6.6e-09 64.3 59 52.5
ECA248G0157 Erigeron canadensis HOM05D004137 ORTHO05D004804 8.7e-09 63.9 63 47.6
BcaC05g30244 Brassica carinata HOM05D004137 ORTHO05D004804 1.1e-08 63.5 59 52.5
BcaC05g30291 Brassica carinata HOM05D004137 ORTHO05D004804 1.1e-08 63.5 59 52.5
A05p43490 Brassica napus HOM05D004137 ORTHO05D004804 1.1e-08 63.5 59 52.5
BraA05t23089Z Brassica rapa HOM05D004137 ORTHO05D004804 1.1e-08 63.5 59 52.5
Lj1g0005734 Lotus japonicus HOM05D004137 ORTHO05D004804 1.9e-08 62.8 54 55.6
Carub.0003s0313 Capsella rubella HOM05D004137 ORTHO05D004804 2.5e-08 62.4 59 52.5
Hma1.2p1_0241F.1_g100550 Hydrangea macrophylla HOM05D004137 ORTHO05D004804 3.3e-08 62.0 68 47.1
Lsat_1_v5_gn_2_50221 Lactuca sativa HOM05D004137 ORTHO05D004804 3.3e-08 62.0 63 46.0
HanXRQChr01g0021421 Helianthus annuus HOM05D004137 ORTHO05D004804 5.6e-08 61.2 63 44.4
Peaxi162Scf00003g04814 Petunia axillaris HOM05D004137 ORTHO05D004804 5.6e-08 61.2 35 74.3
Sed0012847 Sechium edule HOM05D004137 ORTHO05D004804 9.6e-08 60.5 62 46.8
unitig_0.g1150 Utricularia gibba HOM05D004137 ORTHO05D004804 9.6e-08 60.5 66 45.5
Potri.003G221500 Populus trichocarpa HOM05D004137 ORTHO05D004804 2.1e-07 59.3 64 45.3
Atru.chr3.2107 Acer truncatum HOM05D004137 ORTHO05D004804 2.8e-07 58.9 64 45.3
Nitab4.5_0000528g0100 Nicotiana tabacum HOM05D004137 ORTHO05D004804 3.6e-07 58.5 65 40.0
Nitab4.5_0005935g0010 Nicotiana tabacum HOM05D004137 ORTHO05D004804 3.6e-07 58.5 65 40.0
Potri.001G003500 Populus trichocarpa HOM05D004137 ORTHO05D004804 3.6e-07 58.5 64 45.3
Psat7g063840 Pisum sativum HOM05D004137 ORTHO05D004804 4.8e-07 58.2 62 50.0
Solyc06g064610.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 4.8e-07 58.2 69 44.9
PGSC0003DMG400033149 Solanum tuberosum HOM05D004137 ORTHO05D004804 4.8e-07 58.2 69 44.9
Sopen06g023090 Solanum pennellii HOM05D004137 ORTHO05D004804 6.2e-07 57.8 69 44.9
VMungo1383G3601 Vigna mungo HOM05D001721 ORTHO05D001804 6.2e-07 57.8 48 56.2
Phvul.001G111100 Phaseolus vulgaris HOM05D004137 ORTHO05D004804 1.1e-06 57.0 48 54.2
QL04p040762 Quercus lobata HOM05D004137 ORTHO05D004804 1.1e-06 57.0 51 51.0
Eucgr.B03601 Eucalyptus grandis HOM05D004137 ORTHO05D004804 1.4e-06 56.6 64 45.3
HanXRQChr02g0057501 Helianthus annuus HOM05D004137 ORTHO05D004804 1.4e-06 56.6 63 39.7
Manes.15G109500 Manihot esculenta HOM05D004137 ORTHO05D004804 1.4e-06 56.6 64 45.3
Glyma.19G112300 Glycine max HOM05D004137 ORTHO05D004804 1.8e-06 56.2 54 51.9
Medtr8g088460 Medicago truncatula HOM05D004137 ORTHO05D004804 1.8e-06 56.2 62 45.2
Manes.03G087303 Manihot esculenta HOM05D004137 ORTHO05D004804 2.4e-06 55.8 64 43.8
Cc01_g00130 Coffea canephora HOM05D004137 ORTHO05D004804 3.1e-06 55.5 71 40.8
SGA_v2.0_scaffold3G01677 Striga asiatica HOM05D004137 ORTHO05D004804 3.1e-06 55.5 69 43.5


User provided reference genes

Program Settings