Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g22830 Coffea canephora HOM05D006223 ORTHO05D009080 1.4e-103 379.8 212 100.0
GSVIVG01000109001 Vitis vinifera HOM05D006223 ORTHO05D009080 2.2e-56 223.0 205 61.5
Nitab4.5_0000142g0070 Nicotiana tabacum HOM05D006223 ORTHO05D009080 2.8e-56 222.6 211 59.2
Dinv04050 Davidia involucrata HOM05D006223 ORTHO05D009080 8.2e-56 221.1 210 57.1
TPR.G24252 Trifolium pratense HOM05D006223 ORTHO05D009080 1.5e-54 216.9 198 57.6
Lj7A96T45 Lonicera japonica HOM05D006223 ORTHO05D009080 2.0e-54 216.5 214 55.6
Eucgr.I00706 Eucalyptus grandis HOM05D006223 ORTHO05D009080 5.9e-54 214.9 221 55.7
Nitab4.5_0002119g0100 Nicotiana tabacum HOM05D006223 ORTHO05D009080 5.9e-54 214.9 202 58.9
Phvul.003G235100 Phaseolus vulgaris HOM05D006223 ORTHO05D009080 7.7e-54 214.5 211 57.3
Psat4g081960 Pisum sativum HOM05D006223 ORTHO05D009080 7.7e-54 214.5 198 57.1
CSS0009729 Camellia sinensis var. sinensis HOM05D006223 ORTHO05D009080 2.2e-53 213.0 195 61.5
GSVIVG01000118001 Vitis vinifera HOM05D006223 ORTHO05D009080 2.9e-53 212.6 202 57.9
Ca_22107_v3 Cicer arietinum L. HOM05D006223 ORTHO05D009080 5.0e-53 211.8 202 56.4
Ca_22114_v3 Cicer arietinum L. HOM05D006223 ORTHO05D009080 5.0e-53 211.8 202 56.4
Glyma.17G160900 Glycine max HOM05D006223 ORTHO05D009080 1.1e-52 210.7 204 57.4
DCAR_025799 Daucus carota HOM05D006223 ORTHO05D009080 3.2e-52 209.1 206 57.8
Lj4g0019733 Lotus japonicus HOM05D006223 ORTHO05D009080 3.2e-52 209.1 215 57.2
Medtr4g097030 Medicago truncatula HOM05D006223 ORTHO05D009080 3.2e-52 209.1 200 57.0
Haze_15285 Corylus avellana HOM05D006223 ORTHO05D009080 5.5e-52 208.4 220 59.5
Actinidia11984 Actinidia chinensis HOM05D006223 ORTHO05D009080 7.2e-52 208.0 218 54.6
VMungo0251G3324 Vigna mungo HOM05D006223 ORTHO05D009080 2.7e-51 206.1 205 61.0
MSTRG.23673 Avicennia marina HOM05D006223 ORTHO05D009080 3.6e-51 205.7 201 57.2
CAN.G1075.35 Capsicum annuum HOM05D006223 ORTHO05D009080 6.1e-51 204.9 211 55.0
Glyma.05G105500 Glycine max HOM05D006223 ORTHO05D009080 7.9e-51 204.5 209 56.0
TWI73G0604 Tripterygium wilfordii HOM05D006223 ORTHO05D009080 1.4e-50 203.8 206 57.3
Migut.H00350 Erythranthe guttata HOM05D006223 ORTHO05D009080 3.0e-50 202.6 201 55.2
PGSC0003DMG400021418 Solanum tuberosum HOM05D006223 ORTHO05D009080 3.0e-50 202.6 214 53.7
arahy.Tifrunner.gnm1.ann1.BP3FRD Arachis hypogaea HOM05D006223 ORTHO05D009080 3.9e-50 202.2 210 55.2
Sed0023944 Sechium edule HOM05D006223 ORTHO05D009080 5.1e-50 201.8 208 53.8
TAR625G1165 Trochodendron aralioides HOM05D006223 ORTHO05D009080 5.1e-50 201.8 210 56.2
Ciclev10026365m.g Citrus clementina HOM05D006223 ORTHO05D009080 4.3e-49 198.7 207 53.6
Rhsim10G0099700 Rhododendron simsii HOM05D006223 ORTHO05D009080 4.3e-49 198.7 223 52.5
Duzib147G0613 Durio zibethinus HOM05D006223 ORTHO05D009080 7.4e-49 198.0 225 49.8
Manes.12G113900 Manihot esculenta HOM05D006223 ORTHO05D009080 7.4e-49 198.0 209 59.8
Nn5g30588 Nelumbo nucifera HOM05D006223 ORTHO05D009080 7.4e-49 198.0 213 53.5
Hund16399 Selenicereus undatus HOM05D006223 ORTHO05D009080 7.4e-49 198.0 215 55.3
Solyc02g092390.3 Solanum lycopersicum HOM05D006223 ORTHO05D009080 9.7e-49 197.6 213 52.6
PSO170G6824 Papaver somniferum HOM05D006223 ORTHO05D009080 4.8e-48 195.3 202 55.0
TWI09G0585 Tripterygium wilfordii HOM05D006223 ORTHO05D009080 4.8e-48 195.3 206 54.9
Atru.chr3.1008 Acer truncatum HOM05D006223 ORTHO05D009080 6.3e-48 194.9 214 53.7
MELO3C020909.2 Cucumis melo HOM05D006223 ORTHO05D009080 6.3e-48 194.9 207 53.1
Aqoxy5G00869 Aquilegia oxysepala HOM05D006223 ORTHO05D009080 8.2e-48 194.5 205 56.6
Lalb_Chr05g0225861 Lupinus albus HOM05D006223 ORTHO05D009080 1.4e-47 193.7 207 54.6
RcHm_v2.0_Chr2g0108001 Rosa chinensis HOM05D006223 ORTHO05D009080 2.4e-47 193.0 202 56.4
Peaxi162Scf00548g00643 Petunia axillaris HOM05D006223 ORTHO05D009080 3.1e-47 192.6 208 54.3
ECA246G3554 Erigeron canadensis HOM05D006223 ORTHO05D009080 9.1e-47 191.0 200 59.5
Gohir.A11G215000 Gossypium hirsutum HOM05D006223 ORTHO05D009080 1.5e-46 190.3 221 48.9
Thecc.01G072400 Theobroma cacao HOM05D006223 ORTHO05D009080 1.5e-46 190.3 227 48.0
AUR62040240 Chenopodium quinoa HOM05D006223 ORTHO05D009080 4.5e-46 188.7 204 54.4
Sopen02g036940 Solanum pennellii HOM05D006223 ORTHO05D009080 4.5e-46 188.7 210 51.4
vmacro05408 Vaccinium macrocarpon HOM05D006223 ORTHO05D009080 5.9e-46 188.3 306 42.8
FAN28G1261 Fragaria x ananassa HOM05D006223 ORTHO05D009080 1.0e-45 187.6 200 55.5
HanXRQChr15g0472641 Helianthus annuus HOM05D006223 ORTHO05D009080 1.0e-45 187.6 202 54.5
FAN19G0818 Fragaria x ananassa HOM05D006223 ORTHO05D009080 1.3e-45 187.2 199 56.8
Lsat_1_v5_gn_3_86181 Lactuca sativa HOM05D006223 ORTHO05D009080 2.9e-45 186.0 212 50.9
PGR004G2352 Punica granatum HOM05D006223 ORTHO05D009080 3.8e-45 185.7 160 61.9
FAN26G2055 Fragaria x ananassa HOM05D006223 ORTHO05D009080 8.5e-45 184.5 200 55.5
CiPaw.01G004700 Carya illinoinensis HOM05D006223 ORTHO05D009080 1.9e-44 183.3 151 64.9
FvH4_1g17670 Fragaria vesca HOM05D006223 ORTHO05D009080 2.5e-44 183.0 200 55.5
CANSAT01G0277 Cannabis sativa HOM05D006223 ORTHO05D009080 3.2e-44 182.6 209 51.2
Cpa.g.sc6.19 Carica papaya HOM05D006223 ORTHO05D009080 3.2e-44 182.6 208 51.4
arahy.Tifrunner.gnm1.ann1.83HTFG Arachis hypogaea HOM05D006223 ORTHO05D009080 4.2e-44 182.2 239 47.7
ClCG02G012630 Citrullus lanatus HOM05D003401 ORTHO05D003906 4.2e-44 182.2 190 54.2
Gohir.D11G208400 Gossypium hirsutum HOM05D006223 ORTHO05D009080 7.2e-44 181.4 215 51.2
Gorai.007G223400 Gossypium raimondii HOM05D006223 ORTHO05D009080 9.4e-44 181.0 215 47.9
Cfa004130 Carpinus fangiana HOM05D006223 ORTHO05D009080 2.1e-43 179.9 138 67.4
Prupe.6G221000 Prunus persica HOM05D006223 ORTHO05D009080 4.7e-43 178.7 213 50.7
Sabra01G0139200 Salix brachista HOM05D006223 ORTHO05D009080 7.9e-43 177.9 212 48.1
AUR62004007 Chenopodium quinoa HOM05D006223 ORTHO05D009080 1.0e-42 177.6 200 52.5
Potri.001G172500 Populus trichocarpa HOM05D006223 ORTHO05D009080 2.0e-41 173.3 194 51.0
MD15G1297100 Malus domestica HOM05D006223 ORTHO05D009080 4.8e-40 168.7 148 63.5
HPP92_024913 Vanilla planifolia HOM05D006223 ORTHO05D009080 1.2e-38 164.1 207 51.2
Zm00001eb400790 Zea mays HOM05D006223 ORTHO05D009080 2.6e-38 162.9 202 49.0
Ah.03g140550 Amaranthus hybridus HOM05D006223 ORTHO05D009080 1.3e-37 160.6 157 56.1
ATR1153G042 Amborella trichopoda HOM05D006223 ORTHO05D009080 6.5e-37 158.3 210 48.6
CDE06G0771 Ceratophyllum demersum HOM05D006223 ORTHO05D009080 1.5e-36 157.1 200 45.0
Hma1.2p1_0852F.1_g228470 Hydrangea macrophylla HOM05D006223 ORTHO05D009080 1.9e-36 156.8 112 70.5
SGA_v2.0_scaffold72G24074 Striga asiatica HOM05D006223 ORTHO05D009080 9.4e-36 154.5 160 53.8
THA.LOC104827599 Tarenaya hassleriana HOM05D006223 ORTHO05D009080 1.2e-35 154.1 198 44.4
AT3G49890 Arabidopsis thaliana HOM05D006223 ORTHO05D009080 1.5e-33 147.1 200 42.0
AL5G29900 Arabidopsis lyrata HOM05D006223 ORTHO05D009080 2.8e-32 142.9 201 41.3
Aa31LG4G18340 Aethionema arabicum HOM05D006223 ORTHO05D009080 2.7e-30 136.3 201 40.3
Sp5g12220 Schrenkiella parvula HOM05D006223 ORTHO05D009080 3.8e-29 132.5 201 38.3
Os03g0201200 Oryza sativa ssp. japonica HOM05D006223 ORTHO05D009080 5.0e-29 132.1 202 41.6
A03p47580 Brassica napus HOM05D006223 ORTHO05D009080 6.5e-29 131.7 190 39.5
Thhalv10010709m.g Eutrema salsugineum HOM05D006223 ORTHO05D009080 1.9e-28 130.2 201 38.8
CARHR158970 Cardamine hirsuta HOM05D006223 ORTHO05D009080 2.5e-28 129.8 201 36.3
BraA03t13871Z Brassica rapa HOM05D006223 ORTHO05D009080 9.4e-28 127.9 191 39.3
CSS0032370 Camellia sinensis var. sinensis HOM05D006223 ORTHO05D009080 1.2e-27 127.5 88 78.4
C07p45560 Brassica napus HOM05D006223 ORTHO05D009080 1.0e-26 124.4 165 40.6
BolC7t45077H Brassica oleracea HOM05D006223 ORTHO05D009080 1.0e-26 124.4 165 40.6
Carub.0005s1625 Capsella rubella HOM05D006223 ORTHO05D009080 1.8e-26 123.6 200 36.0
SEGI_10369 Sequoiadendron giganteum HOM05D006223 ORTHO05D009080 5.2e-26 122.1 144 51.4
Sc16g0002890 Simmondsia chinensis HOM05D006223 ORTHO05D009080 1.2e-25 120.9 143 50.3
EL10Ac6g15621 Beta vulgaris HOM05D006223 ORTHO05D009080 5.7e-25 118.6 189 41.8
unitig_21.g20422 Utricularia gibba HOM05D005082 ORTHO05D006474 8.0e-19 98.2 186 39.8
SHI12778 Sapria himalayana HOM05D006223 ORTHO05D009080 1.7e-16 90.5 187 39.6
AagrBONN_evm.TU.Sc2ySwM_228.3102 Anthoceros agrestis HOM05D004796 ORTHO05D006527 9.2e-15 84.7 170 35.3
COL.COLO4_11574 Corchorus olitorius HOM05D006223 ORTHO05D009080 3.5e-14 82.8 130 40.0
C08p24920 Brassica napus HOM05D006223 ORTHO05D009080 6.6e-13 78.6 101 37.6
FAN23G0832 Fragaria x ananassa HOM05D006223 ORTHO05D009080 1.9e-12 77.0 119 44.5
Pp3c5_6560 Physcomitrium patens HOM05D006223 ORTHO05D009080 3.3e-12 76.3 225 32.0
HPP92_024909 Vanilla planifolia HOM05D006223 ORTHO05D009080 1.2e-11 74.3 200 35.0
BolC8t50110H Brassica oleracea HOM05D006223 ORTHO05D009080 1.6e-11 73.9 167 30.5
CSS0023916 Camellia sinensis var. sinensis HOM05D006223 ORTHO05D009080 1.8e-07 60.5 68 47.1
SMO145G0277 Selaginella moellendorffii HOM05D034328 ORTHO05D009080 9.2e-07 58.2 158 31.6
BcaB05g23172 Brassica carinata HOM05D006223 ORTHO05D009080 3.5e-06 56.2 131 29.8


User provided reference genes

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