Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g22780 Coffea canephora HOM05D007169 ORTHO05D007243 4.6e-107 391.3 212 100.0
Sopen03g031630 Solanum pennellii HOM05D007169 ORTHO05D007243 2.2e-48 196.4 138 71.7
Oeu006492.1 Olea europaea HOM05D007169 ORTHO05D007243 1.1e-47 194.1 146 67.8
Actinidia18344 Actinidia chinensis HOM05D007169 ORTHO05D007243 1.4e-47 193.7 154 66.2
Solyc03g112570.2 Solanum lycopersicum HOM05D007169 ORTHO05D007243 2.4e-47 193.0 138 71.0
PGSC0003DMG400018172 Solanum tuberosum HOM05D007169 ORTHO05D007243 3.1e-47 192.6 138 70.3
CSS0048648 Camellia sinensis var. sinensis HOM05D007169 ORTHO05D007243 6.9e-47 191.4 143 69.2
SalBow5G4624 Salvia bowleyana HOM05D007169 ORTHO05D007243 1.2e-46 190.7 147 66.0
Peaxi162Scf00089g01624 Petunia axillaris HOM05D007169 ORTHO05D007243 4.5e-46 188.7 150 63.3
SalBow5G3517 Salvia bowleyana HOM05D007169 ORTHO05D007243 5.9e-46 188.3 147 65.3
Potri.015G096000 Populus trichocarpa HOM05D007169 ORTHO05D007243 7.7e-46 188.0 141 68.1
MSTRG.11390 Avicennia marina HOM05D007169 ORTHO05D007243 2.5e-44 183.0 146 63.0
CAN.G338.2 Capsicum annuum HOM05D007169 ORTHO05D007243 9.4e-44 181.0 138 66.7
Sabra15G0116800 Salix brachista HOM05D007169 ORTHO05D007243 1.6e-43 180.3 140 67.1
SGA_v2.0_scaffold56G20032 Striga asiatica HOM05D007169 ORTHO05D007243 2.7e-43 179.5 146 63.0
Potri.012G097500 Populus trichocarpa HOM05D007169 ORTHO05D007243 3.6e-43 179.1 140 67.1
Migut.I00155 Erythranthe guttata HOM05D007169 ORTHO05D007243 4.7e-43 178.7 146 61.6
Gohir.D09G247400 Gossypium hirsutum HOM05D007169 ORTHO05D007243 1.1e-41 174.1 140 64.3
Gorai.006G271900 Gossypium raimondii HOM05D007169 ORTHO05D007243 1.1e-41 174.1 140 64.3
CANSAT80G1416 Cannabis sativa HOM05D007169 ORTHO05D007243 1.5e-41 173.7 158 62.7
Gohir.A09G246900 Gossypium hirsutum HOM05D007169 ORTHO05D007243 2.0e-41 173.3 139 64.7
Thecc.03G128900 Theobroma cacao HOM05D007169 ORTHO05D007243 3.3e-41 172.6 139 63.3
Manes.01G190300 Manihot esculenta HOM05D007169 ORTHO05D007243 1.3e-40 170.6 141 64.5
RhsimUnG0231000 Rhododendron simsii HOM05D007169 ORTHO05D007243 8.2e-40 167.9 143 58.7
Duzib068G0521 Durio zibethinus HOM05D007169 ORTHO05D007243 1.1e-39 167.5 140 60.7
Nitab4.5_0011992g0030 Nicotiana tabacum HOM05D007169 ORTHO05D007243 1.1e-39 167.5 155 59.4
ECA247G3219 Erigeron canadensis HOM05D007169 ORTHO05D007243 2.4e-39 166.4 134 58.2
Prupe.5G151300 Prunus persica HOM05D007169 ORTHO05D007243 5.3e-39 165.2 150 62.0
arahy.Tifrunner.gnm1.ann1.NVZ1RT Arachis hypogaea HOM05D007169 ORTHO05D007243 7.0e-39 164.9 151 58.9
arahy.Tifrunner.gnm1.ann1.ZT3MCZ Arachis hypogaea HOM05D007169 ORTHO05D007243 7.0e-39 164.9 151 58.9
Hma1.2p1_0014F.1_g009470 Hydrangea macrophylla HOM05D007169 ORTHO05D007243 7.0e-39 164.9 136 58.8
PGR044G0546 Punica granatum HOM05D007169 ORTHO05D007243 7.0e-39 164.9 144 58.3
CiPaw.12G042700 Carya illinoinensis HOM05D007169 ORTHO05D007243 9.1e-39 164.5 153 60.1
FvH4_5g08300 Fragaria vesca HOM05D007169 ORTHO05D007243 9.1e-39 164.5 134 63.4
TWI23G0849 Tripterygium wilfordii HOM05D007169 ORTHO05D007243 9.1e-39 164.5 152 61.2
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 9.1e-39 164.5 140 62.1
ClCG03G003730 Citrullus lanatus HOM05D007169 ORTHO05D007243 1.2e-38 164.1 144 61.8
MELO3C002358.2 Cucumis melo HOM05D007169 ORTHO05D007243 1.2e-38 164.1 144 63.2
Cpa.g.sc13.118 Carica papaya HOM05D007169 ORTHO05D007243 1.6e-38 163.7 145 61.4
CsaV3_1G009620 Cucumis sativus L. HOM05D007169 ORTHO05D007243 1.6e-38 163.7 144 62.5
Lsat_1_v5_gn_1_28980 Lactuca sativa HOM05D007169 ORTHO05D007243 2.0e-38 163.3 134 59.7
THA.LOC104803148 Tarenaya hassleriana HOM05D007169 ORTHO05D007243 2.0e-38 163.3 151 57.6
Eucgr.K02727 Eucalyptus grandis HOM05D007169 ORTHO05D007243 2.6e-38 162.9 140 62.9
FAN18G0310 Fragaria x ananassa HOM05D007169 ORTHO05D007243 3.5e-38 162.5 140 60.7
Phvul.009G166500 Phaseolus vulgaris HOM05D007169 ORTHO05D007243 3.5e-38 162.5 140 60.7
Glyma.06G170200 Glycine max HOM05D007169 ORTHO05D007243 7.7e-38 161.4 148 58.8
HanXRQChr02g0034741 Helianthus annuus HOM05D007169 ORTHO05D007243 7.7e-38 161.4 137 56.9
Lj1g0026378 Lotus japonicus HOM05D007169 ORTHO05D007243 1.0e-37 161.0 148 58.8
FAN04G2393 Fragaria x ananassa HOM05D007169 ORTHO05D007243 1.7e-37 160.2 140 60.7
QL10p002966 Quercus lobata HOM05D007169 ORTHO05D007243 2.2e-37 159.8 157 54.8
RcHm_v2.0_Chr7g0190221 Rosa chinensis HOM05D007169 ORTHO05D007243 2.9e-37 159.5 134 61.9
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 1.1e-36 157.5 147 57.1
Ca_16044_v3 Cicer arietinum L. HOM05D007169 ORTHO05D007243 1.5e-36 157.1 140 60.7
AUR62029615 Chenopodium quinoa HOM05D007169 ORTHO05D007243 2.5e-36 156.4 142 59.2
Gorai.004G276100 Gossypium raimondii HOM05D007169 ORTHO05D007243 3.2e-36 156.0 126 62.7
Medtr3g099350 Medicago truncatula HOM05D007169 ORTHO05D007243 3.2e-36 156.0 152 54.6
Psat5g051240 Pisum sativum HOM05D007169 ORTHO05D007243 3.2e-36 156.0 141 60.3
Atru.chr9.1127 Acer truncatum HOM05D007169 ORTHO05D007243 5.5e-36 155.2 154 57.1
Sed0023866 Sechium edule HOM05D007169 ORTHO05D007243 1.6e-35 153.7 140 56.4
TPR.G14220 Trifolium pratense HOM05D007169 ORTHO05D007243 4.7e-35 152.1 140 57.1
TAR374G1569 Trochodendron aralioides HOM05D007169 ORTHO05D007243 4.7e-35 152.1 159 54.1
Aa31LG3G6930 Aethionema arabicum HOM05D007169 ORTHO05D007243 1.0e-34 151.0 145 55.2
unitig_0.g2530 Utricularia gibba HOM05D007169 ORTHO05D007243 1.8e-34 150.2 152 55.3
Lalb_Chr08g0237141 Lupinus albus HOM05D007169 ORTHO05D007243 2.3e-34 149.8 152 53.3
EL10Ac5g11418 Beta vulgaris HOM05D007169 ORTHO05D007243 5.2e-34 148.7 138 58.0
Carub.0008s1052 Capsella rubella HOM05D007169 ORTHO05D007243 6.7e-34 148.3 144 53.5
Ah.02g111120 Amaranthus hybridus HOM05D007169 ORTHO05D007243 1.1e-33 147.5 142 57.0
Sc04g0000670 Simmondsia chinensis HOM05D007169 ORTHO05D007243 1.5e-33 147.1 139 58.3
BcaB05g24052 Brassica carinata HOM05D007169 ORTHO05D007243 2.0e-33 146.7 140 55.0
Thhalv10014456m.g Eutrema salsugineum HOM05D007169 ORTHO05D007243 2.0e-33 146.7 143 53.8
AL8G24630 Arabidopsis lyrata HOM05D007169 ORTHO05D007243 3.3e-33 146.0 144 54.2
BcaC03g14651 Brassica carinata HOM05D007169 ORTHO05D007243 5.7e-33 145.2 139 54.0
AT5G50410 Arabidopsis thaliana HOM05D007169 ORTHO05D007243 7.5e-33 144.8 142 53.5
Dinv23144 Davidia involucrata HOM05D007169 ORTHO05D007243 7.5e-33 144.8 102 71.6
A02p12790 Brassica napus HOM05D007169 ORTHO05D007243 1.7e-32 143.7 139 53.2
C02p20850 Brassica napus HOM05D007169 ORTHO05D007243 1.7e-32 143.7 139 53.2
BolC2t08225H Brassica oleracea HOM05D007169 ORTHO05D007243 1.7e-32 143.7 139 53.2
BraA02t06336Z Brassica rapa HOM05D007169 ORTHO05D007243 1.7e-32 143.7 139 53.2
Sp6g12560 Schrenkiella parvula HOM05D007169 ORTHO05D007243 2.2e-32 143.3 139 53.2
SpUn0015_0080 Schrenkiella parvula HOM05D007169 ORTHO05D007243 2.2e-32 143.3 139 53.2
SpUn0039_0020 Schrenkiella parvula HOM05D007169 ORTHO05D007243 2.2e-32 143.3 139 53.2
DCAR_021617 Daucus carota HOM05D007169 ORTHO05D007243 8.2e-32 141.4 139 51.8
Nn3g16473 Nelumbo nucifera HOM05D007169 ORTHO05D007243 8.2e-32 141.4 140 52.1
MD14G1157400 Malus domestica HOM05D007169 ORTHO05D007243 1.1e-31 141.0 182 46.7
MD06G1142100 Malus domestica HOM05D007169 ORTHO05D007243 1.8e-31 140.2 170 48.8
Sed0005692 Sechium edule HOM05D007169 ORTHO05D007243 2.4e-31 139.8 152 52.6
TAR371G0734 Trochodendron aralioides HOM05D007169 ORTHO05D007243 5.3e-31 138.7 146 52.1
vmacro07808 Vaccinium macrocarpon HOM05D007169 ORTHO05D007243 5.3e-31 138.7 191 43.5
Rhsim08G0190100 Rhododendron simsii HOM05D007169 ORTHO05D007243 1.2e-30 137.5 143 53.8
Lj5A96T48 Lonicera japonica HOM05D007169 ORTHO05D007243 2.0e-30 136.7 88 70.5
CANSAT80G0844 Cannabis sativa HOM05D007169 ORTHO05D007243 2.9e-29 132.9 81 79.0
Cfa018798 Carpinus fangiana HOM05D007169 ORTHO05D007243 5.0e-29 132.1 104 65.4
Gohir.D12G191801 Gossypium hirsutum HOM05D007169 ORTHO05D007243 8.5e-29 131.3 117 57.3
Haze_07134 Corylus avellana HOM05D007169 ORTHO05D007243 1.9e-28 130.2 104 64.4
Gorai.008G206100 Gossypium raimondii HOM05D007169 ORTHO05D007243 1.9e-28 130.2 117 57.3
PSO478G3704 Papaver somniferum HOM05D007169 ORTHO05D007243 1.6e-27 127.1 190 44.7
VMungo1309G2045 Vigna mungo HOM05D007169 ORTHO05D007243 2.1e-27 126.7 96 63.5
Gohir.D08G258666 Gossypium hirsutum HOM05D007169 ORTHO05D007243 1.0e-26 124.4 71 78.9
DCAR_016391 Daucus carota HOM05D007169 ORTHO05D007243 1.4e-26 124.0 104 57.7
TAR622G0369 Trochodendron aralioides HOM05D007169 ORTHO05D007243 5.2e-26 122.1 166 42.8
PSO017G4677 Papaver somniferum HOM05D007169 ORTHO05D007243 1.5e-25 120.6 193 44.0
Medtr2g045120 Medicago truncatula HOM05D007169 ORTHO05D007243 2.6e-25 119.8 96 59.4
Medtr2g445400 Medicago truncatula HOM05D007169 ORTHO05D007243 2.6e-25 119.8 96 59.4
Lalb_Chr23g0273701 Lupinus albus HOM05D007169 ORTHO05D007243 4.4e-25 119.0 123 50.4
Aqoxy3G00802 Aquilegia oxysepala HOM05D007169 ORTHO05D007243 1.1e-23 114.4 145 44.1
ATR0561G062 Amborella trichopoda HOM05D011398 ORTHO05D007243 2.4e-23 113.2 141 43.3
Hund26053 Selenicereus undatus HOM05D007169 ORTHO05D007243 3.1e-23 112.8 73 71.2
SEGI_24222 Sequoiadendron giganteum HOM05D007169 ORTHO05D007243 4.5e-22 109.0 126 41.3
Os08g0531200 Oryza sativa ssp. japonica HOM05D011398 ORTHO05D007243 5.9e-22 108.6 160 36.9
HPP92_011770 Vanilla planifolia HOM05D007169 ORTHO05D007243 2.2e-21 106.7 201 35.8
HPP92_011766 Vanilla planifolia HOM05D007169 ORTHO05D007243 5.5e-20 102.1 147 42.2
Zm00001eb175120 Zea mays HOM05D011398 ORTHO05D007243 8.8e-18 94.7 185 33.5
Sabra12G0071300 Salix brachista HOM05D000677 ORTHO05D000727 4.1e-15 85.9 97 50.5
FAN08G0105 Fragaria x ananassa HOM05D007169 ORTHO05D007243 5.4e-15 85.5 51 74.5
arahy.Tifrunner.gnm1.ann1.M1N3UH Arachis hypogaea HOM05D002218 ORTHO05D007243 9.2e-15 84.7 65 61.5
CARHR257950 Cardamine hirsuta HOM05D007169 ORTHO05D007243 3.5e-14 82.8 144 37.5
COL.COLO4_28120 Corchorus olitorius HOM05D007169 ORTHO05D007243 1.8e-10 70.5 140 37.1
CBR_g46730 Chara braunii HOM05D011398 ORTHO05D007243 4.0e-10 69.3 94 42.6
Mapoly0022s0039 Marchantia polymorpha HOM05D011398 ORTHO05D007243 4.0e-10 69.3 73 41.1
CBR_g30247 Chara braunii HOM05D011398 ORTHO05D007243 1.3e-08 64.3 111 33.3
AagrBONN_evm.TU.Sc2ySwM_344.3697 Anthoceros agrestis HOM05D011398 ORTHO05D007243 7.8e-06 55.1 68 36.8
Pp3c9_18230 Physcomitrium patens HOM05D011398 ORTHO05D007243 7.8e-06 55.1 76 34.2


User provided reference genes

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