Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g22130 Coffea canephora HOM05D000751 ORTHO05D005618 0.0e+00 1246.9 674 100.0
Cc06_g21130 Coffea canephora HOM05D000751 ORTHO05D005618 1.1e-284 983.0 549 90.7
Actinidia06357 Actinidia chinensis HOM05D000751 ORTHO05D005618 5.3e-266 921.0 682 68.3
CSS0048015 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D005618 1.7e-264 916.0 693 66.7
GSVIVG01010908001 Vitis vinifera HOM05D000751 ORTHO05D005618 9.3e-263 910.2 685 67.9
Hma1.2p1_0207F.1_g087810 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 7.9e-254 880.6 694 65.4
TAR636G3589 Trochodendron aralioides HOM05D000751 ORTHO05D005618 1.3e-253 879.8 714 64.0
Eucgr.A01411 Eucalyptus grandis HOM05D000751 ORTHO05D005618 3.6e-246 855.1 688 62.4
Nitab4.5_0000074g0030 Nicotiana tabacum HOM05D000751 ORTHO05D005618 4.1e-242 841.6 573 71.9
Aqoxy2G02196 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 2.6e-241 839.0 717 60.0
MSTRG.26530 Avicennia marina HOM05D000751 ORTHO05D005618 2.6e-241 839.0 692 62.6
Ciclev10030781m.g Citrus clementina HOM05D000751 ORTHO05D005618 2.6e-241 839.0 690 61.9
MELO3C017440.2 Cucumis melo HOM05D000751 ORTHO05D005618 3.4e-241 838.6 574 69.9
Nn8g40996 Nelumbo nucifera HOM05D000751 ORTHO05D005618 1.4e-239 833.2 582 70.4
Peaxi162Scf00324g00731 Petunia axillaris HOM05D000751 ORTHO05D005618 3.2e-239 832.0 573 71.2
CsaV3_1G031770 Cucumis sativus L. HOM05D000751 ORTHO05D005618 4.2e-239 831.6 574 69.5
Migut.L01901 Erythranthe guttata HOM05D000751 ORTHO05D005618 3.6e-238 828.6 572 69.6
Sed0012322 Sechium edule HOM05D000751 ORTHO05D005618 4.7e-238 828.2 576 68.9
CiPaw.14G110300 Carya illinoinensis HOM05D000751 ORTHO05D005618 1.4e-237 826.6 695 62.2
EL10Ac2g02594 Beta vulgaris HOM05D000751 ORTHO05D005618 3.9e-237 825.1 675 61.0
EL10As14g24084 Beta vulgaris HOM05D000751 ORTHO05D005618 8.8e-237 823.9 675 61.2
CANSAT11G2085 Cannabis sativa HOM05D000751 ORTHO05D005618 2.8e-235 818.9 586 67.7
Cfa016755 Carpinus fangiana HOM05D000751 ORTHO05D005618 4.1e-234 815.1 678 63.1
Lsat_1_v5_gn_7_56501 Lactuca sativa HOM05D000751 ORTHO05D005618 6.9e-234 814.3 680 60.7
ECA240G3678 Erigeron canadensis HOM05D000751 ORTHO05D005618 1.2e-233 813.5 694 62.4
Gorai.009G003500 Gossypium raimondii HOM05D000751 ORTHO05D005618 1.7e-232 809.7 576 68.9
Gohir.D05G003900 Gossypium hirsutum HOM05D000751 ORTHO05D005618 4.2e-231 805.1 576 68.9
Hund24686 Selenicereus undatus HOM05D000751 ORTHO05D005618 2.1e-230 802.7 714 58.4
Manes.17G002500 Manihot esculenta HOM05D000751 ORTHO05D005618 6.1e-230 801.2 575 66.8
Gohir.A05G003500 Gossypium hirsutum HOM05D000751 ORTHO05D005618 1.0e-229 800.4 576 68.2
Sc06g0007900 Simmondsia chinensis HOM05D000751 ORTHO05D005618 3.0e-229 798.9 543 72.7
Cpa.g.sc86.27 Carica papaya HOM05D000751 ORTHO05D005618 3.3e-228 795.4 576 67.5
Thecc.09G180200 Theobroma cacao HOM05D000751 ORTHO05D005618 4.4e-228 795.0 679 62.4
Nitab4.5_0008918g0010 Nicotiana tabacum HOM05D000751 ORTHO05D005618 9.7e-228 793.9 683 61.3
PSO478G0715 Papaver somniferum HOM05D000751 ORTHO05D005618 3.7e-227 792.0 678 58.8
Duzib168G1036 Durio zibethinus HOM05D000751 ORTHO05D005618 6.3e-227 791.2 679 62.2
Potri.003G010000 Populus trichocarpa HOM05D000751 ORTHO05D005618 6.3e-227 791.2 577 65.9
TWI38G2172 Tripterygium wilfordii HOM05D000751 ORTHO05D005618 8.2e-227 790.8 696 60.9
SGA_v2.0_scaffold595G53113 Striga asiatica HOM05D000751 ORTHO05D005618 9.1e-226 787.3 576 65.3
Prupe.1G079600 Prunus persica HOM05D000751 ORTHO05D005618 2.6e-225 785.8 696 60.3
RcHm_v2.0_Chr4g0400251 Rosa chinensis HOM05D000751 ORTHO05D005618 2.6e-225 785.8 578 65.7
MBI16_g18209_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 5.9e-225 784.6 578 68.2
Aa31LG7G2520 Aethionema arabicum HOM05D000751 ORTHO05D005618 1.3e-224 783.5 689 59.9
DCAR_007397 Daucus carota HOM05D000751 ORTHO05D005618 1.7e-224 783.1 678 60.9
PSO017G1776 Papaver somniferum HOM05D000751 ORTHO05D005618 2.2e-224 782.7 578 65.1
vmacro08789 Vaccinium macrocarpon HOM05D000751 ORTHO05D005618 1.4e-221 773.5 976 48.1
FvH4_4g07640 Fragaria vesca HOM05D000751 ORTHO05D005618 6.7e-221 771.2 578 64.9
Atru.chr11.2504 Acer truncatum HOM05D000751 ORTHO05D005618 2.8e-219 765.8 696 59.6
THA.LOC104813512 Tarenaya hassleriana HOM05D000751 ORTHO05D005618 1.8e-218 763.1 700 58.7
Carub.0001s1742 Capsella rubella HOM05D000751 ORTHO05D005618 7.0e-218 761.1 693 59.3
CARHR018290 Cardamine hirsuta HOM05D000751 ORTHO05D005618 1.2e-217 760.4 576 64.4
A08p30790 Brassica napus HOM05D000751 ORTHO05D005618 2.7e-217 759.2 689 58.6
AT1G17690 Arabidopsis thaliana HOM05D000751 ORTHO05D005618 5.9e-217 758.1 583 64.7
HanXRQChr03g0068331 Helianthus annuus HOM05D000751 ORTHO05D005618 5.9e-217 758.1 684 62.1
Lalb_Chr02g0148081 Lupinus albus HOM05D000751 ORTHO05D005618 3.8e-216 755.4 568 65.3
Thhalv10006892m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 6.5e-216 754.6 697 57.1
AL1G30040 Arabidopsis lyrata HOM05D000751 ORTHO05D005618 4.2e-215 751.9 583 64.0
Glyma.09G057700 Glycine max HOM05D000751 ORTHO05D005618 5.5e-215 751.5 571 64.3
VMungo1309G0231 Vigna mungo HOM05D000751 ORTHO05D005618 1.2e-214 750.4 571 65.0
BraA08t35010Z Brassica rapa HOM05D000751 ORTHO05D005618 1.0e-213 747.3 581 62.8
Phvul.009G238100 Phaseolus vulgaris HOM05D000751 ORTHO05D005618 5.2e-213 745.0 567 64.2
C08p18130 Brassica napus HOM05D000751 ORTHO05D005618 9.8e-212 740.7 695 56.0
SalBow1G4534 Salvia bowleyana HOM05D000751 ORTHO05D005618 2.2e-211 739.6 573 62.5
Lj6g0015551 Lotus japonicus HOM05D000751 ORTHO05D005618 6.3e-211 738.0 632 59.7
BolC8t49447H Brassica oleracea HOM05D000751 ORTHO05D005618 2.4e-210 736.1 699 56.4
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 7.0e-210 734.6 568 63.2
TPR.G9024 Trifolium pratense HOM05D000751 ORTHO05D005618 7.0e-210 734.6 575 62.4
SalBow6G0847 Salvia bowleyana HOM05D000751 ORTHO05D005618 3.5e-209 732.3 571 62.0
Sopen07g005110 Solanum pennellii HOM05D000751 ORTHO05D005618 1.1e-207 727.2 616 60.7
Cc10_g11360 Coffea canephora HOM05D000751 ORTHO05D005618 3.3e-207 725.7 605 66.4
FAN07G1720 Fragaria x ananassa HOM05D000751 ORTHO05D005618 1.2e-206 723.8 626 59.1
ATR0626G151 Amborella trichopoda HOM05D000751 ORTHO05D005618 8.0e-206 721.1 656 56.2
ClCG06G013510 Citrullus lanatus HOM05D000751 ORTHO05D005618 6.8e-205 718.0 729 52.8
Rhsim01G0197100 Rhododendron simsii HOM05D000751 ORTHO05D005618 1.8e-202 709.9 745 53.6
unitig_8.g3549 Utricularia gibba HOM05D000751 ORTHO05D005618 9.2e-202 707.6 681 53.9
Thhalv10023137m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 1.0e-200 704.1 572 60.7
FAN17G2112 Fragaria x ananassa HOM05D000751 ORTHO05D005618 4.7e-198 695.3 603 59.5
arahy.Tifrunner.gnm1.ann1.QPM7FK Arachis hypogaea HOM05D000751 ORTHO05D005618 6.1e-198 694.9 670 54.2
Medtr2g036890 Medicago truncatula HOM05D000751 ORTHO05D005618 5.2e-197 691.8 578 58.8
Medtr2g012650 Medicago truncatula HOM05D000751 ORTHO05D005618 9.2e-194 681.0 575 58.6
FAN12G3496 Fragaria x ananassa HOM05D000751 ORTHO05D005618 8.6e-192 674.5 577 59.3
CDE06G1960 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 3.6e-190 669.1 664 54.1
SalBow6G2294 Salvia bowleyana HOM05D000751 ORTHO05D005618 3.1e-189 666.0 632 54.7
AUR62014975 Chenopodium quinoa HOM05D000751 ORTHO05D005618 3.5e-185 652.5 594 58.1
Oeu047314.3 Olea europaea HOM05D000751 ORTHO05D005618 1.3e-184 650.6 712 49.6
Aqoxy2G02322 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 9.9e-180 634.4 664 54.1
Zm00001eb406370 Zea mays HOM05D000751 ORTHO05D005618 7.1e-178 628.2 573 54.8
Carub.0003s1065 Capsella rubella HOM05D000751 ORTHO05D005618 1.6e-177 627.1 682 49.9
Os05g0295100 Oryza sativa ssp. japonica HOM05D000751 ORTHO05D005618 1.3e-176 624.0 579 54.1
arahy.Tifrunner.gnm1.ann1.4Y102Q Arachis hypogaea HOM05D000751 ORTHO05D005618 3.3e-175 619.4 569 56.6
DCAR_007396 Daucus carota HOM05D000751 ORTHO05D005618 5.6e-167 592.0 520 58.5
AagrBONN_evm.TU.Sc2ySwM_369.592 Anthoceros agrestis HOM05D000751 ORTHO05D005618 2.1e-166 590.1 574 52.1
Mapoly0074s0025 Marchantia polymorpha HOM05D000751 ORTHO05D005618 3.1e-165 586.3 575 49.7
Pp3c10_17670 Physcomitrium patens HOM05D000751 ORTHO05D005618 1.9e-162 577.0 583 52.0
SMO296G0020 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 2.7e-161 573.2 564 51.1
CDE02G3188 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 1.5e-156 557.4 404 68.1
MD13G1251200 Malus domestica HOM05D000751 ORTHO05D005618 1.9e-151 540.4 378 69.0
MD03G1036400 Malus domestica HOM05D000751 ORTHO05D005618 3.4e-148 529.6 517 55.5
CBR_g38171 Chara braunii HOM05D000751 ORTHO05D005618 4.0e-141 506.1 613 44.4
SalBow6G6994 Salvia bowleyana HOM05D000751 ORTHO05D005618 5.3e-141 505.8 491 52.1
Glyma.15G163800 Glycine max HOM05D000751 ORTHO05D005618 3.0e-136 490.0 398 62.3
Aqoxy1G02673 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.4e-130 471.1 490 51.8
CAN.G193.38 Capsicum annuum HOM05D000751 ORTHO05D005618 5.5e-130 469.2 348 65.5
CAN.G266.4 Capsicum annuum HOM05D000751 ORTHO05D005618 2.3e-128 463.8 309 72.2
SEGI_35111 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 1.7e-123 447.6 293 71.3
AUR62030665 Chenopodium quinoa HOM05D000751 ORTHO05D005618 3.9e-120 436.4 323 65.0
HPP92_028564 Vanilla planifolia HOM05D000751 ORTHO05D005618 1.9e-114 417.5 329 62.0
Cre04.g218300 Chlamydomonas reinhardtii HOM05D000751 ORTHO05D005618 3.0e-104 383.6 437 46.0
SMO174G0270 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 3.4e-103 380.2 491 42.4
Dinv26447 Davidia involucrata HOM05D000751 ORTHO05D005618 3.5e-100 370.2 378 55.0
BcaB05g23995 Brassica carinata HOM05D000751 ORTHO05D005618 8.5e-99 365.5 468 43.4
MCO16G456 Micromonas commoda HOM05D000751 ORTHO05D005618 3.4e-95 353.6 518 38.6
Hma1.2p1_0909F.1_g235820 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 2.2e-94 350.9 486 44.9
BolC2t08163H Brassica oleracea HOM05D000751 ORTHO05D005618 5.9e-92 342.8 349 51.6
Cfa022413 Carpinus fangiana HOM05D000751 ORTHO05D005618 1.6e-81 308.1 461 39.0
Psat4g182200 Pisum sativum HOM05D000751 ORTHO05D005618 3.7e-78 297.0 300 54.3
Cc06_g21120 Coffea canephora HOM05D000751 ORTHO05D005618 7.8e-76 289.3 156 92.9
COL.COLO4_25458 Corchorus olitorius HOM05D000751 ORTHO05D005618 1.9e-74 284.6 425 41.4
PRCOL_00003641 Prasinoderma coloniale HOM05D000751 ORTHO05D005618 2.5e-74 284.3 593 31.7
Ca_05496_v3 Cicer arietinum L. HOM05D000751 ORTHO05D005618 1.4e-72 278.5 252 54.0
HPP92_003076 Vanilla planifolia HOM05D000751 ORTHO05D005618 7.1e-69 266.2 207 64.3
Nn2g10858 Nelumbo nucifera HOM05D000751 ORTHO05D005618 7.3e-66 256.1 154 79.9
SEGI_01124 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 6.0e-60 236.5 150 74.7
Medtr8g466490 Medicago truncatula HOM05D000751 ORTHO05D005618 1.0e-59 235.7 287 46.3
arahy.Tifrunner.gnm1.ann1.EK4LKE Arachis hypogaea HOM05D000751 ORTHO05D005618 4.7e-57 226.9 147 74.1
HPP92_028565 Vanilla planifolia HOM05D000751 ORTHO05D005618 1.5e-55 221.9 135 77.0
Solyc07g009350.4 Solanum lycopersicum HOM05D000751 ORTHO05D005618 9.9e-55 219.2 284 45.4
AUR62024882 Chenopodium quinoa HOM05D000751 ORTHO05D005618 7.1e-53 213.0 174 54.6
Psat4g047120 Pisum sativum HOM05D000751 ORTHO05D005618 1.3e-51 208.8 196 56.6
SEGI_01043 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 2.8e-49 201.1 195 54.9
CAN.G266.3 Capsicum annuum HOM05D000751 ORTHO05D005618 5.8e-47 193.4 210 48.6
BcaC03g14585 Brassica carinata HOM05D000751 ORTHO05D005618 2.2e-46 191.4 280 42.5
Haze_19748 Corylus avellana HOM05D000751 ORTHO05D005618 4.9e-46 190.3 280 43.2
Medtr4g415340 Medicago truncatula HOM05D000751 ORTHO05D005618 3.2e-45 187.6 182 52.2
Medtr8g466500 Medicago truncatula HOM05D000751 ORTHO05D005618 4.3e-42 177.2 223 43.9
COL.COLO4_25459 Corchorus olitorius HOM05D000751 ORTHO05D005618 1.4e-37 162.2 118 71.2
Nn2g10857 Nelumbo nucifera HOM05D000751 ORTHO05D005618 1.1e-34 152.5 84 85.7
Aqoxy3G01439 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 2.5e-34 151.4 92 79.3
Sabra15G0073700 Salix brachista HOM05D000810 ORTHO05D005618 2.4e-32 144.8 282 35.5
MD13G1251100 Malus domestica HOM05D000751 ORTHO05D005618 5.8e-31 140.2 295 42.4
SEGI_01614 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 7.1e-29 133.3 90 66.7
Psat4g182280 Pisum sativum HOM05D000751 ORTHO05D005618 9.3e-29 132.9 83 73.5
CAN.G101.3 Capsicum annuum HOM05D000751 ORTHO05D005618 8.7e-27 126.3 105 62.9
Aqoxy2G02180 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 4.5e-23 114.0 93 62.4
Sopen07g005100 Solanum pennellii HOM05D000002 ORTHO05D000001 5.8e-23 113.6 70 78.6
Gorai.003G081200 Gossypium raimondii HOM05D000751 ORTHO05D005618 2.9e-22 111.3 70 77.1
Sc06g0007910 Simmondsia chinensis HOM05D000751 ORTHO05D005618 1.1e-21 109.4 200 31.5
Hma1.2p1_2432F.1_g322060 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 3.2e-21 107.8 85 63.5
Hma1.2p1_2432F.1_g322050 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 7.1e-21 106.7 209 34.4
Aqoxy125s004 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 4.6e-20 104.0 100 54.0
Hma1.2p1_2432F.1_g322070 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 5.9e-15 87.0 92 53.3
HPP92_003077 Vanilla planifolia HOM05D000751 ORTHO05D005618 1.0e-14 86.3 80 55.0
Aqoxy1G02674 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 5.1e-11 73.9 97 44.3
MD13G1245100 Malus domestica HOM05D000751 ORTHO05D005618 4.1e-08 64.3 150 32.7
Rhsim03G0091700 Rhododendron simsii HOM05D000751 ORTHO05D340051 5.0e-06 57.4 104 33.7


User provided reference genes

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