Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g22060 Coffea canephora HOM05D004743 ORTHO05D005698 7.0e-84 313.9 159 100.0
Cc00_g14600 Coffea canephora HOM05D004743 ORTHO05D005698 2.0e-83 312.4 159 99.4
Dinv14277 Davidia involucrata HOM05D004743 ORTHO05D005698 4.5e-75 284.6 158 86.7
Ciclev10012973m.g Citrus clementina HOM05D004743 ORTHO05D005698 2.9e-74 282.0 158 86.1
Rhsim03G0009100 Rhododendron simsii HOM05D004743 ORTHO05D005698 1.9e-73 279.3 154 89.0
CSS0027207 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 5.5e-73 277.7 158 85.4
CSS0048559 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 5.5e-73 277.7 158 85.4
vmacro07935 Vaccinium macrocarpon HOM05D004743 ORTHO05D005698 1.2e-72 276.6 154 87.7
Sc13g0002130 Simmondsia chinensis HOM05D004743 ORTHO05D005698 1.6e-72 276.2 156 85.3
MD14G1060700 Malus domestica HOM05D004743 ORTHO05D005698 2.1e-72 275.8 158 84.2
Actinidia09383 Actinidia chinensis HOM05D000570 ORTHO05D005344 4.7e-72 274.6 158 84.2
MD12G1061000 Malus domestica HOM05D004743 ORTHO05D005698 4.7e-72 274.6 158 82.9
Prupe.7G073800 Prunus persica HOM05D004743 ORTHO05D005698 4.7e-72 274.6 158 84.2
Thecc.05G168500 Theobroma cacao HOM05D004743 ORTHO05D005698 6.1e-72 274.2 158 82.3
TAR633G2476 Trochodendron aralioides HOM05D004743 ORTHO05D005698 6.1e-72 274.2 159 83.6
CDE07G0719 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 8.0e-72 273.9 157 85.4
Hma1.2p1_0005F.1_g004310 Hydrangea macrophylla HOM05D004743 ORTHO05D005698 8.0e-72 273.9 158 84.8
Cpa.g.sc85.89 Carica papaya HOM05D004743 ORTHO05D005698 1.8e-71 272.7 158 81.6
Duzib106G0699 Durio zibethinus HOM05D004743 ORTHO05D005698 2.3e-71 272.3 154 84.4
RcHm_v2.0_Chr3g0480261 Rosa chinensis HOM05D004743 ORTHO05D005698 2.3e-71 272.3 158 83.5
FvH4_6g22680 Fragaria vesca HOM05D004743 ORTHO05D005698 5.2e-71 271.2 158 81.6
FAN02G0944 Fragaria x ananassa HOM05D004743 ORTHO05D005698 5.2e-71 271.2 158 81.6
FAN05G2002 Fragaria x ananassa HOM05D004743 ORTHO05D005698 5.2e-71 271.2 158 81.6
FAN09G0554 Fragaria x ananassa HOM05D004743 ORTHO05D005698 5.2e-71 271.2 158 81.6
FAN14G2026 Fragaria x ananassa HOM05D004743 ORTHO05D005698 5.2e-71 271.2 158 81.6
FAN14G4474 Fragaria x ananassa HOM05D004743 ORTHO05D005698 5.2e-71 271.2 158 81.6
COL.COLO4_36134 Corchorus olitorius HOM05D004743 ORTHO05D005698 6.8e-71 270.8 158 81.6
Lju124A30G9 Lonicera japonica HOM05D004743 ORTHO05D005698 6.8e-71 270.8 159 83.0
Haze_19962 Corylus avellana HOM05D004743 ORTHO05D005698 8.8e-71 270.4 159 82.4
TAR623G0239 Trochodendron aralioides HOM05D004743 ORTHO05D005698 8.8e-71 270.4 154 84.4
Hund19191 Selenicereus undatus HOM05D004743 ORTHO05D005698 1.5e-70 269.6 157 82.2
Potri.006G059300 Populus trichocarpa HOM05D004743 ORTHO05D005698 2.6e-70 268.9 158 79.1
Gohir.A09G126700 Gossypium hirsutum HOM05D004743 ORTHO05D005698 3.4e-70 268.5 159 81.1
DCAR_013558 Daucus carota HOM05D004743 ORTHO05D005698 5.7e-70 267.7 158 82.3
Sed0004669 Sechium edule HOM05D004743 ORTHO05D005698 5.7e-70 267.7 159 81.1
TAR633G1605 Trochodendron aralioides HOM05D004743 ORTHO05D005698 5.7e-70 267.7 159 81.8
Gorai.006G141500 Gossypium raimondii HOM05D004743 ORTHO05D005698 7.5e-70 267.3 154 82.5
Manes.08G045000 Manihot esculenta HOM05D004743 ORTHO05D005698 7.5e-70 267.3 158 79.7
CANSAT64G2667 Cannabis sativa HOM05D004743 ORTHO05D005698 9.8e-70 266.9 158 81.0
CiPaw.10G028000 Carya illinoinensis HOM05D004743 ORTHO05D005698 1.3e-69 266.5 159 81.1
Gohir.A01G192000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 1.7e-69 266.2 154 81.2
Sed0015240 Sechium edule HOM05D004743 ORTHO05D005698 1.7e-69 266.2 159 80.5
MELO3C009644.2 Cucumis melo HOM05D004743 ORTHO05D005698 2.2e-69 265.8 159 82.4
Gohir.D01G178000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 2.2e-69 265.8 153 81.7
Gorai.002G225100 Gossypium raimondii HOM05D004743 ORTHO05D005698 2.2e-69 265.8 153 81.7
Manes.09G032100 Manihot esculenta HOM05D004743 ORTHO05D005698 2.2e-69 265.8 158 79.1
PGR142G2650 Punica granatum HOM05D004743 ORTHO05D005698 2.8e-69 265.4 159 78.0
MSTRG.19893 Avicennia marina HOM05D004743 ORTHO05D005698 6.3e-69 264.2 159 81.1
CsaV3_3G039010 Cucumis sativus L. HOM05D004743 ORTHO05D005698 6.3e-69 264.2 159 81.8
Oeu033746.1 Olea europaea HOM05D004743 ORTHO05D005698 6.3e-69 264.2 158 79.1
Gohir.D09G123248 Gossypium hirsutum HOM05D004743 ORTHO05D005698 1.8e-68 262.7 154 81.2
HanXRQChr15g0491311 Helianthus annuus HOM05D004743 ORTHO05D005698 1.8e-68 262.7 157 80.3
Nitab4.5_0001538g0070 Nicotiana tabacum HOM05D004743 ORTHO05D005698 2.4e-68 262.3 158 81.6
EL10Ac3g06947 Beta vulgaris HOM05D004743 ORTHO05D005698 3.1e-68 261.9 154 80.5
HanXRQChr10g0295691 Helianthus annuus HOM05D004743 ORTHO05D005698 4.1e-68 261.5 157 80.3
Nitab4.5_0000991g0030 Nicotiana tabacum HOM05D004743 ORTHO05D005698 4.1e-68 261.5 158 81.6
SGA_v2.0_scaffold69G23079 Striga asiatica HOM05D004743 ORTHO05D005698 4.1e-68 261.5 159 77.4
THA.LOC104824464 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 5.4e-68 261.2 158 77.2
CAN.G1161.21 Capsicum annuum HOM05D004743 ORTHO05D005698 7.0e-68 260.8 156 82.1
VMungo1383G0120 Vigna mungo HOM05D004743 ORTHO05D005698 1.6e-67 259.6 158 79.7
MBI04_g27127_MAGBIO Magnolia biondii HOM05D004743 ORTHO05D005698 2.0e-67 259.2 156 80.8
Sopen10g029310 Solanum pennellii HOM05D004743 ORTHO05D005698 2.0e-67 259.2 158 81.0
PGSC0003DMG400011432 Solanum tuberosum HOM05D004743 ORTHO05D005698 2.0e-67 259.2 158 81.0
ECA247G0571 Erigeron canadensis HOM05D004743 ORTHO05D005698 3.5e-67 258.5 159 78.6
Peaxi162Scf00003g04210 Petunia axillaris HOM05D004743 ORTHO05D005698 5.9e-67 257.7 158 79.7
Solyc10g078690.3 Solanum lycopersicum HOM05D004743 ORTHO05D005698 5.9e-67 257.7 158 81.0
GSVIVG01033524001 Vitis vinifera HOM05D004743 ORTHO05D005698 7.7e-67 257.3 159 78.0
Lsat_1_v5_gn_9_28001 Lactuca sativa HOM05D004743 ORTHO05D005698 1.0e-66 256.9 159 78.6
Thhalv10017352m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 1.3e-66 256.5 158 77.2
AUR62024326 Chenopodium quinoa HOM05D004743 ORTHO05D005698 2.2e-66 255.8 154 77.9
Aa31LG1G24060 Aethionema arabicum HOM05D004743 ORTHO05D005698 2.9e-66 255.4 158 77.8
CARHR137250 Cardamine hirsuta HOM05D004743 ORTHO05D005698 2.9e-66 255.4 158 76.6
PSO339G6088 Papaver somniferum HOM05D004743 ORTHO05D005698 2.9e-66 255.4 156 79.5
PSO384G3106 Papaver somniferum HOM05D004743 ORTHO05D005698 2.9e-66 255.4 156 79.5
Aqoxy2G00062 Aquilegia oxysepala HOM05D004743 ORTHO05D005698 6.5e-66 254.2 157 77.7
AT2G42210 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 6.5e-66 254.2 158 76.6
Phvul.001G140800 Phaseolus vulgaris HOM05D004743 ORTHO05D005698 8.5e-66 253.8 158 78.5
Sp4g24390 Schrenkiella parvula HOM05D004743 ORTHO05D005698 8.5e-66 253.8 158 75.3
Thhalv10006285m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 1.1e-65 253.4 158 75.9
Sp5g04820 Schrenkiella parvula HOM05D004743 ORTHO05D005698 1.1e-65 253.4 158 75.9
Migut.J01816 Erythranthe guttata HOM05D004743 ORTHO05D005698 1.5e-65 253.1 159 75.5
AUR62012065 Chenopodium quinoa HOM05D004743 ORTHO05D005698 1.9e-65 252.7 154 77.3
AL4G40570 Arabidopsis lyrata HOM05D004743 ORTHO05D005698 4.2e-65 251.5 158 75.3
Glyma.03G142900 Glycine max HOM05D004743 ORTHO05D005698 7.2e-65 250.8 158 77.2
arahy.Tifrunner.gnm1.ann1.2GY28N Arachis hypogaea HOM05D000570 ORTHO05D005344 9.4e-65 250.4 158 77.2
arahy.Tifrunner.gnm1.ann1.CB7VX4 Arachis hypogaea HOM05D004743 ORTHO05D005344 9.4e-65 250.4 158 77.2
Glyma.19G145900 Glycine max HOM05D004743 ORTHO05D005698 9.4e-65 250.4 158 77.2
ATR0605G135 Amborella trichopoda HOM05D004743 ORTHO05D005698 1.6e-64 249.6 159 73.6
Duzib128G1008 Durio zibethinus HOM05D004743 ORTHO05D005698 2.1e-64 249.2 154 77.9
CDE04G2796 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 2.7e-64 248.8 141 86.5
Ah.13g076070 Amaranthus hybridus HOM05D004743 ORTHO05D005698 1.0e-63 246.9 154 77.9
BcaC02g12469 Brassica carinata HOM05D004743 ORTHO05D005698 1.0e-63 246.9 159 74.2
BcaNung04402 Brassica carinata HOM05D004743 ORTHO05D005698 1.0e-63 246.9 159 74.2
A05p02780 Brassica napus HOM05D004743 ORTHO05D005698 1.0e-63 246.9 159 74.2
C04p03370 Brassica napus HOM05D004743 ORTHO05D005698 1.0e-63 246.9 159 74.2
Aa31LG10G12610 Aethionema arabicum HOM05D004743 ORTHO05D005698 1.8e-63 246.1 158 74.7
BcaB06g29229 Brassica carinata HOM05D004743 ORTHO05D005698 1.8e-63 246.1 159 74.2
Lalb_Chr04g0259631 Lupinus albus HOM05D004743 ORTHO05D005698 1.8e-63 246.1 158 74.1
Carub.0004s2455 Capsella rubella HOM05D004743 ORTHO05D005698 2.3e-63 245.7 158 73.4
BraA05t19270Z Brassica rapa HOM05D004743 ORTHO05D005698 3.0e-63 245.4 159 73.6
Lj1g0027895 Lotus japonicus HOM05D004743 ORTHO05D005344 4.0e-63 245.0 155 76.8
BcaC02g07257 Brassica carinata HOM05D004743 ORTHO05D005698 8.8e-63 243.8 159 73.6
C04p69570 Brassica napus HOM05D004743 ORTHO05D005698 8.8e-63 243.8 159 73.6
BolC4t28455H Brassica oleracea HOM05D004743 ORTHO05D005698 8.8e-63 243.8 159 73.6
BraA04t18662Z Brassica rapa HOM05D004743 ORTHO05D005698 1.5e-62 243.0 156 73.1
A04p32050 Brassica napus HOM05D004743 ORTHO05D005698 3.4e-62 241.9 156 72.4
Ca_08506_v3 Cicer arietinum L. HOM05D004743 ORTHO05D005698 3.4e-62 241.9 156 75.6
Psat3g069720 Pisum sativum HOM05D004743 ORTHO05D005698 7.5e-62 240.7 158 74.1
Sabra06G0042700 Salix brachista HOM05D004743 ORTHO05D005698 9.8e-62 240.4 207 59.4
unitig_749.g14140 Utricularia gibba HOM05D004743 ORTHO05D005698 2.8e-61 238.8 154 73.4
ClCG10G017380 Citrullus lanatus HOM05D004743 ORTHO05D005698 7.7e-59 230.7 249 53.4
Lalb_Chr18g0047741 Lupinus albus HOM05D004743 ORTHO05D005698 1.0e-58 230.3 142 76.8
HPP92_001833 Vanilla planifolia HOM05D004743 ORTHO05D005698 6.6e-58 227.6 156 69.9
THA.LOC104802456 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 8.6e-58 227.3 143 74.8
Cfa016899 Carpinus fangiana HOM05D006381 ORTHO05D008523 2.1e-56 222.6 135 79.3
Atru.chr8.1050 Acer truncatum HOM05D004743 ORTHO05D005698 1.4e-55 219.9 125 84.0
TWI77G0677 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 2.3e-55 219.2 159 68.6
Zm00001eb252780 Zea mays HOM05D004743 ORTHO05D005698 2.0e-54 216.1 144 70.8
Os02g0717300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 7.5e-54 214.2 144 69.4
Nn7g36049 Nelumbo nucifera HOM05D004743 ORTHO05D005698 9.8e-54 213.8 123 83.7
unitig_26.g9039 Utricularia gibba HOM05D004743 ORTHO05D005698 8.3e-53 210.7 207 54.1
TWI53G0547 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 7.8e-51 204.1 160 63.8
Oeu008114.1 Olea europaea HOM05D004743 ORTHO05D005698 1.6e-48 196.4 302 41.1
TPR.G13232 Trifolium pratense HOM05D004743 ORTHO05D005698 2.8e-48 195.7 115 79.1
SalBow6G0397 Salvia bowleyana HOM05D004743 ORTHO05D005698 3.6e-48 195.3 187 56.1
SEGI_22128 Sequoiadendron giganteum HOM05D004743 ORTHO05D005698 2.0e-46 189.5 158 59.5
QL07p023149 Quercus lobata HOM05D004743 ORTHO05D005698 9.8e-46 187.2 111 78.4
Hund19190 Selenicereus undatus HOM05D004743 ORTHO05D005698 2.4e-44 182.6 142 66.9
CiPaw.09G032100 Carya illinoinensis HOM05D004743 ORTHO05D005698 6.4e-37 157.9 99 81.8
Eucgr.A02439 Eucalyptus grandis HOM05D004743 ORTHO05D005698 3.2e-36 155.6 111 68.5
C04p16200 Brassica napus HOM05D004743 ORTHO05D005698 4.6e-35 151.8 133 57.1
BolC4t21974H Brassica oleracea HOM05D004743 ORTHO05D005698 5.1e-34 148.3 99 71.7
Mapoly0011s0060 Marchantia polymorpha HOM05D004743 ORTHO05D005698 1.1e-33 147.1 154 48.7
Pp3c6_9862 Physcomitrium patens HOM05D004743 ORTHO05D005698 3.1e-31 139.0 149 49.0
Pp3c5_22310 Physcomitrium patens HOM05D004743 ORTHO05D005698 4.0e-31 138.7 149 49.0
THA.LOC104824466 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 8.4e-29 131.0 145 49.7
CBR_g32607 Chara braunii HOM05D004743 ORTHO05D005698 2.4e-28 129.4 152 45.4
C04p16220 Brassica napus HOM05D004743 ORTHO05D005698 3.2e-28 129.0 77 76.6
BcaC03g17937 Brassica carinata HOM05D004743 ORTHO05D005698 2.1e-27 126.3 146 52.1
AagrBONN_evm.TU.Sc2ySwM_362.1495 Anthoceros agrestis HOM05D004743 ORTHO05D005698 3.3e-25 119.0 143 44.8
Os09g0279300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 1.6e-24 116.7 132 45.5
C09p44920 Brassica napus HOM05D004743 ORTHO05D005698 3.1e-23 112.5 66 78.8
arahy.Tifrunner.gnm1.ann1.MK9Y65 Arachis hypogaea HOM05D004743 ORTHO05D005698 1.2e-22 110.5 96 59.4
arahy.Tifrunner.gnm1.ann1.W4Y9B5 Arachis hypogaea HOM05D004743 ORTHO05D005698 1.2e-22 110.5 96 59.4
arahy.Tifrunner.gnm1.ann1.GN7FJD Arachis hypogaea HOM05D004743 ORTHO05D005698 1.5e-22 110.2 65 76.9
arahy.Tifrunner.gnm1.ann1.YRY7W4 Arachis hypogaea HOM05D004743 ORTHO05D005698 2.6e-22 109.4 79 68.4
arahy.Tifrunner.gnm1.ann1.HF75RM Arachis hypogaea HOM05D004743 ORTHO05D005698 3.8e-21 105.5 64 76.6
Zm00001eb308440 Zea mays HOM05D004743 ORTHO05D005698 2.4e-20 102.8 144 41.0
BcaC04g22765 Brassica carinata HOM05D004743 ORTHO05D005698 3.2e-20 102.4 78 66.7
arahy.Tifrunner.gnm1.ann1.L5I9G2 Arachis hypogaea HOM05D004743 ORTHO05D005698 5.4e-20 101.7 64 73.4
C02p59940 Brassica napus HOM05D004743 ORTHO05D005698 7.8e-19 97.8 101 54.5
PSO063G6118 Papaver somniferum HOM05D004743 ORTHO05D005698 7.9e-11 71.2 146 36.3
arahy.Tifrunner.gnm1.ann1.1ZE97X Arachis hypogaea HOM05D004743 ORTHO05D005698 3.3e-09 65.9 69 50.7
arahy.Tifrunner.gnm1.ann1.JW2HXV Arachis hypogaea HOM05D004743 ORTHO05D005698 9.6e-09 64.3 69 49.3
TPR.G284 Trifolium pratense HOM05D004743 ORTHO05D005698 1.5e-06 57.0 47 61.7
AT3G57900 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 5.8e-06 55.1 96 35.4


User provided reference genes

Program Settings