Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g21640 Coffea canephora HOM05D007573 ORTHO05D009938 3.7e-28 127.5 63 100.0
Nitab4.5_0003688g0030 Nicotiana tabacum HOM05D007573 ORTHO05D009938 1.6e-20 102.1 57 84.2
Nitab4.5_0003769g0010 Nicotiana tabacum HOM05D007573 ORTHO05D009938 1.6e-20 102.1 57 84.2
MSTRG.15220 Avicennia marina HOM05D007573 ORTHO05D009938 1.4e-19 99.0 60 78.3
Solyc07g063250.3 Solanum lycopersicum HOM05D007573 ORTHO05D009938 2.4e-19 98.2 61 75.4
Peaxi162Scf00069g01326 Petunia axillaris HOM05D007573 ORTHO05D009938 2.0e-18 95.1 54 81.5
Dinv04316 Davidia involucrata HOM05D007573 ORTHO05D009938 1.3e-17 92.4 60 71.7
Nn8g41073 Nelumbo nucifera HOM05D007573 ORTHO05D009938 2.5e-16 88.2 62 69.4
VMungo1383G0060 Vigna mungo HOM05D007573 ORTHO05D009938 2.5e-16 88.2 58 69.0
Thecc.07G080300 Theobroma cacao HOM05D007573 ORTHO05D009938 5.5e-16 87.0 46 87.0
TAR626G0043 Trochodendron aralioides HOM05D007573 ORTHO05D009938 5.5e-16 87.0 58 70.7
Phvul.011G213100 Phaseolus vulgaris HOM05D007573 ORTHO05D009938 7.2e-16 86.7 58 67.2
Aa31LG8G2630 Aethionema arabicum HOM05D007573 ORTHO05D009938 9.3e-16 86.3 56 71.4
CSS0004701 Camellia sinensis var. sinensis HOM05D007573 ORTHO05D009938 9.3e-16 86.3 58 70.7
Hma1.2p1_0540F.1_g174720 Hydrangea macrophylla HOM05D007573 ORTHO05D009938 9.3e-16 86.3 60 65.0
Hma1.2p1_0540F.1_g174725 Hydrangea macrophylla HOM05D007573 ORTHO05D009938 9.3e-16 86.3 60 65.0
Cpa.g.sc80.44 Carica papaya HOM05D007573 ORTHO05D009938 2.1e-15 85.1 46 82.6
TWI39G0607 Tripterygium wilfordii HOM05D007573 ORTHO05D009938 2.7e-15 84.7 57 66.7
Dinv08308 Davidia involucrata HOM05D007573 ORTHO05D009938 3.6e-15 84.3 46 80.4
ClCG10G006860 Citrullus lanatus HOM05D007573 ORTHO05D009938 4.6e-15 84.0 53 71.7
Os02g0197400 Oryza sativa ssp. japonica HOM05D007573 ORTHO05D009938 6.1e-15 83.6 60 66.7
Glyma.12G150700 Glycine max HOM05D007573 ORTHO05D009938 7.9e-15 83.2 58 65.5
COL.COLO4_09423 Corchorus olitorius HOM05D007573 ORTHO05D009938 1.0e-14 82.8 62 66.1
Glyma.06G246700 Glycine max HOM05D007573 ORTHO05D009938 1.0e-14 82.8 58 65.5
CDE03G0215 Ceratophyllum demersum HOM05D001610 ORTHO05D001585 1.8e-14 82.0 55 70.9
Sed0027924 Sechium edule HOM05D007573 ORTHO05D009938 1.8e-14 82.0 46 76.1
Ciclev10010140m.g Citrus clementina HOM05D007573 ORTHO05D009938 2.3e-14 81.6 52 69.2
Haze_09458 Corylus avellana HOM05D007573 ORTHO05D009938 3.0e-14 81.3 46 76.1
Manes.03G112266 Manihot esculenta HOM05D007573 ORTHO05D009938 3.0e-14 81.3 60 63.3
Potri.001G402000 Populus trichocarpa HOM05D007573 ORTHO05D009938 3.0e-14 81.3 60 61.7
TWI77G0001 Tripterygium wilfordii HOM05D007573 ORTHO05D009938 3.0e-14 81.3 59 62.7
Lalb_Chr19g0134301 Lupinus albus HOM05D007573 ORTHO05D009938 3.9e-14 80.9 60 61.7
Atru.chr2.2713 Acer truncatum HOM05D007573 ORTHO05D009938 5.1e-14 80.5 57 64.9
Gohir.A01G065200 Gossypium hirsutum HOM05D007573 ORTHO05D009938 6.7e-14 80.1 46 78.3
AL3G27940 Arabidopsis lyrata HOM05D007573 ORTHO05D009938 8.7e-14 79.7 54 70.4
AT3G15395 Arabidopsis thaliana HOM05D007573 ORTHO05D009938 8.7e-14 79.7 54 70.4
Psat4g143240 Pisum sativum HOM05D007573 ORTHO05D009938 8.7e-14 79.7 52 69.2
MELO3C016521.2 Cucumis melo HOM05D007573 ORTHO05D009938 1.1e-13 79.3 54 63.0
CsaV3_3G006210 Cucumis sativus L. HOM05D007573 ORTHO05D009938 1.1e-13 79.3 54 63.0
AL230U10020 Arabidopsis lyrata HOM05D007573 ORTHO05D013670 1.5e-13 79.0 53 71.7
CARHR090450 Cardamine hirsuta HOM05D007573 ORTHO05D009938 1.5e-13 79.0 54 68.5
CiPaw.12G120200 Carya illinoinensis HOM05D007573 ORTHO05D009938 1.5e-13 79.0 56 66.1
Gorai.002G072400 Gossypium raimondii HOM05D007573 ORTHO05D009938 1.5e-13 79.0 57 66.7
Medtr8g043400 Medicago truncatula HOM05D007573 ORTHO05D009938 1.5e-13 79.0 60 60.0
Thhalv10021902m.g Eutrema salsugineum HOM05D007573 ORTHO05D009938 2.5e-13 78.2 54 68.5
Carub.0003s1512 Capsella rubella HOM05D007573 ORTHO05D009938 3.3e-13 77.8 54 70.4
PSO017G6785 Papaver somniferum HOM05D007573 ORTHO05D009938 3.3e-13 77.8 45 75.6
HPP92_024073 Vanilla planifolia HOM05D007573 ORTHO05D009938 3.3e-13 77.8 63 63.5
ATR0751G258 Amborella trichopoda HOM05D007573 ORTHO05D009938 4.3e-13 77.4 54 66.7
FAN18G1355 Fragaria x ananassa HOM05D007573 ORTHO05D009938 4.3e-13 77.4 60 61.7
FAN18G3111 Fragaria x ananassa HOM05D007573 ORTHO05D009938 4.3e-13 77.4 60 61.7
RcHm_v2.0_Chr5g0034341 Rosa chinensis HOM05D007573 ORTHO05D009938 4.3e-13 77.4 46 73.9
Duzib213G0732 Durio zibethinus HOM05D007573 ORTHO05D009938 5.7e-13 77.0 57 64.9
Migut.M00851 Erythranthe guttata HOM05D007573 ORTHO05D009938 5.7e-13 77.0 56 62.5
Prupe.4G184300 Prunus persica HOM05D007573 ORTHO05D009938 5.7e-13 77.0 60 60.0
Hund27723 Selenicereus undatus HOM05D007573 ORTHO05D009938 5.7e-13 77.0 58 65.5
Hund27736 Selenicereus undatus HOM05D007573 ORTHO05D009938 5.7e-13 77.0 58 65.5
EL10Ac3g05359 Beta vulgaris HOM05D007573 ORTHO05D009938 9.7e-13 76.3 52 69.2
BcaB06g29571 Brassica carinata HOM05D007573 ORTHO05D009938 9.7e-13 76.3 53 66.0
C05p51770 Brassica napus HOM05D007573 ORTHO05D009938 9.7e-13 76.3 53 66.0
BolC5t33863H Brassica oleracea HOM05D007573 ORTHO05D009938 9.7e-13 76.3 53 66.0
A03p39300 Brassica napus HOM05D007573 ORTHO05D009938 1.3e-12 75.9 51 68.6
C03p47670 Brassica napus HOM05D007573 ORTHO05D009938 1.3e-12 75.9 51 68.6
BraA03t13080Z Brassica rapa HOM05D003356 ORTHO05D004362 1.3e-12 75.9 51 68.6
Lj3g0024326 Lotus japonicus HOM05D007573 ORTHO05D009938 1.3e-12 75.9 61 62.3
Lalb_Chr03g0030571 Lupinus albus HOM05D007573 ORTHO05D009938 1.6e-12 75.5 58 58.6
Aqoxy7G03752 Aquilegia oxysepala HOM05D007573 ORTHO05D009938 2.2e-12 75.1 40 77.5
CANSAT54G1030 Cannabis sativa HOM05D007573 ORTHO05D009938 2.2e-12 75.1 58 58.6
FAN04G1519 Fragaria x ananassa HOM05D007573 ORTHO05D009938 2.2e-12 75.1 58 62.1
CiPaw.08G146300 Carya illinoinensis HOM05D007573 ORTHO05D009938 3.7e-12 74.3 46 71.7
MD00G1089500 Malus domestica HOM05D007573 ORTHO05D009938 3.7e-12 74.3 60 55.0
THA.LOC104810481 Tarenaya hassleriana HOM05D007573 ORTHO05D009938 3.7e-12 74.3 55 63.6
Lsat_1_v5_gn_7_105220 Lactuca sativa HOM05D007573 ORTHO05D009938 8.2e-12 73.2 41 78.0
PGR031G1039 Punica granatum HOM05D007573 ORTHO05D009938 1.8e-11 72.0 56 62.5
C07p18110 Brassica napus HOM05D003404 ORTHO05D009938 6.9e-11 70.1 43 69.8
MBI15_g18737_MAGBIO Magnolia biondii HOM05D007573 ORTHO05D009938 9.1e-11 69.7 42 73.8
Actinidia09676 Actinidia chinensis HOM05D007573 ORTHO05D009938 1.2e-10 69.3 46 76.1
BcaC01g03875 Brassica carinata HOM05D007573 ORTHO05D009938 2.0e-10 68.6 59 59.3
SalBow7G4816 Salvia bowleyana HOM05D007573 ORTHO05D009938 3.8e-09 64.3 101 40.6
Potri.006G225232 Populus trichocarpa HOM05D007573 ORTHO05D009938 1.9e-08 62.0 60 60.0
PGSC0003DMG400012424 Solanum tuberosum HOM05D007573 ORTHO05D009938 1.2e-07 59.3 29 82.8
SHI14860 Sapria himalayana HOM05D007573 ORTHO05D009938 2.1e-07 58.5 45 57.8
MD03G1224700 Malus domestica HOM05D007573 ORTHO05D009938 3.0e-06 54.7 48 54.2


User provided reference genes

Program Settings