Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g21590 Coffea canephora HOM05D003796 ORTHO05D004486 7.5e-104 380.6 197 100.0
MSTRG.22023 Avicennia marina HOM05D003796 ORTHO05D004486 2.8e-42 176.0 185 56.2
TAR362G0252 Trochodendron aralioides HOM05D003796 ORTHO05D004486 1.8e-41 173.3 124 72.6
Atru.chr4.1395 Acer truncatum HOM05D003796 ORTHO05D004486 3.1e-41 172.6 124 68.5
CAN.G1432.20 Capsicum annuum HOM05D003796 ORTHO05D004486 3.4e-40 169.1 129 70.5
Cpa.g.sc9.357 Carica papaya HOM05D003796 ORTHO05D004486 1.0e-39 167.5 177 54.8
Solyc06g074890.1 Solanum lycopersicum HOM05D003796 ORTHO05D004486 5.0e-39 165.2 128 68.8
Sopen06g031300 Solanum pennellii HOM05D003796 ORTHO05D004486 5.0e-39 165.2 128 68.8
PGSC0003DMG401007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 5.0e-39 165.2 138 65.9
Ciclev10021832m.g Citrus clementina HOM05D003796 ORTHO05D004486 6.5e-39 164.9 124 68.5
Prupe.1G586900 Prunus persica HOM05D003796 ORTHO05D004486 1.1e-38 164.1 108 75.9
Hma1.2p1_0150F.1_g066730 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 3.2e-38 162.5 121 66.9
Actinidia28983 Actinidia chinensis HOM05D003796 ORTHO05D004486 5.5e-38 161.8 163 56.4
CiPaw.01G171300 Carya illinoinensis HOM05D003796 ORTHO05D004486 1.6e-37 160.2 152 58.6
Migut.N03072 Erythranthe guttata HOM05D003796 ORTHO05D004486 3.5e-37 159.1 121 71.1
MD08G1249800 Malus domestica HOM05D003796 ORTHO05D004486 7.9e-37 157.9 120 66.7
Nn7g37675 Nelumbo nucifera HOM05D003796 ORTHO05D004486 7.9e-37 157.9 121 67.8
Sed0014142 Sechium edule HOM05D003796 ORTHO05D004486 7.9e-37 157.9 130 62.3
Manes.11G130100 Manihot esculenta HOM05D003796 ORTHO05D004486 1.8e-36 156.8 127 59.8
ECA240G0037 Erigeron canadensis HOM05D003796 ORTHO05D004486 6.7e-36 154.8 163 54.6
FvH4_4g10500 Fragaria vesca HOM05D003796 ORTHO05D004486 6.7e-36 154.8 124 66.1
Potri.013G125600 Populus trichocarpa HOM05D003796 ORTHO05D004486 6.7e-36 154.8 125 62.4
PGR042G0542 Punica granatum HOM05D003796 ORTHO05D004486 8.7e-36 154.5 122 64.8
MELO3C022427.2 Cucumis melo HOM05D003796 ORTHO05D004486 2.5e-35 152.9 142 54.9
Gohir.D05G328000 Gossypium hirsutum HOM05D003796 ORTHO05D004486 2.5e-35 152.9 128 59.4
HanXRQChr13g0418501 Helianthus annuus HOM05D003796 ORTHO05D004486 3.3e-35 152.5 107 71.0
Lsat_1_v5_gn_3_110880 Lactuca sativa HOM05D003796 ORTHO05D004486 3.3e-35 152.5 104 73.1
Gohir.A05G327600 Gossypium hirsutum HOM05D003796 ORTHO05D004486 4.3e-35 152.1 112 65.2
CDE04G0900 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 5.7e-35 151.8 131 58.8
CsaV3_6G007010 Cucumis sativus L. HOM05D003796 ORTHO05D004486 5.7e-35 151.8 130 56.9
Glyma.12G048900 Glycine max HOM05D003796 ORTHO05D004486 1.6e-34 150.2 122 62.3
RcHm_v2.0_Chr4g0406061 Rosa chinensis HOM05D003796 ORTHO05D004486 1.6e-34 150.2 108 70.4
Duzib268G1213 Durio zibethinus HOM05D003796 ORTHO05D004486 2.8e-34 149.4 112 64.3
Gorai.009G351700 Gossypium raimondii HOM05D003796 ORTHO05D004486 4.8e-34 148.7 129 58.9
GSVIVG01038135001 Vitis vinifera HOM05D003796 ORTHO05D004486 4.8e-34 148.7 161 52.2
Lj3g0002298 Lotus japonicus HOM05D003796 ORTHO05D004486 6.3e-34 148.3 132 57.6
VMungo1127G1870 Vigna mungo HOM05D003796 ORTHO05D004486 1.1e-33 147.5 126 59.5
Dinv33197 Davidia involucrata HOM05D003796 ORTHO05D004486 1.4e-33 147.1 124 66.1
CANSAT35G0237 Cannabis sativa HOM05D003796 ORTHO05D004486 3.1e-33 146.0 108 69.4
Lalb_Chr19g0138481 Lupinus albus HOM05D003796 ORTHO05D004486 5.3e-33 145.2 108 64.8
Medtr4g068280 Medicago truncatula HOM05D003796 ORTHO05D004486 6.9e-33 144.8 124 59.7
Peaxi162Scf00568g00527 Petunia axillaris HOM05D003796 ORTHO05D004486 9.0e-33 144.4 140 61.4
Phvul.011G051000 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 1.5e-32 143.7 138 55.1
MBI08_g25562_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 5.9e-32 141.7 105 66.7
QL10p054554 Quercus lobata HOM05D003796 ORTHO05D004486 1.3e-31 140.6 130 58.5
arahy.Tifrunner.gnm1.ann1.P7R60W Arachis hypogaea HOM05D003796 ORTHO05D004486 1.7e-31 140.2 138 55.1
Nitab4.5_0007977g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 2.9e-31 139.4 132 61.4
TWI63G0811 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 2.5e-30 136.3 184 44.6
Sopen06g031310 Solanum pennellii HOM05D003796 ORTHO05D004486 4.2e-30 135.6 137 56.9
Solyc06g074900.3 Solanum lycopersicum HOM05D003796 ORTHO05D004486 1.6e-29 133.7 137 56.9
PGSC0003DMG402007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 1.6e-29 133.7 134 55.2
ATR0075G004 Amborella trichopoda HOM05D003796 ORTHO05D004486 3.6e-29 132.5 108 61.1
SGA_v2.0_scaffold25G10998 Striga asiatica HOM05D003796 ORTHO05D004486 7.9e-29 131.3 188 45.2
CAN.G1001.53 Capsicum annuum HOM05D003796 ORTHO05D004486 1.8e-28 130.2 129 57.4
TPR.G10226 Trifolium pratense HOM05D003796 ORTHO05D004486 1.8e-28 130.2 176 43.2
PSO832G1541 Papaver somniferum HOM05D003796 ORTHO05D004486 2.3e-28 129.8 107 56.1
AUR62002376 Chenopodium quinoa HOM05D003796 ORTHO05D004486 3.0e-28 129.4 138 50.0
arahy.Tifrunner.gnm1.ann1.I4880T Arachis hypogaea HOM05D003796 ORTHO05D004486 8.8e-28 127.9 154 50.6
AUR62023807 Chenopodium quinoa HOM05D003796 ORTHO05D004486 1.1e-27 127.5 121 54.5
Ca_20812_v3 Cicer arietinum L. HOM05D003796 ORTHO05D004486 2.5e-27 126.3 144 50.0
PSO210G4043 Papaver somniferum HOM05D003796 ORTHO05D004486 9.7e-27 124.4 107 54.2
EL10Ac3g06067 Beta vulgaris HOM05D003796 ORTHO05D004486 2.8e-26 122.9 133 51.9
Aqoxy2G01069 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 8.2e-26 121.3 103 55.3
Oeu021569.1 Olea europaea HOM05D003796 ORTHO05D004486 2.0e-24 116.7 142 50.7
Os01g0894700 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 3.4e-24 115.9 157 43.9
Sc19g0002760 Simmondsia chinensis HOM05D003796 ORTHO05D004486 1.7e-23 113.6 83 66.3
FAN12G1593 Fragaria x ananassa HOM05D003796 ORTHO05D004486 5.0e-23 112.1 119 55.5
SEGI_15351 Sequoiadendron giganteum HOM05D003796 ORTHO05D004486 5.0e-23 112.1 106 55.7
AagrBONN_evm.TU.Sc2ySwM_117.3751 Anthoceros agrestis HOM05D003796 ORTHO05D004486 1.2e-21 107.5 145 42.1
Zm00001eb144880 Zea mays HOM05D003796 ORTHO05D004486 1.2e-21 107.5 159 41.5
Psat7g207840 Pisum sativum HOM05D003796 ORTHO05D004486 3.6e-21 105.9 75 62.7
CBR_g31497 Chara braunii HOM05D003796 ORTHO05D004486 1.4e-20 104.0 101 48.5
Sabra13G0104400 Salix brachista HOM05D003796 ORTHO05D004486 1.3e-18 97.4 148 43.2
QL93p1902_0792 Quercus lobata HOM05D003796 ORTHO05D004486 2.8e-18 96.3 87 57.5
QL10p054570 Quercus lobata HOM05D003796 ORTHO05D004486 4.8e-18 95.5 87 56.3
FAN22G2021 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.1e-17 94.4 76 64.5
FAN07G1083 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.4e-17 94.0 76 64.5
Pp3c14_20300 Physcomitrium patens HOM05D003796 ORTHO05D004486 1.4e-17 94.0 105 44.8
CAN.G1001.52 Capsicum annuum HOM05D003796 ORTHO05D004486 1.8e-17 93.6 54 81.5
FAN12G2909 Fragaria x ananassa HOM05D003796 ORTHO05D004486 3.1e-17 92.8 84 59.5
CDE09G0312 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 2.6e-16 89.7 137 36.5
Potri.013G125500 Populus trichocarpa HOM05D003796 ORTHO05D004486 4.5e-16 89.0 110 37.3
PGR042G1269 Punica granatum HOM05D003796 ORTHO05D004486 1.3e-15 87.4 110 39.1
Hund03191 Selenicereus undatus HOM05D003796 ORTHO05D004486 1.7e-15 87.0 122 41.0
Ah.13g073570 Amaranthus hybridus HOM05D003796 ORTHO05D004486 5.0e-15 85.5 125 42.4
Glyma.04G117800 Glycine max HOM05D003796 ORTHO05D004486 5.0e-15 85.5 86 43.0
PSO832G2763 Papaver somniferum HOM05D003796 ORTHO05D004486 6.5e-15 85.1 78 46.2
Sabra13G0104300 Salix brachista HOM05D003796 ORTHO05D004486 6.5e-15 85.1 115 36.5
TWI63G1493 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 1.5e-14 84.0 74 56.8
PSO210G6849 Papaver somniferum HOM05D003796 ORTHO05D004486 1.9e-14 83.6 145 31.7
Atru.chr4.1394 Acer truncatum HOM05D003796 ORTHO05D004486 3.2e-14 82.8 83 43.4
CsaV3_6G007000 Cucumis sativus L. HOM05D003796 ORTHO05D004486 3.2e-14 82.8 86 41.9
Duzib268G0739 Durio zibethinus HOM05D003796 ORTHO05D004486 3.2e-14 82.8 122 36.1
ClCG06G001070 Citrullus lanatus HOM05D003796 ORTHO05D004486 4.2e-14 82.4 86 41.9
DCAR_005444 Daucus carota HOM05D003796 ORTHO05D004486 4.2e-14 82.4 120 35.0
Cpa.g.sc9.356 Carica papaya HOM05D003796 ORTHO05D004486 5.5e-14 82.0 110 35.5
Lj3g0024133 Lotus japonicus HOM05D005948 ORTHO05D007689 5.5e-14 82.0 123 35.0
Lalb_Chr18g0048811 Lupinus albus HOM05D003796 ORTHO05D004486 5.5e-14 82.0 125 33.6
Medtr3g009150 Medicago truncatula HOM05D003796 ORTHO05D004486 5.5e-14 82.0 111 39.6
Thecc.04G167900 Theobroma cacao HOM05D003796 ORTHO05D004486 5.5e-14 82.0 83 42.2
HPP92_001250 Vanilla planifolia HOM05D003796 ORTHO05D004486 5.5e-14 82.0 120 35.8
GSVIVG01038134001 Vitis vinifera HOM05D003796 ORTHO05D004486 7.2e-14 81.6 110 34.5
AT2G30695 Arabidopsis thaliana HOM05D003796 ORTHO05D004486 9.4e-14 81.3 162 35.2
VMungo1080G1154 Vigna mungo HOM05D003796 ORTHO05D004486 9.4e-14 81.3 109 39.4
AL4G25590 Arabidopsis lyrata HOM05D003796 ORTHO05D004486 1.2e-13 80.9 85 42.4
CiPaw.02G100800 Carya illinoinensis HOM05D003796 ORTHO05D004486 1.2e-13 80.9 123 35.0
MELO3C022428.2 Cucumis melo HOM05D003796 ORTHO05D004486 1.2e-13 80.9 104 38.5
Gohir.A02G091201 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.2e-13 80.9 85 41.2
Gohir.A02G091300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.2e-13 80.9 85 41.2
Prupe.1G206000 Prunus persica HOM05D003796 ORTHO05D004486 1.2e-13 80.9 81 42.0
HPP92_001266 Vanilla planifolia HOM05D003796 ORTHO05D004486 1.2e-13 80.9 120 35.0
arahy.Tifrunner.gnm1.ann1.T3U7B8 Arachis hypogaea HOM05D003796 ORTHO05D004486 2.1e-13 80.1 112 37.5
BraA04t17867Z Brassica rapa HOM05D003796 ORTHO05D004486 2.1e-13 80.1 85 41.2
Nn1g09689 Nelumbo nucifera HOM05D003796 ORTHO05D004486 2.1e-13 80.1 78 43.6
TAR362G0647 Trochodendron aralioides HOM05D003796 ORTHO05D004486 2.1e-13 80.1 80 42.5
Carub.0004s1187 Capsella rubella HOM05D003796 ORTHO05D004486 2.7e-13 79.7 164 34.1
Cc06_g21580 Coffea canephora HOM05D003796 ORTHO05D004486 2.7e-13 79.7 120 36.7
THA.LOC104800810 Tarenaya hassleriana HOM05D003796 ORTHO05D004486 3.6e-13 79.3 153 30.1
Eucgr.A00012 Eucalyptus grandis HOM05D003796 ORTHO05D004486 4.7e-13 79.0 109 37.6
MD04G1048700 Malus domestica HOM05D003796 ORTHO05D004486 4.7e-13 79.0 83 39.8
Os09g0515400 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 4.7e-13 79.0 110 38.2
FAN25G0936 Fragaria x ananassa HOM05D003796 ORTHO05D004486 6.1e-13 78.6 130 29.2
Ciclev10022254m.g Citrus clementina HOM05D003796 ORTHO05D004486 8.0e-13 78.2 83 39.8
Sp4g13210 Schrenkiella parvula HOM05D003796 ORTHO05D004486 1.0e-12 77.8 165 34.5
Dinv01938 Davidia involucrata HOM05D003796 ORTHO05D004486 1.4e-12 77.4 121 36.4
Dinv02937 Davidia involucrata HOM05D003796 ORTHO05D004486 1.4e-12 77.4 140 32.1
Actinidia28984 Actinidia chinensis HOM05D003796 ORTHO05D004486 1.8e-12 77.0 80 42.5
Thhalv10017862m.g Eutrema salsugineum HOM05D003796 ORTHO05D004486 3.9e-12 75.9 106 36.8
RcHm_v2.0_Chr5g0044351 Rosa chinensis HOM05D003796 ORTHO05D004486 3.9e-12 75.9 78 39.7
Zm00001eb102770 Zea mays HOM05D003796 ORTHO05D004486 5.2e-12 75.5 75 45.3
MSTRG.24566 Avicennia marina HOM05D003796 ORTHO05D004486 6.7e-12 75.1 158 27.8
Manes.11G130200 Manihot esculenta HOM05D003796 ORTHO05D004486 6.7e-12 75.1 124 32.3
CARHR124190 Cardamine hirsuta HOM05D003796 ORTHO05D004486 8.8e-12 74.7 160 28.1
Cfa015262 Carpinus fangiana HOM05D003796 ORTHO05D004486 8.8e-12 74.7 78 43.6
CSS0047221 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 1.1e-11 74.3 87 36.8
Aqoxy5G00021 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 1.5e-11 73.9 162 26.5
arahy.Tifrunner.gnm1.ann1.43ZKU2 Arachis hypogaea HOM05D003796 ORTHO05D004486 3.3e-11 72.8 128 35.2
C04p59700 Brassica napus HOM05D003796 ORTHO05D004486 3.3e-11 72.8 86 39.5
Hma1.2p1_0150F.1_g066720 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 4.4e-11 72.4 148 27.0
Zm00001eb318420 Zea mays HOM05D003796 ORTHO05D004486 5.7e-11 72.0 97 34.0
BolC4t27478H Brassica oleracea HOM05D003796 ORTHO05D004486 7.4e-11 71.6 108 36.1
ATR0075G045 Amborella trichopoda HOM05D003796 ORTHO05D004486 1.3e-10 70.9 140 31.4
CANSAT80G1979 Cannabis sativa HOM05D003796 ORTHO05D004486 1.3e-10 70.9 117 30.8
CANSAT80G2480 Cannabis sativa HOM05D003796 ORTHO05D004486 1.7e-10 70.5 160 27.5
Peaxi162Scf00568g00059 Petunia axillaris HOM05D003796 ORTHO05D011410 3.7e-10 69.3 138 29.7
TPR.G16683 Trifolium pratense HOM05D003796 ORTHO05D004486 4.8e-10 68.9 134 32.8
Rhsim02G0083600 Rhododendron simsii HOM05D003796 ORTHO05D004486 6.3e-10 68.6 132 28.0
Eucgr.A00010 Eucalyptus grandis HOM05D003796 ORTHO05D004486 1.1e-09 67.8 39 79.5
arahy.Tifrunner.gnm1.ann1.PV0LGU Arachis hypogaea HOM05D003796 ORTHO05D004486 1.8e-09 67.0 120 30.8
A04p23400 Brassica napus HOM05D003796 ORTHO05D004486 2.4e-09 66.6 95 34.7
ClCG06G001080 Citrullus lanatus HOM05D003796 ORTHO05D004486 3.1e-09 66.2 91 41.8
MBI08_g25561_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 3.1e-09 66.2 81 35.8
Gorai.005G124300 Gossypium raimondii HOM05D003796 ORTHO05D004486 1.2e-08 64.3 80 37.5
Aa31LG5G6120 Aethionema arabicum HOM05D004685 ORTHO05D005412 2.0e-08 63.5 112 31.2
Oeu020812.1 Olea europaea HOM05D003796 ORTHO05D004486 1.0e-07 61.2 51 49.0
QL10p054541 Quercus lobata HOM05D003796 ORTHO05D004486 1.0e-07 61.2 93 33.3
FAN21G0866 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.3e-07 60.8 108 28.7
Nitab4.5_0000504g0010 Nicotiana tabacum HOM05D003796 ORTHO05D004486 2.2e-07 60.1 103 31.1
Nitab4.5_0000856g0240 Nicotiana tabacum HOM05D003796 ORTHO05D004486 5.0e-07 58.9 61 52.5


User provided reference genes

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