Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g21260 Coffea canephora HOM05D004282 ORTHO05D017169 1.6e-20 101.7 46 100.0
Cc08_g14800 Coffea canephora HOM05D004282 ORTHO05D006804 1.0e-19 99.0 46 97.8
Actinidia02002 Actinidia chinensis HOM05D004282 ORTHO05D006804 5.0e-19 96.7 46 95.7
Aqoxy2G03117 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 5.0e-19 96.7 46 95.7
ClCG01G002660 Citrullus lanatus HOM05D004282 ORTHO05D006804 5.0e-19 96.7 46 95.7
DCAR_006738 Daucus carota HOM05D004282 ORTHO05D006804 5.0e-19 96.7 46 95.7
DCAR_006739 Daucus carota HOM05D004282 ORTHO05D006804 5.0e-19 96.7 46 95.7
Dinv37635 Davidia involucrata HOM05D004282 ORTHO05D006804 5.0e-19 96.7 46 95.7
Rhsim02G0231700 Rhododendron simsii HOM05D004282 ORTHO05D006804 5.0e-19 96.7 46 95.7
Hund14799 Selenicereus undatus HOM05D004282 ORTHO05D006804 5.0e-19 96.7 46 95.7
vmacro11363 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 5.0e-19 96.7 46 95.7
vmacro22817 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 5.0e-19 96.7 46 95.7
GSVIVG01019748001 Vitis vinifera HOM05D004282 ORTHO05D006804 5.0e-19 96.7 46 95.7
Actinidia14566 Actinidia chinensis HOM05D004282 ORTHO05D017169 1.1e-18 95.5 46 93.5
CSS0007959 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 1.1e-18 95.5 46 93.5
CSS0014359 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 1.1e-18 95.5 46 93.5
DCAR_008399 Daucus carota HOM05D004282 ORTHO05D006804 1.1e-18 95.5 46 93.5
PSO478G3502 Papaver somniferum HOM05D004282 ORTHO05D006804 1.1e-18 95.5 46 93.5
PSO782G4766 Papaver somniferum HOM05D004282 ORTHO05D006804 1.1e-18 95.5 46 93.5
Lj2A0T39 Lonicera japonica HOM05D004282 ORTHO05D006804 1.5e-18 95.1 46 93.5
Lj4g0008271 Lotus japonicus HOM05D004282 ORTHO05D006804 1.5e-18 95.1 46 93.5
Hma1.2p1_0209F.1_g088780 Hydrangea macrophylla HOM05D004282 ORTHO05D006804 1.9e-18 94.7 45 93.3
Duzib084G1154 Durio zibethinus HOM05D004282 ORTHO05D006804 2.5e-18 94.4 46 93.5
Lj8A221T67 Lonicera japonica HOM05D004282 ORTHO05D006804 2.5e-18 94.4 46 91.3
MELO3C005680.2 Cucumis melo HOM05D004282 ORTHO05D006804 3.3e-18 94.0 46 91.3
CsaV3_5G002770 Cucumis sativus L. HOM05D004282 ORTHO05D006804 3.3e-18 94.0 46 91.3
THA.LOC104817993 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 3.3e-18 94.0 46 91.3
Aqoxy7G00313 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 4.3e-18 93.6 46 93.5
Cfa012224 Carpinus fangiana HOM05D004282 ORTHO05D006804 4.3e-18 93.6 46 93.5
Manes.02G019600 Manihot esculenta HOM05D004282 ORTHO05D006804 4.3e-18 93.6 46 93.5
Manes.08G013300 Manihot esculenta HOM05D004282 ORTHO05D006804 4.3e-18 93.6 46 93.5
Potri.003G128200 Populus trichocarpa HOM05D004282 ORTHO05D006804 4.3e-18 93.6 46 93.5
PGR042G2758 Punica granatum HOM05D004282 ORTHO05D006804 4.3e-18 93.6 46 93.5
Sabra03G0091200 Salix brachista HOM05D004282 ORTHO05D006804 4.3e-18 93.6 46 93.5
TAR374G0019 Trochodendron aralioides HOM05D004282 ORTHO05D006804 4.3e-18 93.6 46 93.5
TAR375G0364 Trochodendron aralioides HOM05D004282 ORTHO05D006804 5.6e-18 93.2 46 91.3
Atru.chr9.2181 Acer truncatum HOM05D004282 ORTHO05D006804 7.3e-18 92.8 46 91.3
Lj2A185G23 Lonicera japonica HOM05D004282 ORTHO05D006804 7.3e-18 92.8 46 91.3
AL2G11570 Arabidopsis lyrata HOM05D004282 ORTHO05D006804 9.5e-18 92.4 46 89.1
BcaNung07334 Brassica carinata HOM05D004282 ORTHO05D006804 9.5e-18 92.4 46 89.1
A09p15390 Brassica napus HOM05D004282 ORTHO05D006804 9.5e-18 92.4 46 89.1
C09p18660 Brassica napus HOM05D004282 ORTHO05D006804 9.5e-18 92.4 46 89.1
BolC9t54762H Brassica oleracea HOM05D004282 ORTHO05D006804 9.5e-18 92.4 46 89.1
BraA09t37181Z Brassica rapa HOM05D004282 ORTHO05D006804 9.5e-18 92.4 46 89.1
Ciclev10019676m.g Citrus clementina HOM05D004282 ORTHO05D006804 9.5e-18 92.4 46 91.3
Thhalv10023408m.g Eutrema salsugineum HOM05D004282 ORTHO05D006804 9.5e-18 92.4 46 89.1
MD14G1105600 Malus domestica HOM05D004282 ORTHO05D006804 9.5e-18 92.4 46 91.3
Prupe.5G100800 Prunus persica HOM05D004282 ORTHO05D006804 9.5e-18 92.4 46 91.3
Sp2g01000 Schrenkiella parvula HOM05D004282 ORTHO05D006804 9.5e-18 92.4 46 89.1
Thecc.03G279500 Theobroma cacao HOM05D004282 ORTHO05D006804 9.5e-18 92.4 46 91.3
arahy.Tifrunner.gnm1.ann1.4VFV1G Arachis hypogaea HOM05D004282 ORTHO05D006804 1.2e-17 92.0 46 91.3
arahy.Tifrunner.gnm1.ann1.G1AAHV Arachis hypogaea HOM05D004282 ORTHO05D006804 1.2e-17 92.0 46 91.3
MD06G1084500 Malus domestica HOM05D004282 ORTHO05D006804 1.2e-17 92.0 46 89.1
Nn6g33428 Nelumbo nucifera HOM05D004282 ORTHO05D006804 1.2e-17 92.0 46 91.3
QL12p032840 Quercus lobata HOM05D004282 ORTHO05D006804 1.2e-17 92.0 45 91.1
THA.LOC104809396 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 1.2e-17 92.0 46 89.1
VMungo0251G3615 Vigna mungo HOM05D004282 ORTHO05D006804 1.2e-17 92.0 46 91.3
CiPaw.12G092600 Carya illinoinensis HOM05D004282 ORTHO05D006804 1.6e-17 91.7 46 89.1
COL.COLO4_34472 Corchorus olitorius HOM05D004282 ORTHO05D006804 1.6e-17 91.7 46 91.3
SHI07141 Sapria himalayana HOM05D004282 ORTHO05D006804 1.6e-17 91.7 46 89.1
Ca_17527_v3 Cicer arietinum L. HOM05D004282 ORTHO05D006804 2.1e-17 91.3 46 89.1
CiPaw.11G134600 Carya illinoinensis HOM05D004282 ORTHO05D006804 2.8e-17 90.9 46 89.1
Glyma.05G208400 Glycine max HOM05D004282 ORTHO05D006804 2.8e-17 90.9 46 89.1
Lalb_Chr05g0224721 Lupinus albus HOM05D004282 ORTHO05D006804 2.8e-17 90.9 46 89.1
Medtr8g098325 Medicago truncatula HOM05D004282 ORTHO05D006804 2.8e-17 90.9 46 89.1
Phvul.002G290100 Phaseolus vulgaris HOM05D004282 ORTHO05D006804 2.8e-17 90.9 46 89.1
TPR.G12833 Trifolium pratense HOM05D004282 ORTHO05D006804 2.8e-17 90.9 46 89.1
Sc01g0009620 Simmondsia chinensis HOM05D004282 ORTHO05D006804 3.6e-17 90.5 46 87.0
AT1G63660 Arabidopsis thaliana HOM05D004282 ORTHO05D006804 6.2e-17 89.7 46 87.0
Carub.0002s0119 Capsella rubella HOM05D004282 ORTHO05D006804 6.2e-17 89.7 46 87.0
CARHR047680 Cardamine hirsuta HOM05D004282 ORTHO05D006804 6.2e-17 89.7 46 87.0
Aa31LG2G870 Aethionema arabicum HOM05D004282 ORTHO05D006804 8.1e-17 89.4 46 87.0
Eucgr.E00626 Eucalyptus grandis HOM05D004282 ORTHO05D006804 8.1e-17 89.4 46 87.0
Lsat_1_v5_gn_6_6601 Lactuca sativa HOM05D004282 ORTHO05D006804 1.1e-16 89.0 46 89.1
Sed0021454 Sechium edule HOM05D004282 ORTHO05D006804 1.8e-16 88.2 46 87.0
Duzib068G0684 Durio zibethinus HOM05D004282 ORTHO05D006804 2.3e-16 87.8 46 87.0
ECA233G0272 Erigeron canadensis HOM05D004282 ORTHO05D006804 2.3e-16 87.8 46 87.0
ECA246G1826 Erigeron canadensis HOM05D004282 ORTHO05D006804 2.3e-16 87.8 46 87.0
HanXRQChr06g0165861 Helianthus annuus HOM05D004282 ORTHO05D006804 2.3e-16 87.8 46 87.0
HanXRQChr13g0394231 Helianthus annuus HOM05D004282 ORTHO05D006804 2.3e-16 87.8 46 87.0
Lsat_1_v5_gn_3_6581 Lactuca sativa HOM05D004282 ORTHO05D006804 2.3e-16 87.8 46 87.0
CDE06G0245 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 3.1e-16 87.4 46 84.8
RcHm_v2.0_Chr7g0219471 Rosa chinensis HOM05D004282 ORTHO05D006804 2.6e-15 84.3 46 82.6
CAN.G774.52 Capsicum annuum HOM05D004282 ORTHO05D006804 3.4e-15 84.0 46 82.6
Nitab4.5_0000678g0110 Nicotiana tabacum HOM05D004282 ORTHO05D006804 3.4e-15 84.0 46 82.6
Nitab4.5_0001615g0080 Nicotiana tabacum HOM05D004282 ORTHO05D006804 3.4e-15 84.0 46 82.6
Peaxi162Scf00119g00947 Petunia axillaris HOM05D004282 ORTHO05D006804 3.4e-15 84.0 46 82.6
Solyc08g081150.4 Solanum lycopersicum HOM05D004282 ORTHO05D006804 3.4e-15 84.0 46 82.6
Sopen08g029450 Solanum pennellii HOM05D004282 ORTHO05D006804 3.4e-15 84.0 46 82.6
PGSC0003DMG400012205 Solanum tuberosum HOM05D004282 ORTHO05D006804 3.4e-15 84.0 46 82.6
Gohir.D08G201400 Gossypium hirsutum HOM05D004282 ORTHO05D006804 5.8e-15 83.2 46 80.4
Gorai.004G212300 Gossypium raimondii HOM05D004282 ORTHO05D006804 5.8e-15 83.2 46 80.4
FAN04G0421 Fragaria x ananassa HOM05D004282 ORTHO05D006804 7.5e-15 82.8 46 80.4
TWI60G0060 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 7.5e-15 82.8 46 82.6
TWI81G0763 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 9.9e-15 82.4 46 82.6
ATR1101G056 Amborella trichopoda HOM05D004282 ORTHO05D006804 2.9e-14 80.9 46 76.1
Zm00001eb434370 Zea mays HOM05D004282 ORTHO05D006804 2.9e-14 80.9 46 76.1
Gohir.A03G016700 Gossypium hirsutum HOM05D004282 ORTHO05D006804 3.7e-14 80.5 46 78.3
Gohir.D03G151200 Gossypium hirsutum HOM05D004282 ORTHO05D006804 3.7e-14 80.5 46 78.3
Gorai.003G158400 Gossypium raimondii HOM05D004282 ORTHO05D006804 3.7e-14 80.5 46 78.3
SEGI_10668 Sequoiadendron giganteum HOM05D004282 ORTHO05D006804 3.7e-14 80.5 46 78.3
EL10Ac2g04411 Beta vulgaris HOM05D004282 ORTHO05D006804 6.4e-14 79.7 46 78.3
AUR62009455 Chenopodium quinoa HOM05D004282 ORTHO05D006804 6.4e-14 79.7 46 78.3
AUR62023137 Chenopodium quinoa HOM05D004282 ORTHO05D006804 6.4e-14 79.7 46 78.3
FvH4_5g27720 Fragaria vesca HOM05D004282 ORTHO05D006804 6.4e-14 79.7 46 78.3
FAN08G1277 Fragaria x ananassa HOM05D004282 ORTHO05D006804 6.4e-14 79.7 46 78.3
FAN13G2512 Fragaria x ananassa HOM05D004282 ORTHO05D006804 6.4e-14 79.7 46 78.3
FAN18G3468 Fragaria x ananassa HOM05D004282 ORTHO05D006804 6.4e-14 79.7 46 78.3
MBI17_g24637_MAGBIO Magnolia biondii HOM05D004282 ORTHO05D006804 6.4e-14 79.7 46 80.4
Psat7g032640 Pisum sativum HOM05D004282 ORTHO05D006804 6.4e-14 79.7 46 78.3
Os08g0326600 Oryza sativa ssp. japonica HOM05D004282 ORTHO05D006804 8.3e-14 79.3 46 76.1
Pp3c8_7320 Physcomitrium patens HOM05D004282 ORTHO05D006804 1.1e-13 79.0 46 73.9
Ah.10g038320 Amaranthus hybridus HOM05D004282 ORTHO05D006804 1.4e-13 78.6 46 76.1
CANSAT21G1770 Cannabis sativa HOM05D004282 ORTHO05D006804 1.9e-13 78.2 46 76.1
Mapoly0002s0326 Marchantia polymorpha HOM05D004282 ORTHO05D006804 3.2e-13 77.4 46 71.7
MCO08G312 Micromonas commoda HOM05D004282 ORTHO05D006804 3.2e-13 77.4 46 73.9
Migut.A00734 Erythranthe guttata HOM05D004282 ORTHO05D006804 5.4e-13 76.6 46 73.9
SGA_v2.0_scaffold173G39175 Striga asiatica HOM05D004282 ORTHO05D006804 5.4e-13 76.6 46 73.9
CBR_g48399 Chara braunii HOM05D004282 ORTHO05D006804 7.1e-13 76.3 46 71.7
Oeu009150.1 Olea europaea HOM05D004282 ORTHO05D006804 1.2e-12 75.5 46 69.6
unitig_578.g16628 Utricularia gibba HOM05D004282 ORTHO05D006804 1.2e-12 75.5 46 73.9
MSTRG.11981 Avicennia marina HOM05D004282 ORTHO05D006804 1.6e-12 75.1 46 71.7
CDE02G0075 Ceratophyllum demersum HOM05D004282 ORTHO05D021217 2.1e-12 74.7 41 82.9
AagrBONN_evm.TU.Sc2ySwM_344.3490 Anthoceros agrestis HOM05D004282 ORTHO05D006804 3.5e-12 73.9 46 65.2
Oeu019186.1 Olea europaea HOM05D004282 ORTHO05D006804 6.0e-12 73.2 46 67.4
Cre02.g092900 Chlamydomonas reinhardtii HOM05D004282 ORTHO05D006804 7.8e-12 72.8 46 71.7
PRCOL_00000667 Prasinoderma coloniale HOM05D004282 ORTHO05D006804 1.0e-11 72.4 46 69.6
SMO116G0368 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 1.1e-10 68.9 46 65.2
SMO165G0029 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 3.3e-10 67.4 46 65.2
A09p35740 Brassica napus HOM05D004282 ORTHO05D017169 4.7e-09 63.5 41 75.6
A09p59280 Brassica napus HOM05D004282 ORTHO05D017169 4.7e-09 63.5 41 75.6
BraA09t41310Z Brassica rapa HOM05D004282 ORTHO05D017169 4.7e-09 63.5 41 75.6
A03p47680 Brassica napus HOM05D004282 ORTHO05D017169 4.4e-07 57.0 38 73.7
BraA09t37854Z Brassica rapa HOM05D004282 ORTHO05D017169 4.4e-07 57.0 38 73.7
Cfa023610 Carpinus fangiana HOM05D004282 ORTHO05D006804 9.9e-07 55.8 46 60.9


User provided reference genes

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