Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g21080 Coffea canephora HOM05D007528 ORTHO05D008503 2.4e-150 535.4 257 100.0
Lj2A414T28 Lonicera japonica HOM05D007528 ORTHO05D008503 8.6e-76 287.7 258 59.3
Dinv14550 Davidia involucrata HOM05D007528 ORTHO05D008503 2.8e-74 282.7 275 57.1
Eucgr.A02169 Eucalyptus grandis HOM05D007528 ORTHO05D008503 2.6e-72 276.2 243 58.8
Oeu032951.1 Olea europaea HOM05D007528 ORTHO05D008503 2.6e-72 276.2 202 65.8
Manes.09G073900 Manihot esculenta HOM05D007528 ORTHO05D008503 2.2e-71 273.1 240 56.7
DCAR_013508 Daucus carota HOM05D007528 ORTHO05D008503 4.9e-71 271.9 245 57.1
Gorai.002G231000 Gossypium raimondii HOM05D007528 ORTHO05D008503 4.9e-71 271.9 253 55.7
QL11p009983 Quercus lobata HOM05D007528 ORTHO05D008503 4.9e-71 271.9 243 57.6
Duzib093G0275 Durio zibethinus HOM05D007528 ORTHO05D008503 6.4e-71 271.6 242 58.7
Gohir.D01G187600 Gossypium hirsutum HOM05D007528 ORTHO05D008503 8.4e-71 271.2 253 55.3
TAR623G0014 Trochodendron aralioides HOM05D007528 ORTHO05D008503 8.4e-71 271.2 257 56.4
MSTRG.19743 Avicennia marina HOM05D007528 ORTHO05D008503 1.4e-70 270.4 260 57.3
COL.COLO4_08087 Corchorus olitorius HOM05D007528 ORTHO05D008503 1.9e-70 270.0 197 65.0
Migut.J01598 Erythranthe guttata HOM05D007528 ORTHO05D008503 1.9e-70 270.0 256 54.7
PGSC0003DMG400019757 Solanum tuberosum HOM05D007528 ORTHO05D008503 5.4e-70 268.5 255 54.5
Gohir.A01G197400 Gossypium hirsutum HOM05D007528 ORTHO05D008503 9.2e-70 267.7 253 54.9
Thecc.05G128400 Theobroma cacao HOM05D007528 ORTHO05D008503 3.5e-69 265.8 250 57.6
GSVIVG01025860001 Vitis vinifera HOM05D007528 ORTHO05D008503 4.6e-69 265.4 241 58.5
SalBow6G5282 Salvia bowleyana HOM05D007528 ORTHO05D008503 6.0e-69 265.0 207 64.3
CSS0027135 Camellia sinensis var. sinensis HOM05D007528 ORTHO05D008503 1.7e-68 263.5 201 64.2
CANSAT21G0864 Cannabis sativa HOM05D007528 ORTHO05D008503 1.7e-68 263.5 245 56.3
MBI13_g02396_MAGBIO Magnolia biondii HOM05D007528 ORTHO05D008503 3.0e-68 262.7 214 59.3
Nn7g37298 Nelumbo nucifera HOM05D007528 ORTHO05D008503 5.1e-68 261.9 262 52.7
SalBow6G5858 Salvia bowleyana HOM05D007528 ORTHO05D008503 1.5e-67 260.4 266 55.3
Cpa.g.sc33.188 Carica papaya HOM05D007528 ORTHO05D008503 1.9e-67 260.0 184 67.4
Sabra06G0018500 Salix brachista HOM05D007528 ORTHO05D008503 3.3e-67 259.2 225 56.4
HanXRQChr04g0125621 Helianthus annuus HOM05D007528 ORTHO05D008503 5.6e-67 258.5 259 53.3
Lalb_Chr22g0358311 Lupinus albus HOM05D007528 ORTHO05D008503 7.3e-67 258.1 205 60.5
RcHm_v2.0_Chr3g0495771 Rosa chinensis HOM05D007528 ORTHO05D008503 1.6e-66 256.9 255 55.3
Nitab4.5_0000382g0060 Nicotiana tabacum HOM05D007528 ORTHO05D008503 2.1e-66 256.5 260 55.4
Peaxi162Scf00183g00712 Petunia axillaris HOM05D007528 ORTHO05D008503 3.6e-66 255.8 254 53.5
FvH4_1g29750 Fragaria vesca HOM05D007528 ORTHO05D008503 8.1e-66 254.6 253 54.2
arahy.Tifrunner.gnm1.ann1.ARK2IX Arachis hypogaea HOM05D007528 ORTHO05D008503 1.1e-65 254.2 226 56.6
PGR042G1749 Punica granatum HOM05D007528 ORTHO05D008503 1.4e-65 253.8 254 54.3
AL4G39090 Arabidopsis lyrata HOM05D007528 ORTHO05D008503 1.8e-65 253.4 248 52.4
TWI63G0885 Tripterygium wilfordii HOM05D007528 ORTHO05D008503 2.4e-65 253.1 243 53.1
vmacro12911 Vaccinium macrocarpon HOM05D007528 ORTHO05D008503 2.4e-65 253.1 243 57.2
Atru.chr8.936 Acer truncatum HOM05D007528 ORTHO05D008503 4.0e-65 252.3 253 53.4
FAN28G2175 Fragaria x ananassa HOM05D007528 ORTHO05D008503 5.2e-65 251.9 249 54.2
Lsat_1_v5_gn_8_83941 Lactuca sativa HOM05D007528 ORTHO05D008503 6.9e-65 251.5 229 53.3
FAN26G0883 Fragaria x ananassa HOM05D007528 ORTHO05D008503 8.9e-65 251.1 250 54.4
THA.LOC104803254 Tarenaya hassleriana HOM05D007528 ORTHO05D008503 8.9e-65 251.1 242 53.7
AT2G41120 Arabidopsis thaliana HOM05D007528 ORTHO05D008503 1.5e-64 250.4 247 51.0
Lj1g0006388 Lotus japonicus HOM05D007528 ORTHO05D008503 1.5e-64 250.4 261 51.3
Medtr7g088210 Medicago truncatula HOM05D007528 ORTHO05D008503 2.6e-64 249.6 223 57.8
Potri.006G025200 Populus trichocarpa HOM05D007528 ORTHO05D008503 4.4e-64 248.8 244 54.1
Solyc03g044630.2 Solanum lycopersicum HOM05D007528 ORTHO05D008503 4.4e-64 248.8 254 53.1
Carub.0004s2343 Capsella rubella HOM05D007528 ORTHO05D008503 5.8e-64 248.4 244 53.3
Ca_08340_v3 Cicer arietinum L. HOM05D007528 ORTHO05D008503 5.8e-64 248.4 250 53.6
Ciclev10012580m.g Citrus clementina HOM05D007528 ORTHO05D008503 1.7e-63 246.9 238 54.2
Aqoxy2G00067 Aquilegia oxysepala HOM05D007528 ORTHO05D008503 3.8e-63 245.7 205 57.6
PSO729G0248 Papaver somniferum HOM05D007528 ORTHO05D008503 3.8e-63 245.7 226 52.7
Phvul.001G109000 Phaseolus vulgaris HOM05D007528 ORTHO05D008503 4.9e-63 245.4 253 53.8
Psat3g082960 Pisum sativum HOM05D007528 ORTHO05D008503 6.4e-63 245.0 262 51.9
arahy.Tifrunner.gnm1.ann1.ZMQ31P Arachis hypogaea HOM05D007528 ORTHO05D008503 8.4e-63 244.6 173 63.6
Sp4g23430 Schrenkiella parvula HOM05D007528 ORTHO05D008503 8.4e-63 244.6 241 51.0
TPR.G23704 Trifolium pratense HOM05D007528 ORTHO05D008503 8.4e-63 244.6 173 64.7
ECA236G1579 Erigeron canadensis HOM05D007528 ORTHO05D008503 1.1e-62 244.2 176 63.1
CDE04G0261 Ceratophyllum demersum HOM05D007528 ORTHO05D008503 1.4e-62 243.8 196 56.6
MD12G1013500 Malus domestica HOM05D007528 ORTHO05D008503 1.4e-62 243.8 263 51.7
Haze_09241 Corylus avellana HOM05D007528 ORTHO05D006305 2.4e-62 243.0 199 59.8
Thhalv10017145m.g Eutrema salsugineum HOM05D007528 ORTHO05D008503 2.4e-62 243.0 243 51.4
A04p31360 Brassica napus HOM05D007528 ORTHO05D008503 5.4e-62 241.9 250 50.8
BraA04t18594Z Brassica rapa HOM05D007528 ORTHO05D008503 5.4e-62 241.9 197 57.4
Glyma.19G123400 Glycine max HOM05D007528 ORTHO05D008503 7.1e-62 241.5 254 53.5
BolC4t28382H Brassica oleracea HOM05D007528 ORTHO05D008503 2.7e-61 239.6 249 50.2
C04p68770 Brassica napus HOM05D007528 ORTHO05D008503 1.0e-60 237.7 249 50.2
EL10Ac5g11614 Beta vulgaris HOM05D007528 ORTHO05D008503 5.1e-60 235.3 203 57.6
ATR0307G122 Amborella trichopoda HOM05D007528 ORTHO05D008503 1.5e-59 233.8 210 53.8
ClCG10G016790 Citrullus lanatus HOM05D007528 ORTHO05D008503 1.9e-59 233.4 250 50.4
Aa31LG3G960 Aethionema arabicum HOM05D007528 ORTHO05D008503 3.3e-59 232.6 262 45.4
CsaV3_3G039560 Cucumis sativus L. HOM05D007528 ORTHO05D008503 9.6e-59 231.1 252 48.4
Prupe.7G017900 Prunus persica HOM05D007528 ORTHO05D008503 1.3e-58 230.7 182 62.6
Sed0015046 Sechium edule HOM05D007528 ORTHO05D008503 1.3e-58 230.7 244 50.0
SEGI_20851 Sequoiadendron giganteum HOM05D007528 ORTHO05D008503 6.9e-57 224.9 208 52.9
BcaNung05626 Brassica carinata HOM05D007528 ORTHO05D008503 2.6e-56 223.0 239 49.8
Mapoly0168s0009 Marchantia polymorpha HOM05D007528 ORTHO05D008503 3.2e-54 216.1 219 51.1
CARHR136210 Cardamine hirsuta HOM05D007528 ORTHO05D008503 2.1e-53 213.4 197 54.3
Os11g0130200 Oryza sativa ssp. japonica HOM05D007528 ORTHO05D008503 1.0e-52 211.1 189 55.0
Pp3c21_6860 Physcomitrium patens HOM05D007528 ORTHO05D008503 3.0e-52 209.5 190 52.6
Zm00001eb195960 Zea mays HOM05D007528 ORTHO05D008503 5.6e-51 205.3 195 51.8
AagrBONN_evm.TU.Sc2ySwM_344.4238 Anthoceros agrestis HOM05D007528 ORTHO05D008503 1.8e-49 200.3 181 54.7
SMO266G0100 Selaginella moellendorffii HOM05D007528 ORTHO05D008503 1.2e-48 197.6 183 48.6
CiPaw.13G169300 Carya illinoinensis HOM05D007528 ORTHO05D008503 4.2e-46 189.1 167 58.7
Rhsim10G0151800 Rhododendron simsii HOM05D007528 ORTHO05D008503 1.3e-44 184.1 118 72.0
CBR_g37627 Chara braunii HOM05D007528 ORTHO05D008503 6.9e-41 171.8 130 56.9
BcaC02g12850 Brassica carinata HOM05D007528 ORTHO05D008503 3.3e-35 152.9 148 54.1
CAN.G1129.33 Capsicum annuum HOM05D007528 ORTHO05D008503 1.3e-34 151.0 119 62.2
FAN19G0638 Fragaria x ananassa HOM05D007528 ORTHO05D008503 1.6e-34 150.6 125 60.8
Sopen03g008910 Solanum pennellii HOM05D007528 ORTHO05D008503 9.0e-33 144.8 119 61.3
unitig_21.g20663 Utricularia gibba HOM05D007528 ORTHO05D008503 1.0e-31 141.4 229 40.6
Glyma.03G119100 Glycine max HOM05D007528 ORTHO05D008503 5.9e-24 115.5 118 50.0
VMungo1383G2363 Vigna mungo HOM05D007528 ORTHO05D008503 2.2e-15 87.0 136 44.1
SEGI_18622 Sequoiadendron giganteum HOM05D007528 ORTHO05D008503 8.5e-15 85.1 88 47.7
Glyma.03G119000 Glycine max HOM05D007528 ORTHO05D008503 1.1e-14 84.7 122 43.4
Hma1.2p1_1327F.1_g275910 Hydrangea macrophylla HOM05D007528 ORTHO05D008503 4.4e-11 72.8 70 54.3
Cfa011867 Carpinus fangiana HOM05D007528 ORTHO05D008503 8.2e-10 68.6 72 51.4
FAN23G1305 Fragaria x ananassa HOM05D007528 ORTHO05D029410 2.0e-08 63.9 80 46.2
Pp3s30_790 Physcomitrium patens HOM05D002374 ORTHO05D003594 6.5e-07 58.9 93 37.6


User provided reference genes

Program Settings