Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g20980 Coffea canephora HOM05D004896 ORTHO05D006447 6.5e-108 394.0 196 100.0
Cc07_g00300 Coffea canephora HOM05D004896 ORTHO05D006447 3.9e-60 235.3 170 74.1
Actinidia18427 Actinidia chinensis HOM05D004896 ORTHO05D006447 3.2e-54 215.7 170 67.6
Aqoxy1G02023 Aquilegia oxysepala HOM05D004896 ORTHO05D006447 3.2e-54 215.7 170 67.6
Manes.15G155100 Manihot esculenta HOM05D004896 ORTHO05D006447 5.4e-54 214.9 170 67.6
Ah.12g059440 Amaranthus hybridus HOM05D004896 ORTHO05D006447 9.2e-54 214.2 177 63.8
Hma1.2p1_1484F.1_g286400 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 1.6e-53 213.4 170 67.1
Lj7A604T65 Lonicera japonica HOM05D004896 ORTHO05D006447 2.7e-53 212.6 170 67.1
Ciclev10015882m.g Citrus clementina HOM05D004896 ORTHO05D006447 4.6e-53 211.8 170 67.1
PGR142G1575 Punica granatum HOM05D004896 ORTHO05D006447 6.0e-53 211.5 170 65.9
MBI19_g04325_MAGBIO Magnolia biondii HOM05D004896 ORTHO05D006447 7.8e-53 211.1 170 65.9
CSS0017957 Camellia sinensis var. sinensis HOM05D004896 ORTHO05D006447 1.3e-52 210.3 170 67.1
SGA_v2.0_scaffold135G34930 Striga asiatica HOM05D004896 ORTHO05D006447 1.3e-52 210.3 170 64.7
Hma1.2p1_1407F.1_g281400 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 1.7e-52 209.9 170 66.5
Nn5g27187 Nelumbo nucifera HOM05D004896 ORTHO05D006447 1.7e-52 209.9 170 66.5
Rhsim08G0046600 Rhododendron simsii HOM05D004896 ORTHO05D006447 1.7e-52 209.9 170 64.7
Cpa.g.sc130.54 Carica papaya HOM05D004896 ORTHO05D006447 2.3e-52 209.5 170 65.3
Hma1.2p1_0383F.1_g140290 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 2.3e-52 209.5 170 66.5
GSVIVG01003974001 Vitis vinifera HOM05D004896 ORTHO05D006447 2.3e-52 209.5 169 66.3
vmacro18309 Vaccinium macrocarpon HOM05D004896 ORTHO05D006447 6.6e-52 208.0 170 65.3
ClCG05G013000 Citrullus lanatus HOM05D004896 ORTHO05D006447 8.7e-52 207.6 170 65.3
Solyc02g093690.3 Solanum lycopersicum HOM05D004896 ORTHO05D006447 8.7e-52 207.6 170 65.9
Sopen02g038330 Solanum pennellii HOM05D004896 ORTHO05D006447 8.7e-52 207.6 170 65.9
PGSC0003DMG400012644 Solanum tuberosum HOM05D004896 ORTHO05D006447 8.7e-52 207.6 170 65.9
Nitab4.5_0001031g0180 Nicotiana tabacum HOM05D004896 ORTHO05D006447 1.1e-51 207.2 170 65.3
AUR62030697 Chenopodium quinoa HOM05D004896 ORTHO05D006447 1.5e-51 206.8 170 64.1
Prupe.3G298100 Prunus persica HOM05D004896 ORTHO05D006447 1.5e-51 206.8 170 64.1
FvH4_6g52290 Fragaria vesca HOM05D004896 ORTHO05D006447 1.9e-51 206.5 170 64.1
Gohir.A05G342400 Gossypium hirsutum HOM05D004896 ORTHO05D006447 2.5e-51 206.1 179 62.6
Gorai.012G091200 Gossypium raimondii HOM05D004896 ORTHO05D006447 2.5e-51 206.1 179 62.6
QL02p073334 Quercus lobata HOM05D004896 ORTHO05D006447 2.5e-51 206.1 170 64.1
Sed0025595 Sechium edule HOM05D004896 ORTHO05D006447 2.5e-51 206.1 170 62.9
ECA246G3787 Erigeron canadensis HOM05D004896 ORTHO05D006447 3.3e-51 205.7 170 62.9
CAN.G473.48 Capsicum annuum HOM05D004896 ORTHO05D006447 4.3e-51 205.3 170 65.9
CiPaw.03G049000 Carya illinoinensis HOM05D004896 ORTHO05D006447 4.3e-51 205.3 170 63.5
Eucgr.I01701 Eucalyptus grandis HOM05D004896 ORTHO05D006447 4.3e-51 205.3 170 65.3
MSTRG.3120 Avicennia marina HOM05D004896 ORTHO05D006447 5.6e-51 204.9 170 64.1
CANSAT64G0177 Cannabis sativa HOM05D004896 ORTHO05D006447 5.6e-51 204.9 169 64.5
COL.COLO4_29242 Corchorus olitorius HOM05D004896 ORTHO05D006447 7.3e-51 204.5 180 62.2
FAN14G4168 Fragaria x ananassa HOM05D004896 ORTHO05D006447 9.6e-51 204.1 170 62.9
DCAR_021752 Daucus carota HOM05D004896 ORTHO05D006447 1.2e-50 203.8 170 62.9
Nitab4.5_0002158g0160 Nicotiana tabacum HOM05D004896 ORTHO05D006447 1.2e-50 203.8 170 64.7
TAR629G1306 Trochodendron aralioides HOM05D004896 ORTHO05D006447 1.2e-50 203.8 170 65.3
Thecc.04G026600 Theobroma cacao HOM05D004896 ORTHO05D006447 1.6e-50 203.4 170 64.1
Cfa007299 Carpinus fangiana HOM05D004896 ORTHO05D006447 2.1e-50 203.0 170 63.5
Migut.H00045 Erythranthe guttata HOM05D004896 ORTHO05D006447 2.8e-50 202.6 175 62.9
FAN05G4015 Fragaria x ananassa HOM05D004896 ORTHO05D006447 2.8e-50 202.6 170 62.9
arahy.Tifrunner.gnm1.ann1.10VWGS Arachis hypogaea HOM05D004896 ORTHO05D006447 3.6e-50 202.2 170 64.1
arahy.Tifrunner.gnm1.ann1.5ILH08 Arachis hypogaea HOM05D004896 ORTHO05D006447 3.6e-50 202.2 170 64.1
AUR62036338 Chenopodium quinoa HOM05D004896 ORTHO05D006447 4.7e-50 201.8 170 62.9
Duzib264G0232 Durio zibethinus HOM05D004896 ORTHO05D006447 4.7e-50 201.8 170 64.1
Ca_03861_v3 Cicer arietinum L. HOM05D004896 ORTHO05D006447 1.1e-49 200.7 177 60.5
MD09G1019000 Malus domestica HOM05D004896 ORTHO05D006447 1.1e-49 200.7 170 61.8
Psat3g168560 Pisum sativum HOM05D004896 ORTHO05D006447 1.1e-49 200.7 177 61.0
Peaxi162Scf00420g00251 Petunia axillaris HOM05D004896 ORTHO05D006447 1.4e-49 200.3 170 62.4
RcHm_v2.0_Chr2g0173821 Rosa chinensis HOM05D004896 ORTHO05D006447 1.4e-49 200.3 170 62.4
Hund14985 Selenicereus undatus HOM05D004896 ORTHO05D006447 1.4e-49 200.3 170 62.4
FAN09G1675 Fragaria x ananassa HOM05D004896 ORTHO05D006447 1.8e-49 199.9 170 62.4
Lj1g0027814 Lotus japonicus HOM05D004896 ORTHO05D006447 2.4e-49 199.5 170 62.9
TWI56G0223 Tripterygium wilfordii HOM05D004896 ORTHO05D006447 2.4e-49 199.5 169 63.9
FvH4_6g52310 Fragaria vesca HOM05D004896 ORTHO05D006447 4.0e-49 198.7 170 61.8
FAN02G3298 Fragaria x ananassa HOM05D004896 ORTHO05D006447 5.3e-49 198.4 170 61.8
CsaV3_3G027540 Cucumis sativus L. HOM05D004896 ORTHO05D006447 6.9e-49 198.0 170 62.4
Glyma.16G066000 Glycine max HOM05D004896 ORTHO05D006447 6.9e-49 198.0 170 61.8
VMungo1080G0372 Vigna mungo HOM05D004896 ORTHO05D006447 6.9e-49 198.0 170 62.4
EL10Ac9g21007 Beta vulgaris HOM05D004896 ORTHO05D006447 9.0e-49 197.6 170 61.2
Phvul.008G145713 Phaseolus vulgaris HOM05D004896 ORTHO05D006447 9.0e-49 197.6 170 61.8
Zm00001eb329190 Zea mays HOM05D004896 ORTHO05D006447 1.2e-48 197.2 170 61.8
CiPaw.04G032200 Carya illinoinensis HOM05D004896 ORTHO05D006447 1.5e-48 196.8 163 64.4
EL10Ac5g10496 Beta vulgaris HOM05D004896 ORTHO05D006447 2.6e-48 196.1 170 61.2
HanXRQChr17g0549471 Helianthus annuus HOM05D004896 ORTHO05D006447 3.4e-48 195.7 170 61.2
Medtr0018s0290 Medicago truncatula HOM05D004896 ORTHO05D006447 3.4e-48 195.7 177 59.3
Haze_14796 Corylus avellana HOM05D004896 ORTHO05D006447 4.4e-48 195.3 166 62.7
Potri.001G338200 Populus trichocarpa HOM05D004896 ORTHO05D006447 4.4e-48 195.3 170 60.6
ATR0099G063 Amborella trichopoda HOM05D004896 ORTHO05D006447 5.8e-48 194.9 170 60.0
Gohir.D04G080440 Gossypium hirsutum HOM05D004896 ORTHO05D006447 5.8e-48 194.9 162 64.8
Os07g0644000 Oryza sativa ssp. japonica HOM05D004896 ORTHO05D006447 7.6e-48 194.5 174 60.9
Ca_01399_v3 Cicer arietinum L. HOM05D004896 ORTHO05D006447 2.9e-47 192.6 177 58.8
Lsat_1_v5_gn_0_30781 Lactuca sativa HOM05D004896 ORTHO05D006447 3.8e-47 192.2 170 59.4
FAN14G0298 Fragaria x ananassa HOM05D004896 ORTHO05D006447 8.4e-47 191.0 203 56.2
PSO675G8471 Papaver somniferum HOM05D004896 ORTHO05D006447 1.1e-46 190.7 170 60.0
TPR.G1112 Trifolium pratense HOM05D004896 ORTHO05D006447 1.4e-46 190.3 177 57.1
Lalb_Chr14g0362991 Lupinus albus HOM05D004896 ORTHO05D006447 4.2e-46 188.7 170 61.2
PSO541G0959 Papaver somniferum HOM05D004896 ORTHO05D006447 5.4e-46 188.3 170 59.4
unitig_0.g536 Utricularia gibba HOM05D004896 ORTHO05D006447 5.4e-46 188.3 170 60.0
Sed0012039 Sechium edule HOM05D004896 ORTHO05D006447 1.2e-45 187.2 169 60.4
CSS0036459 Camellia sinensis var. sinensis HOM05D004896 ORTHO05D006447 2.7e-45 186.0 222 51.4
Dinv33394 Davidia involucrata HOM05D004896 ORTHO05D006447 2.7e-45 186.0 162 61.7
THA.LOC104825307 Tarenaya hassleriana HOM05D004896 ORTHO05D006447 1.0e-44 184.1 170 60.0
CARHR261290 Cardamine hirsuta HOM05D004896 ORTHO05D006447 1.7e-44 183.3 170 58.8
BcaB06g27542 Brassica carinata HOM05D004896 ORTHO05D006447 3.0e-44 182.6 170 57.1
A04p13700 Brassica napus HOM05D004896 ORTHO05D006447 3.0e-44 182.6 170 57.1
C04p47490 Brassica napus HOM05D004896 ORTHO05D006447 3.0e-44 182.6 170 57.1
BolC4t26350H Brassica oleracea HOM05D004896 ORTHO05D006447 3.0e-44 182.6 170 57.1
BraA04t17030Z Brassica rapa HOM05D004896 ORTHO05D006447 3.0e-44 182.6 170 57.1
CDE07G0249 Ceratophyllum demersum HOM05D004896 ORTHO05D006447 3.0e-44 182.6 169 58.0
Carub.0007s3482 Capsella rubella HOM05D004896 ORTHO05D006447 8.7e-44 181.0 170 57.6
HPP92_020467 Vanilla planifolia HOM05D004896 ORTHO05D006447 8.7e-44 181.0 170 56.5
Thhalv10027828m.g Eutrema salsugineum HOM05D004896 ORTHO05D006447 4.3e-43 178.7 170 56.5
AL7G49080 Arabidopsis lyrata HOM05D004896 ORTHO05D006447 9.6e-43 177.6 170 56.5
Aa31LG9G960 Aethionema arabicum HOM05D004896 ORTHO05D006447 1.6e-42 176.8 170 55.3
HPP92_026167 Vanilla planifolia HOM05D004896 ORTHO05D006447 1.6e-42 176.8 170 55.3
Sp7g01200 Schrenkiella parvula HOM05D004896 ORTHO05D006447 2.1e-42 176.4 170 55.9
AT5G40660 Arabidopsis thaliana HOM05D004896 ORTHO05D006447 6.2e-42 174.9 170 55.9
RcHm_v2.0_Chr2g0174241 Rosa chinensis HOM05D004896 ORTHO05D006447 9.0e-41 171.0 183 54.1
Sabra16G0218900 Salix brachista HOM05D004896 ORTHO05D006447 5.8e-40 168.3 245 42.4
SHI03827 Sapria himalayana HOM05D004896 ORTHO05D006447 3.8e-39 165.6 161 52.8
Atru.chr6.2473 Acer truncatum HOM05D004896 ORTHO05D006447 1.3e-36 157.1 144 59.0
EL10Ac5g11826 Beta vulgaris HOM05D004896 ORTHO05D006447 1.3e-36 157.1 145 58.6
Sc03g0007130 Simmondsia chinensis HOM05D004896 ORTHO05D006447 8.7e-36 154.5 144 59.0
MELO3C014823.2 Cucumis melo HOM05D004896 ORTHO05D006447 5.6e-35 151.8 144 59.7
Hma1.2p1_1484F.1_g286403 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 7.4e-35 151.4 145 58.6
Hma1.2p1_1484F.1_g286440 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 7.4e-35 151.4 145 58.6
SEGI_10618 Sequoiadendron giganteum HOM05D004896 ORTHO05D006447 1.8e-33 146.7 177 46.3
Oeu064389.1 Olea europaea HOM05D004896 ORTHO05D006447 2.6e-32 142.9 135 57.8
Duzib147G0160 Durio zibethinus HOM05D004896 ORTHO05D006447 8.4e-31 137.9 120 60.0
MD17G1019600 Malus domestica HOM05D004896 ORTHO05D006447 2.1e-29 133.3 117 59.0
SGA_v2.0_scaffold18G08247 Striga asiatica HOM05D004896 ORTHO05D006447 1.0e-28 131.0 116 59.5
SMO200G0187 Selaginella moellendorffii HOM05D004896 ORTHO05D006447 2.5e-27 126.3 172 41.3
MBI19_g02443_MAGBIO Magnolia biondii HOM05D004896 ORTHO05D006447 1.4e-25 120.6 72 86.1
Atru.chr3.2666 Acer truncatum HOM05D004896 ORTHO05D006447 6.9e-25 118.2 136 54.4
CBR_g4059 Chara braunii HOM05D004896 ORTHO05D006447 6.9e-25 118.2 168 37.5
Mapoly0004s0068 Marchantia polymorpha HOM05D004896 ORTHO05D006447 2.6e-24 116.3 168 39.9
Pp3c2_19250 Physcomitrium patens HOM05D004896 ORTHO05D006447 2.9e-23 112.8 170 37.1
AagrBONN_evm.TU.Sc2ySwM_362.2811 Anthoceros agrestis HOM05D004896 ORTHO05D006447 4.9e-23 112.1 174 37.9
PRCOL_00001693 Prasinoderma coloniale HOM05D004896 ORTHO05D006447 1.8e-17 93.6 173 34.7
Glyma.19G080702 Glycine max HOM05D004896 ORTHO05D006447 1.0e-15 87.8 95 51.6
Ah.07g205180 Amaranthus hybridus HOM05D004896 ORTHO05D060504 2.3e-12 76.6 133 39.8
Hma1.2p1_1484F.1_g286430 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 3.9e-12 75.9 46 73.9
Nitab4.5_0002158g0260 Nicotiana tabacum HOM05D002474 ORTHO05D007142 2.0e-11 73.6 45 77.8
Actinidia16947 Actinidia chinensis HOM05D004896 ORTHO05D006447 5.7e-11 72.0 45 75.6
Atru.chr4.450 Acer truncatum HOM05D004896 ORTHO05D006447 1.7e-10 70.5 45 71.1
MCO13G572 Micromonas commoda HOM05D004896 ORTHO05D006447 2.8e-10 69.7 174 29.9
Cre17.g726250 Chlamydomonas reinhardtii HOM05D004896 ORTHO05D006447 2.9e-07 59.7 163 26.4


User provided reference genes

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