Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 1.8e-75 285.8 142 100.0
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 1.2e-66 256.5 142 90.8
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 2.3e-54 215.7 127 81.1
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 3.9e-54 214.9 127 81.1
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 5.1e-54 214.5 126 80.2
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 6.7e-54 214.2 132 76.5
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 1.9e-53 212.6 132 75.8
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 5.7e-53 211.1 128 79.7
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 5.7e-53 211.1 129 79.1
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 1.3e-52 209.9 129 77.5
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 1.6e-52 209.5 129 75.2
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 2.2e-52 209.1 137 75.2
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 2.2e-52 209.1 123 82.9
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 2.8e-52 208.8 127 78.0
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 2.8e-52 208.8 130 72.3
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 2.8e-52 208.8 136 76.5
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 2.8e-52 208.8 122 84.4
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 1.4e-51 206.5 128 77.3
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 3.1e-51 205.3 123 80.5
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 5.3e-51 204.5 133 73.7
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 6.9e-51 204.1 123 79.7
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 1.2e-50 203.4 123 80.5
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 1.2e-50 203.4 140 72.9
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 1.5e-50 203.0 122 79.5
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 3.4e-50 201.8 130 73.1
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 3.4e-50 201.8 136 72.8
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 4.5e-50 201.4 129 72.9
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 5.9e-50 201.1 128 74.2
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 1.0e-49 200.3 137 71.5
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 1.0e-49 200.3 127 72.4
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 1.3e-49 199.9 130 73.8
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 1.3e-49 199.9 130 73.8
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 1.3e-49 199.9 129 75.2
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 1.7e-49 199.5 123 79.7
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 2.2e-49 199.1 129 72.9
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 2.2e-49 199.1 122 80.3
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 2.2e-49 199.1 122 80.3
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 2.2e-49 199.1 122 80.3
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 2.2e-49 199.1 129 75.2
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 2.2e-49 199.1 129 76.0
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 3.8e-49 198.4 124 76.6
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 3.8e-49 198.4 126 76.2
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 5.0e-49 198.0 125 75.2
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 1.1e-48 196.8 126 73.8
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 1.1e-48 196.8 137 67.9
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 1.4e-48 196.4 132 73.5
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.4e-48 196.4 123 77.2
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 1.4e-48 196.4 126 71.4
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 1.4e-48 196.4 126 73.8
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 1.9e-48 196.1 122 77.9
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 3.2e-48 195.3 126 73.8
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 4.2e-48 194.9 129 73.6
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 4.2e-48 194.9 123 75.6
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 4.2e-48 194.9 119 80.7
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 5.5e-48 194.5 122 76.2
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 7.2e-48 194.1 126 73.8
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 7.2e-48 194.1 122 76.2
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 7.2e-48 194.1 122 76.2
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 9.4e-48 193.7 122 77.0
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.2e-47 193.4 122 77.0
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 1.2e-47 193.4 127 71.7
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 2.1e-47 192.6 122 77.9
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 6.1e-47 191.0 121 74.4
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 6.1e-47 191.0 136 69.1
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 1.4e-46 189.9 123 74.8
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 1.8e-46 189.5 124 75.0
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 2.3e-46 189.1 123 73.2
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 3.9e-46 188.3 127 70.1
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 5.1e-46 188.0 128 69.5
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 8.8e-46 187.2 123 71.5
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 1.5e-45 186.4 123 71.5
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 1.5e-45 186.4 145 63.4
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 2.0e-45 186.0 127 70.9
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 4.4e-45 184.9 127 71.7
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 5.7e-45 184.5 127 66.9
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 5.7e-45 184.5 126 73.0
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 7.4e-45 184.1 127 70.1
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 2.2e-44 182.6 120 72.5
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 2.8e-44 182.2 119 71.4
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 8.2e-44 180.6 126 69.8
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 1.4e-43 179.9 113 75.2
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 1.4e-43 179.9 127 69.3
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 2.4e-43 179.1 122 70.5
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 2.4e-43 179.1 120 68.3
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 4.1e-43 178.3 124 68.5
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 4.1e-43 178.3 128 68.8
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 4.1e-43 178.3 127 65.4
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 9.1e-43 177.2 127 63.8
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 9.1e-43 177.2 126 63.5
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 1.5e-42 176.4 127 67.7
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 2.0e-42 176.0 127 63.8
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 2.6e-42 175.6 125 64.0
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 2.6e-42 175.6 122 66.4
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 4.5e-42 174.9 134 63.4
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 4.5e-42 174.9 121 66.9
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 5.9e-42 174.5 120 67.5
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 1.3e-41 173.3 127 68.5
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 2.9e-41 172.2 126 61.1
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 2.9e-41 172.2 123 66.7
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 5.0e-41 171.4 137 59.1
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 8.5e-41 170.6 122 68.0
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 8.5e-41 170.6 123 65.0
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 1.1e-40 170.2 109 78.9
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 2.5e-40 169.1 136 59.6
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 2.5e-40 169.1 137 58.4
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 3.2e-40 168.7 123 63.4
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 3.2e-40 168.7 123 65.0
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 9.4e-40 167.2 132 58.3
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 1.2e-39 166.8 128 60.9
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 2.1e-39 166.0 113 71.7
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 2.1e-39 166.0 119 64.7
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 2.7e-39 165.6 123 64.2
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 4.7e-39 164.9 122 62.3
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 7.9e-39 164.1 133 57.9
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.0e-38 163.7 105 76.2
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 1.0e-38 163.7 123 64.2
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 2.3e-38 162.5 116 67.2
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 5.2e-38 161.4 119 63.9
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 8.8e-38 160.6 127 65.4
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 1.5e-37 159.8 101 76.2
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 1.5e-37 159.8 101 76.2
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 2.6e-37 159.1 138 55.8
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 2.6e-37 159.1 109 66.1
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 9.7e-37 157.1 138 58.7
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 1.7e-36 156.4 117 64.1
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 8.2e-36 154.1 131 55.7
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 1.8e-35 152.9 133 59.4
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 5.3e-35 151.4 124 60.5
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 9.1e-35 150.6 120 60.0
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 1.6e-34 149.8 120 60.8
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 3.5e-34 148.7 128 63.3
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 4.5e-34 148.3 124 54.0
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 5.9e-34 147.9 118 60.2
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 5.9e-34 147.9 118 60.2
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 5.9e-34 147.9 118 60.2
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 5.9e-34 147.9 119 56.3
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 5.9e-34 147.9 119 59.7
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 7.7e-34 147.5 128 57.0
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 1.0e-33 147.1 128 56.2
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 1.0e-33 147.1 128 56.2
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 1.3e-33 146.7 124 58.9
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 1.7e-33 146.4 116 59.5
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 2.2e-33 146.0 118 59.3
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 3.8e-33 145.2 128 56.2
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 2.5e-32 142.5 99 69.7
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 3.2e-32 142.1 121 57.0
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 4.2e-32 141.7 125 55.2
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 9.4e-32 140.6 123 56.1
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 9.4e-32 140.6 118 57.6
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 9.4e-32 140.6 118 57.6
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 2.7e-31 139.0 121 54.5
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 3.6e-31 138.7 123 55.3
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 3.6e-31 138.7 125 53.6
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 4.7e-31 138.3 123 56.9
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 1.8e-30 136.3 124 54.0
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 3.0e-30 135.6 128 50.0
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 1.7e-28 129.8 119 52.9
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 9.4e-24 114.0 79 67.1
Actinidia06188 Actinidia chinensis HOM05D003887 ORTHO05D004523 8.0e-23 110.9 64 78.1
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 4.8e-20 101.7 82 70.7
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 1.8e-19 99.8 64 73.4
PGSC0003DMG400007623 Solanum tuberosum HOM05D003887 ORTHO05D004523 2.4e-19 99.4 67 70.1
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 4.1e-19 98.6 65 70.8
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 4.1e-19 98.6 65 70.8
Cre02.g097450 Chlamydomonas reinhardtii HOM05D003887 ORTHO05D004523 2.0e-18 96.3 112 42.0
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 2.7e-18 95.9 65 75.4
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 1.0e-17 94.0 62 75.8
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 3.8e-17 92.0 55 70.9
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 8.6e-17 90.9 62 72.6
Gohir.D09G062150 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.1e-15 86.3 53 73.6
Gorai.006G076900 Gossypium raimondii HOM05D003887 ORTHO05D004523 1.4e-14 83.6 64 64.1
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 2.3e-14 82.8 121 38.8
Mapoly0121s0041 Marchantia polymorpha HOM05D003887 ORTHO05D004523 2.3e-14 82.8 68 52.9
Actinidia37764 Actinidia chinensis HOM05D001091 ORTHO05D001020 1.2e-13 80.5 58 70.7
Lj3A241T19 Lonicera japonica HOM05D003887 ORTHO05D004523 1.3e-12 77.0 84 50.0
Aa31LG3G5240 Aethionema arabicum HOM05D003887 ORTHO05D004523 2.7e-10 69.3 66 56.1
AT3G21730 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 3.3e-08 62.4 63 47.6
Nitab4.5_0006280g0090 Nicotiana tabacum HOM05D003887 ORTHO05D048295 2.8e-07 59.3 35 74.3
HanXRQChr02g0053341 Helianthus annuus HOM05D003887 ORTHO05D048295 8.0e-07 57.8 34 70.6


User provided reference genes

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