Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g20720 Coffea canephora HOM05D004259 ORTHO05D005014 2.2e-64 248.8 128 100.0
Cc10_g04310 Coffea canephora HOM05D004259 ORTHO05D005014 3.6e-30 135.2 104 72.1
Cc00_g16720 Coffea canephora HOM05D004259 ORTHO05D005014 2.3e-29 132.5 103 69.9
Thecc.05G042500 Theobroma cacao HOM05D004259 ORTHO05D005014 2.2e-24 115.9 107 63.6
MSTRG.24327 Avicennia marina HOM05D004259 ORTHO05D005014 1.1e-23 113.6 104 61.5
Lj3C736T6 Lonicera japonica HOM05D004259 ORTHO05D005014 1.1e-23 113.6 104 60.6
unitig_26.g10027 Utricularia gibba HOM05D004259 ORTHO05D005014 3.2e-23 112.1 104 61.5
SGA_v2.0_scaffold204G41641 Striga asiatica HOM05D004259 ORTHO05D005014 5.5e-23 111.3 104 59.6
Potri.003G094800 Populus trichocarpa HOM05D004259 ORTHO05D005014 7.2e-23 110.9 104 60.6
Duzib128G0657 Durio zibethinus HOM05D004259 ORTHO05D005014 9.4e-23 110.5 104 60.6
Oeu018211.1 Olea europaea HOM05D004259 ORTHO05D005014 9.4e-23 110.5 104 58.7
Sed0023883 Sechium edule HOM05D004259 ORTHO05D005014 9.4e-23 110.5 106 61.3
Atru.chr8.1940 Acer truncatum HOM05D004259 ORTHO05D005014 1.6e-22 109.8 104 57.7
Thhalv10016846m.g Eutrema salsugineum HOM05D004259 ORTHO05D005014 1.6e-22 109.8 104 58.7
Sabra03G0064000 Salix brachista HOM05D004259 ORTHO05D005014 2.1e-22 109.4 104 60.6
CiPaw.15G061500 Carya illinoinensis HOM05D004259 ORTHO05D005014 2.7e-22 109.0 104 60.6
CsaV3_2G028020 Cucumis sativus L. HOM05D004259 ORTHO05D005014 2.7e-22 109.0 104 60.6
Manes.08G078200 Manihot esculenta HOM05D004259 ORTHO05D005014 2.7e-22 109.0 104 59.6
Sabra11G0061200 Salix brachista HOM05D004259 ORTHO05D005014 2.7e-22 109.0 104 60.6
Ciclev10012027m.g Citrus clementina HOM05D004259 ORTHO05D005014 3.6e-22 108.6 104 59.6
FAN20G1942 Fragaria x ananassa HOM05D004259 ORTHO05D005014 3.6e-22 108.6 104 58.7
BraA05t19805Z Brassica rapa HOM05D004259 ORTHO05D005014 4.7e-22 108.2 104 58.7
Sp4g19910 Schrenkiella parvula HOM05D004259 ORTHO05D005014 4.7e-22 108.2 104 58.7
THA.LOC104806568 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 4.7e-22 108.2 104 58.7
FvH4_2g34610 Fragaria vesca HOM05D004259 ORTHO05D005014 6.1e-22 107.8 104 57.7
Gohir.D11G345100 Gossypium hirsutum HOM05D004259 ORTHO05D005014 6.1e-22 107.8 104 57.7
Gorai.007G375500 Gossypium raimondii HOM05D004259 ORTHO05D005014 6.1e-22 107.8 104 57.7
FAN15G2861 Fragaria x ananassa HOM05D001625 ORTHO05D005014 1.8e-21 106.3 104 57.7
Gohir.A11G326200 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.8e-21 106.3 104 56.7
Phvul.001G021100 Phaseolus vulgaris HOM05D004259 ORTHO05D005014 1.8e-21 106.3 104 59.6
SalBow2G1152 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.3e-21 105.9 104 57.7
SalBow2G2463 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.3e-21 105.9 104 57.7
SalBow2G2610 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.3e-21 105.9 104 57.7
SalBow3G4106 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.3e-21 105.9 104 57.7
vmacro04457 Vaccinium macrocarpon HOM05D004259 ORTHO05D005014 2.3e-21 105.9 103 57.3
BcaC02g11869 Brassica carinata HOM05D004259 ORTHO05D005014 3.0e-21 105.5 104 57.7
C04p10400 Brassica napus HOM05D004259 ORTHO05D005014 3.0e-21 105.5 104 57.7
BolC4t22638H Brassica oleracea HOM05D004259 ORTHO05D005014 3.0e-21 105.5 104 57.7
BcaB02g09273 Brassica carinata HOM05D004259 ORTHO05D005014 4.0e-21 105.1 104 56.7
A05p08400 Brassica napus HOM05D004259 ORTHO05D005014 4.0e-21 105.1 104 57.7
MELO3C010882.2 Cucumis melo HOM05D004259 ORTHO05D005014 4.0e-21 105.1 104 58.7
Migut.N02703 Erythranthe guttata HOM05D004259 ORTHO05D005014 4.0e-21 105.1 104 56.7
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla HOM05D004259 ORTHO05D005014 4.0e-21 105.1 104 57.7
Prupe.1G438300 Prunus persica HOM05D004259 ORTHO05D005014 4.0e-21 105.1 103 59.2
TWI53G0519 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 4.0e-21 105.1 104 56.7
Cpa.g.sc973.4 Carica papaya HOM05D004259 ORTHO05D005014 6.7e-21 104.4 104 56.7
AT2G37560 Arabidopsis thaliana HOM05D004259 ORTHO05D005014 8.8e-21 104.0 104 54.8
Peaxi162Scf00162g00029 Petunia axillaris HOM05D004259 ORTHO05D005014 8.8e-21 104.0 104 54.8
CANSAT01G2810 Cannabis sativa HOM05D004259 ORTHO05D005014 1.1e-20 103.6 104 53.8
Haze_17543 Corylus avellana HOM05D004259 ORTHO05D005014 1.1e-20 103.6 104 57.7
Haze_17552 Corylus avellana HOM05D004259 ORTHO05D005014 1.1e-20 103.6 104 57.7
Nitab4.5_0002664g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.1e-20 103.6 104 54.8
RcHm_v2.0_Chr6g0307691 Rosa chinensis HOM05D004259 ORTHO05D005014 1.1e-20 103.6 104 56.7
SalBow2G0695 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.1e-20 103.6 104 56.7
SalBow2G2012 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.1e-20 103.6 104 56.7
CARHR132030 Cardamine hirsuta HOM05D004259 ORTHO05D005014 1.5e-20 103.2 104 55.8
Rhsim10G0028100 Rhododendron simsii HOM05D004259 ORTHO05D005014 1.5e-20 103.2 102 53.9
Lsat_1_v5_gn_1_20280 Lactuca sativa HOM05D004259 ORTHO05D005014 2.0e-20 102.8 104 56.7
VMungo0647G0522 Vigna mungo HOM05D004259 ORTHO05D005014 2.0e-20 102.8 104 58.7
Peaxi162Scf00929g00211 Petunia axillaris HOM05D004259 ORTHO05D005014 2.6e-20 102.4 104 55.8
Sc07g0003460 Simmondsia chinensis HOM05D004259 ORTHO05D005014 2.6e-20 102.4 104 52.9
CSS0003524 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 3.3e-20 102.1 104 56.7
Lalb_Chr19g0129351 Lupinus albus HOM05D004259 ORTHO05D005014 3.3e-20 102.1 104 56.7
PSO541G1765 Papaver somniferum HOM05D004259 ORTHO05D005014 3.3e-20 102.1 105 54.3
Peaxi162Scf00003g02311 Petunia axillaris HOM05D004259 ORTHO05D005014 3.3e-20 102.1 96 58.3
CAN.G65.190 Capsicum annuum HOM05D004259 ORTHO05D005014 4.4e-20 101.7 104 54.8
ClCG08G015740 Citrullus lanatus HOM05D004259 ORTHO05D005014 5.7e-20 101.3 116 55.2
GSVIVG01009522001 Vitis vinifera HOM05D004259 ORTHO05D005014 5.7e-20 101.3 104 54.8
Carub.0004s1948 Capsella rubella HOM05D004259 ORTHO05D005014 7.4e-20 100.9 104 53.8
Cfa018528 Carpinus fangiana HOM05D004259 ORTHO05D005014 7.4e-20 100.9 104 56.7
MD08G1103300 Malus domestica HOM05D004259 ORTHO05D005014 7.4e-20 100.9 104 55.8
Glyma.14G082100 Glycine max HOM05D004259 ORTHO05D005014 9.7e-20 100.5 105 57.1
Nitab4.5_0000111g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 9.7e-20 100.5 102 51.0
CSS0037728 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 1.7e-19 99.8 104 55.8
Nitab4.5_0002045g0130 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.7e-19 99.8 104 52.9
PSO675G0522 Papaver somniferum HOM05D004259 ORTHO05D005014 1.7e-19 99.8 105 54.3
PGSC0003DMG400027003 Solanum tuberosum HOM05D004259 ORTHO05D005014 1.7e-19 99.8 105 54.3
PGR031G2227 Punica granatum HOM05D004259 ORTHO05D005014 2.2e-19 99.4 105 56.2
AL4G34050 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 2.8e-19 99.0 104 54.8
HanXRQChr04g0103531 Helianthus annuus HOM05D004259 ORTHO05D005014 2.8e-19 99.0 104 56.7
PSO339G6255 Papaver somniferum HOM05D004259 ORTHO05D005014 2.8e-19 99.0 105 54.3
Ca_01811_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 3.7e-19 98.6 104 56.7
Ca_29610_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 3.7e-19 98.6 104 56.7
MBI02_g17334_MAGBIO Magnolia biondii HOM05D004259 ORTHO05D005014 3.7e-19 98.6 104 54.8
Aqoxy7G01016 Aquilegia oxysepala HOM05D004259 ORTHO05D005014 4.8e-19 98.2 104 54.8
Medtr1g019770 Medicago truncatula HOM05D004259 ORTHO05D005014 4.8e-19 98.2 104 56.7
Sopen06g029870 Solanum pennellii HOM05D004259 ORTHO05D005014 4.8e-19 98.2 105 53.3
Ah.05g168820 Amaranthus hybridus HOM05D001625 ORTHO05D005014 6.3e-19 97.8 120 48.3
EL10Ac3g06655 Beta vulgaris HOM05D004259 ORTHO05D005014 6.3e-19 97.8 104 52.9
Solyc06g073510.3 Solanum lycopersicum HOM05D004259 ORTHO05D005014 6.3e-19 97.8 105 52.4
TPR.G17553 Trifolium pratense HOM05D004259 ORTHO05D005014 8.2e-19 97.4 104 54.8
Nn1g05830 Nelumbo nucifera HOM05D004259 ORTHO05D005014 1.1e-18 97.1 104 53.8
AUR62039303 Chenopodium quinoa HOM05D004259 ORTHO05D005014 1.4e-18 96.7 104 51.9
THA.LOC104809222 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 1.4e-18 96.7 106 54.7
AUR62022427 Chenopodium quinoa HOM05D004259 ORTHO05D005014 1.8e-18 96.3 104 51.9
arahy.Tifrunner.gnm1.ann1.1PWX74 Arachis hypogaea HOM05D004259 ORTHO05D005014 2.4e-18 95.9 105 55.2
arahy.Tifrunner.gnm1.ann1.63NC9C Arachis hypogaea HOM05D004259 ORTHO05D005014 2.4e-18 95.9 105 55.2
Rhsim10G0028600 Rhododendron simsii HOM05D004259 ORTHO05D005014 3.1e-18 95.5 105 52.4
Eucgr.F00239 Eucalyptus grandis HOM05D004259 ORTHO05D005014 4.1e-18 95.1 104 53.8
COL.COLO4_14836 Corchorus olitorius HOM05D004259 ORTHO05D005014 5.3e-18 94.7 101 55.4
TAR376G0692 Trochodendron aralioides HOM05D004259 ORTHO05D005014 5.3e-18 94.7 104 52.9
Lj5g0003666 Lotus japonicus HOM05D004259 ORTHO05D005014 2.6e-17 92.4 104 53.8
HPP92_027220 Vanilla planifolia HOM05D004259 ORTHO05D005014 2.6e-17 92.4 105 51.4
ATR0100G023 Amborella trichopoda HOM05D004259 ORTHO05D005014 3.5e-17 92.0 104 51.9
Psat6g012600 Pisum sativum HOM05D004259 ORTHO05D005014 1.3e-16 90.1 104 51.9
FAN27G2417 Fragaria x ananassa HOM05D004259 ORTHO05D005014 2.9e-16 89.0 94 54.3
Cc11_g02680 Coffea canephora HOM05D004259 ORTHO05D005014 8.5e-16 87.4 50 90.0
QL02p005360 Quercus lobata HOM05D004259 ORTHO05D005014 8.5e-16 87.4 160 38.8
CDE10G1325 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 1.1e-15 87.0 104 51.0
Gohir.D12G080700 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.5e-15 85.9 72 63.9
Gorai.011G277900 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.5e-15 85.9 72 63.9
Os03g0184700 Oryza sativa ssp. japonica HOM05D004259 ORTHO05D005014 3.6e-14 82.0 108 45.4
Zm00001eb248940 Zea mays HOM05D004259 ORTHO05D005014 1.0e-13 80.5 109 44.0
AL4G34080 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 2.3e-13 79.3 91 52.7
Gohir.D01G124400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 5.2e-13 78.2 57 68.4
Gohir.D03G074850 Gossypium hirsutum HOM05D004259 ORTHO05D005014 5.2e-13 78.2 57 68.4
TWI53G0792 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 6.8e-13 77.8 72 59.7
Gohir.D02G123750 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.0e-12 76.3 57 66.7
Gohir.D09G120150 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.0e-12 76.3 57 66.7
Gorai.005G130400 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.0e-12 76.3 57 66.7
Gohir.D10G134400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.4e-12 75.5 57 64.9
Gorai.008G056700 Gossypium raimondii HOM05D004259 ORTHO05D005014 4.4e-12 75.1 57 66.7
Gorai.004G133100 Gossypium raimondii HOM05D004259 ORTHO05D005014 9.8e-12 73.9 57 64.9
Gohir.D04G089650 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.3e-11 73.6 57 66.7
Gorai.012G099900 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.2e-11 72.8 57 63.2
Aa31sc112G60 Aethionema arabicum HOM05D004259 ORTHO05D005014 4.8e-11 71.6 57 63.2
RcHm_v2.0_Chr6g0307531 Rosa chinensis HOM05D004259 ORTHO05D005014 3.1e-10 68.9 101 42.6
Pp3c18_14740 Physcomitrium patens HOM05D004259 ORTHO05D005014 1.6e-09 66.6 100 39.0
ECA247G2793 Erigeron canadensis HOM05D004259 ORTHO05D005014 2.0e-09 66.2 74 52.7
Gohir.D09G088725 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.0e-09 66.2 44 77.3
AagrBONN_evm.TU.Sc2ySwM_344.5209 Anthoceros agrestis HOM05D004259 ORTHO05D005014 2.7e-09 65.9 111 37.8
Nitab4.5_0004918g0050 Nicotiana tabacum HOM05D004259 ORTHO05D005014 7.7e-09 64.3 74 50.0
SMO147G0302 Selaginella moellendorffii HOM05D004259 ORTHO05D005014 7.7e-09 64.3 95 40.0
Gohir.D02G104501 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.0e-08 63.9 83 45.8
Gorai.005G118700 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.3e-08 63.5 83 45.8
Cc00_g00370 Coffea canephora HOM05D004259 ORTHO05D005014 5.0e-08 61.6 40 77.5
Dinv39327 Davidia involucrata HOM05D004259 ORTHO05D005014 5.0e-08 61.6 74 50.0
Sabra15G0136400 Salix brachista HOM05D004259 ORTHO05D004947 1.1e-07 60.5 56 62.5
SEGI_22221 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 1.9e-07 59.7 57 54.4
Gorai.006G043100 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.2e-07 58.9 86 46.5
MD15G1084600 Malus domestica HOM05D004259 ORTHO05D005014 2.7e-06 55.8 120 36.7
Cc01_g09720 Coffea canephora HOM05D004259 ORTHO05D005014 4.7e-06 55.1 31 87.1


User provided reference genes

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