Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g20460 Coffea canephora HOM05D005273 ORTHO05D006195 3.3e-217 758.1 374 100.0
Solyc02g072105.1 Solanum lycopersicum HOM05D005273 ORTHO05D006195 5.1e-178 627.9 377 80.6
MSTRG.21306 Avicennia marina HOM05D005273 ORTHO05D006195 4.3e-177 624.8 377 80.9
CSS0011944 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 2.8e-176 622.1 377 80.9
CSS0048709 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 2.8e-176 622.1 377 80.9
PGSC0003DMG400028417 Solanum tuberosum HOM05D005273 ORTHO05D006195 1.4e-175 619.8 347 85.0
Sopen02g021070 Solanum pennellii HOM05D005273 ORTHO05D006195 6.9e-175 617.5 347 85.3
GSVIVG01020564001 Vitis vinifera HOM05D005273 ORTHO05D006195 2.6e-174 615.5 344 85.5
CAN.G411.45 Capsicum annuum HOM05D005273 ORTHO05D006195 4.5e-174 614.8 372 80.6
Migut.D02068 Erythranthe guttata HOM05D005273 ORTHO05D006195 5.9e-174 614.4 389 77.9
FvH4_6g26410 Fragaria vesca HOM05D005273 ORTHO05D006195 1.4e-172 609.8 374 77.8
QL08p039365 Quercus lobata HOM05D005273 ORTHO05D006195 3.2e-172 608.6 374 77.8
Nn1g06518 Nelumbo nucifera HOM05D005273 ORTHO05D006195 4.2e-172 608.2 376 77.9
RcHm_v2.0_Chr2g0127911 Rosa chinensis HOM05D005273 ORTHO05D006195 2.1e-171 605.9 374 76.7
Hma1.2p1_0002F.1_g002020 Hydrangea macrophylla HOM05D005273 ORTHO05D006195 3.0e-170 602.1 348 83.6
Duzib264G0403 Durio zibethinus HOM05D005273 ORTHO05D006195 3.9e-170 601.7 365 79.5
SalBow1G1167 Salvia bowleyana HOM05D005273 ORTHO05D006195 3.9e-170 601.7 347 82.7
CDE08G0645 Ceratophyllum demersum HOM05D005273 ORTHO05D006195 8.8e-170 600.5 374 76.7
Manes.02G045100 Manihot esculenta HOM05D005273 ORTHO05D006195 1.1e-169 600.1 347 83.0
Sabra07G0113000 Salix brachista HOM05D005273 ORTHO05D006195 1.1e-169 600.1 377 75.6
Gohir.A11G060000 Gossypium hirsutum HOM05D005273 ORTHO05D006195 1.9e-169 599.4 365 78.1
FAN05G3218 Fragaria x ananassa HOM05D005273 ORTHO05D006195 7.4e-169 597.4 344 82.3
CANSAT64G2205 Cannabis sativa HOM05D005273 ORTHO05D006195 9.7e-169 597.0 374 76.5
Gorai.007G069300 Gossypium raimondii HOM05D005273 ORTHO05D006195 1.3e-168 596.7 365 77.5
DCAR_013064 Daucus carota HOM05D005273 ORTHO05D006195 1.7e-168 596.3 346 81.5
Sc21g0002980 Simmondsia chinensis HOM05D005273 ORTHO05D006195 3.7e-168 595.1 374 74.1
Prupe.3G131200 Prunus persica HOM05D005273 ORTHO05D006195 4.8e-168 594.7 374 76.7
Lsat_1_v5_gn_4_66761 Lactuca sativa HOM05D005273 ORTHO05D006195 6.3e-168 594.3 344 82.3
Nn1g04120 Nelumbo nucifera HOM05D005273 ORTHO05D006195 3.1e-167 592.0 343 81.6
HanXRQChr15g0466031 Helianthus annuus HOM05D005273 ORTHO05D006195 4.1e-167 591.7 373 76.7
SalBow1G7481 Salvia bowleyana HOM05D005273 ORTHO05D006195 4.1e-167 591.7 349 80.5
ECA246G2010 Erigeron canadensis HOM05D005273 ORTHO05D006195 5.3e-167 591.3 348 82.5
Potri.007G139700 Populus trichocarpa HOM05D005273 ORTHO05D006195 9.1e-167 590.5 347 79.8
Eucgr.K01040 Eucalyptus grandis HOM05D005273 ORTHO05D006195 1.2e-166 590.1 373 74.8
MD09G1233100 Malus domestica HOM05D005273 ORTHO05D006195 1.5e-166 589.7 374 75.7
Atru.chr6.2972 Acer truncatum HOM05D005273 ORTHO05D006195 2.0e-166 589.3 377 75.3
Gohir.D11G064100 Gossypium hirsutum HOM05D005273 ORTHO05D006195 2.6e-166 589.0 343 80.5
ClCG10G015250 Citrullus lanatus HOM05D005273 ORTHO05D006195 3.4e-166 588.6 360 77.2
CARHR229970 Cardamine hirsuta HOM05D005273 ORTHO05D006195 4.5e-166 588.2 364 75.8
unitig_899.g15313 Utricularia gibba HOM05D005273 ORTHO05D006195 4.5e-166 588.2 347 81.6
A03p53890 Brassica napus HOM05D005273 ORTHO05D006195 7.7e-166 587.4 377 74.3
Ciclev10015816m.g Citrus clementina HOM05D005273 ORTHO05D006195 1.0e-165 587.0 347 80.1
Sabra07G0117800 Salix brachista HOM05D005273 ORTHO05D006195 1.0e-165 587.0 394 72.1
Duzib147G0196 Durio zibethinus HOM05D005273 ORTHO05D006195 1.3e-165 586.6 373 76.4
BraA03t14458Z Brassica rapa HOM05D005273 ORTHO05D006195 2.9e-165 585.5 353 77.9
CANSAT64G2383 Cannabis sativa HOM05D005273 ORTHO05D006195 2.9e-165 585.5 344 80.5
COL.COLO4_33584 Corchorus olitorius HOM05D005273 ORTHO05D006195 3.8e-165 585.1 365 75.3
Glyma.12G114500 Glycine max HOM05D005273 ORTHO05D006195 3.8e-165 585.1 357 78.4
TWI59G0041 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 3.8e-165 585.1 352 79.0
arahy.Tifrunner.gnm1.ann1.EEV1KR Arachis hypogaea HOM05D005273 ORTHO05D006195 5.0e-165 584.7 359 78.3
BolC7t45723H Brassica oleracea HOM05D005273 ORTHO05D006195 5.0e-165 584.7 353 77.9
Sed0018091 Sechium edule HOM05D005273 ORTHO05D006195 8.5e-165 583.9 360 76.7
Hund09652 Selenicereus undatus HOM05D005273 ORTHO05D006195 2.5e-164 582.4 374 75.1
AL7G30590 Arabidopsis lyrata HOM05D005273 ORTHO05D006195 3.2e-164 582.0 376 73.7
arahy.Tifrunner.gnm1.ann1.RDE8QD Arachis hypogaea HOM05D005273 ORTHO05D006195 3.2e-164 582.0 359 77.7
PGR142G4354 Punica granatum HOM05D005273 ORTHO05D006195 3.2e-164 582.0 343 80.5
Thhalv10025474m.g Eutrema salsugineum HOM05D005273 ORTHO05D006195 7.2e-164 580.9 343 79.9
VMungo1127G0137 Vigna mungo HOM05D005273 ORTHO05D006195 7.2e-164 580.9 345 80.3
A01p14180 Brassica napus HOM05D005273 ORTHO05D006195 9.4e-164 580.5 374 74.1
C07p52300 Brassica napus HOM05D005273 ORTHO05D006195 9.4e-164 580.5 353 77.3
arahy.Tifrunner.gnm1.ann1.891C6J Arachis hypogaea HOM05D005273 ORTHO05D006195 1.2e-163 580.1 359 78.0
ATR0737G119 Amborella trichopoda HOM05D005273 ORTHO05D006195 1.6e-163 579.7 344 77.9
BraA01t01367Z Brassica rapa HOM05D005273 ORTHO05D006195 1.6e-163 579.7 352 77.3
Aa31LG2G13370 Aethionema arabicum HOM05D005273 ORTHO05D006195 2.1e-163 579.3 355 76.3
PSO782G4868 Papaver somniferum HOM05D005273 ORTHO05D006195 2.7e-163 578.9 370 75.9
Carub.0007s1834 Capsella rubella HOM05D005273 ORTHO05D006195 3.6e-163 578.6 377 73.5
vmacro12316 Vaccinium macrocarpon HOM05D005273 ORTHO05D006195 3.6e-163 578.6 456 66.2
Haze_12807 Corylus avellana HOM05D005273 ORTHO05D006195 4.7e-163 578.2 357 77.9
Phvul.011G119600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 4.7e-163 578.2 341 80.6
BcaNung01659 Brassica carinata HOM05D005273 ORTHO05D006195 7.9e-163 577.4 377 73.7
Os01g0747500 Oryza sativa ssp. japonica HOM05D005273 ORTHO05D006195 1.8e-162 576.2 343 78.4
Sp7g21020 Schrenkiella parvula HOM05D005273 ORTHO05D006195 1.8e-162 576.2 343 79.0
Lalb_Chr03g0027211 Lupinus albus HOM05D005273 ORTHO05D006195 2.3e-162 575.9 341 80.1
AUR62012902 Chenopodium quinoa HOM05D005273 ORTHO05D006195 3.0e-162 575.5 344 79.9
Ca_18943_v3 Cicer arietinum L. HOM05D005273 ORTHO05D006195 3.0e-162 575.5 341 79.2
CsaV3_3G041260 Cucumis sativus L. HOM05D005273 ORTHO05D006195 3.0e-162 575.5 360 75.8
Carub.0001s3611 Capsella rubella HOM05D005273 ORTHO05D006195 3.9e-162 575.1 376 72.9
AT4G22930 Arabidopsis thaliana HOM05D005273 ORTHO05D006195 5.1e-162 574.7 352 76.1
THA.LOC104823543 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 6.7e-162 574.3 351 76.6
PSO478G2492 Papaver somniferum HOM05D005273 ORTHO05D006195 8.8e-162 573.9 370 75.4
arahy.Tifrunner.gnm1.ann1.YR7R6W Arachis hypogaea HOM05D005273 ORTHO05D006195 1.5e-161 573.2 337 80.7
Aqoxy6G00048 Aquilegia oxysepala HOM05D005273 ORTHO05D006195 2.0e-161 572.8 367 74.9
Medtr4g078370 Medicago truncatula HOM05D005273 ORTHO05D006195 7.4e-161 570.9 341 79.2
Psat7g169200 Pisum sativum HOM05D005273 ORTHO05D006195 7.4e-161 570.9 341 79.2
Lj3g0011026 Lotus japonicus HOM05D005273 ORTHO05D006195 2.2e-160 569.3 341 79.8
Phvul.010G107600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 2.8e-160 568.9 345 79.1
TAR627G0042 Trochodendron aralioides HOM05D005273 ORTHO05D006195 3.7e-160 568.5 384 73.4
Ah.11g045620 Amaranthus hybridus HOM05D005273 ORTHO05D006195 4.8e-160 568.2 344 78.2
Glyma.06G291600 Glycine max HOM05D005273 ORTHO05D006195 4.8e-160 568.2 345 78.6
MELO3C009854.2 Cucumis melo HOM05D005273 ORTHO05D006195 3.1e-159 565.5 369 73.7
SGA_v2.0_scaffold25G10971 Striga asiatica HOM05D005273 ORTHO05D006195 1.2e-158 563.5 385 73.5
EL10Ac3g07435 Beta vulgaris HOM05D005273 ORTHO05D006195 2.0e-158 562.8 358 75.7
THA.LOC104814179 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 2.0e-158 562.8 341 78.0
HPP92_004898 Vanilla planifolia HOM05D005273 ORTHO05D006195 3.8e-157 558.5 344 76.5
Zm00001eb153030 Zea mays HOM05D005273 ORTHO05D006195 5.0e-157 558.1 361 73.4
Rhsim06G0140600 Rhododendron simsii HOM05D005273 ORTHO05D006195 2.5e-156 555.8 477 61.8
AUR62011776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 9.4e-156 553.9 411 65.9
CiPaw.04G127500 Carya illinoinensis HOM05D005273 ORTHO05D006195 2.7e-155 552.4 348 76.7
TWI18G0085 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 1.7e-152 543.1 344 76.7
SHI10390 Sapria himalayana HOM05D005273 ORTHO05D006195 2.0e-150 536.2 344 73.3
C01p17440 Brassica napus HOM05D000022 ORTHO05D006195 2.2e-149 532.7 355 72.7
BcaC09g51057 Brassica carinata HOM05D000022 ORTHO05D006195 4.4e-145 518.5 363 68.9
Mapoly0001s0029 Marchantia polymorpha HOM05D005273 ORTHO05D006195 4.5e-142 508.4 339 73.2
Dinv04937 Davidia involucrata HOM05D005273 ORTHO05D006195 5.9e-142 508.1 354 73.4
Lj5g0005541 Lotus japonicus HOM05D005273 ORTHO05D006195 1.7e-141 506.5 304 80.3
Cpa.g.sc83.46 Carica papaya HOM05D005273 ORTHO05D006195 5.0e-141 505.0 347 70.3
SMO347G0496 Selaginella moellendorffii HOM05D005273 ORTHO05D006195 5.0e-141 505.0 341 72.1
Pp3c13_8930 Physcomitrium patens HOM05D005273 ORTHO05D006195 2.3e-138 496.1 339 70.5
Thecc.01G150900 Theobroma cacao HOM05D005273 ORTHO05D006195 1.4e-127 460.3 270 80.7
Nitab4.5_0006070g0020 Nicotiana tabacum HOM05D005273 ORTHO05D006195 9.2e-127 457.6 312 75.3
CBR_g21229 Chara braunii HOM05D005273 ORTHO05D006195 1.6e-126 456.8 329 65.7
Nitab4.5_0000437g0040 Nicotiana tabacum HOM05D005273 ORTHO05D006195 1.6e-126 456.8 312 75.0
MBI07_g30188_MAGBIO Magnolia biondii HOM05D005273 ORTHO05D006195 6.1e-123 444.9 374 62.0
AUR62011723 Chenopodium quinoa HOM05D005273 ORTHO05D006195 5.8e-121 438.3 258 80.2
Cre11.g467550 Chlamydomonas reinhardtii HOM05D005273 ORTHO05D006195 3.7e-120 435.6 338 62.4
AUR62024621 Chenopodium quinoa HOM05D005273 ORTHO05D006195 2.0e-118 429.9 255 78.4
Cfa014627 Carpinus fangiana HOM05D005273 ORTHO05D006195 1.1e-116 424.1 405 56.0
CSS0013056 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 8.3e-112 407.9 365 60.3
MCO16G183 Micromonas commoda HOM05D005273 ORTHO05D006195 6.2e-107 391.7 338 55.9
BolC1t01684H Brassica oleracea HOM05D005273 ORTHO05D006195 3.1e-106 389.4 232 76.7
CSS0022573 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 4.9e-104 382.1 359 59.3
Thecc.K0007100 Theobroma cacao HOM05D005273 ORTHO05D006195 8.3e-104 381.3 228 79.4
AagrBONN_evm.TU.Sc2ySwM_117.50 Anthoceros agrestis HOM05D005273 ORTHO05D006195 3.3e-100 369.4 245 73.1
Haze_27262 Corylus avellana HOM05D005273 ORTHO05D006195 2.4e-95 353.2 338 54.1
PRCOL_00003989 Prasinoderma coloniale HOM05D005273 ORTHO05D006195 3.5e-94 349.4 340 52.9
FAN02G4311 Fragaria x ananassa HOM05D005273 ORTHO05D006195 4.7e-91 339.0 216 75.9
QL08p039454 Quercus lobata HOM05D005273 ORTHO05D006195 2.6e-89 333.2 251 67.3
Lj1C718T2 Lonicera japonica HOM05D005273 ORTHO05D006195 6.0e-86 322.0 186 82.3
Actinidia11084 Actinidia chinensis HOM05D005273 ORTHO05D006195 5.8e-81 305.4 175 83.4
Atru.chr6.2977 Acer truncatum HOM05D005273 ORTHO05D006195 4.2e-71 272.7 219 64.4
Peaxi162Scf00112g00113 Petunia axillaris HOM05D005273 ORTHO05D006195 4.6e-62 242.7 159 74.2
SEGI_10566 Sequoiadendron giganteum HOM05D005273 ORTHO05D006195 1.3e-61 241.1 168 69.6
Peaxi162Scf00112g00110 Petunia axillaris HOM05D005273 ORTHO05D006195 3.8e-56 223.0 118 87.3
Oeu007130.1 Olea europaea HOM05D005273 ORTHO05D006195 3.0e-53 213.4 341 39.9
Lj1A718G26 Lonicera japonica HOM05D005273 ORTHO05D006195 1.5e-52 211.1 118 81.4
Atru.chr6.2976 Acer truncatum HOM05D005273 ORTHO05D006195 6.5e-40 169.1 99 81.8
EL10Ac9g21222 Beta vulgaris HOM05D005273 ORTHO05D006195 1.1e-39 168.3 248 42.3
TPR.G7356 Trifolium pratense HOM05D005273 ORTHO05D006195 1.8e-37 161.0 94 83.0
Cfa022577 Carpinus fangiana HOM05D005273 ORTHO05D006195 3.0e-37 160.2 353 34.0
Lj3g0005703 Lotus japonicus HOM05D002777 ORTHO05D001516 1.6e-22 111.3 80 71.2
AUR62041872 Chenopodium quinoa HOM05D005273 ORTHO05D006195 3.6e-22 110.2 93 57.0
AUR62036776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 5.2e-21 106.3 168 42.9
BcaNung01011 Brassica carinata HOM05D005273 ORTHO05D006195 7.5e-20 102.4 267 32.6
Lalb_Chr09g0333161 Lupinus albus HOM05D005273 ORTHO05D006195 2.7e-17 94.0 84 58.3
TPR.G31736 Trifolium pratense HOM05D005273 ORTHO05D006195 1.7e-11 74.7 45 73.3
Lj5A796T26 Lonicera japonica HOM05D005273 ORTHO05D006195 3.7e-11 73.6 41 78.0


User provided reference genes

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