Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g20100 Coffea canephora HOM05D001733 ORTHO05D001882 7.9e-98 360.5 194 100.0
Cc07_g12830 Coffea canephora HOM05D001733 ORTHO05D001882 1.7e-23 113.6 71 85.9
PGR042G3423 Punica granatum HOM05D001733 ORTHO05D001882 3.8e-23 112.5 71 83.1
DCAR_003411 Daucus carota HOM05D001733 ORTHO05D001882 4.9e-23 112.1 71 83.1
Nitab4.5_0001735g0060 Nicotiana tabacum HOM05D001733 ORTHO05D001882 4.9e-23 112.1 71 83.1
Sopen05g032550 Solanum pennellii HOM05D001733 ORTHO05D001882 6.4e-23 111.7 71 83.1
CAN.G1186.7 Capsicum annuum HOM05D001733 ORTHO05D001882 8.4e-23 111.3 71 84.5
Solyc11g011960.2 Solanum lycopersicum HOM05D001733 ORTHO05D001882 8.4e-23 111.3 71 84.5
Sopen11g006770 Solanum pennellii HOM05D001733 ORTHO05D001882 8.4e-23 111.3 71 84.5
TAR622G0535 Trochodendron aralioides HOM05D001733 ORTHO05D001882 8.4e-23 111.3 71 83.1
PGR004G2261 Punica granatum HOM05D001733 ORTHO05D001882 1.1e-22 110.9 71 80.3
Solyc05g054060.3 Solanum lycopersicum HOM05D001733 ORTHO05D001882 1.1e-22 110.9 71 83.1
Glyma.02G241100 Glycine max HOM05D001733 ORTHO05D001882 1.4e-22 110.5 71 83.1
Glyma.14G210700 Glycine max HOM05D001733 ORTHO05D001882 1.4e-22 110.5 71 83.1
LjContig00141g0019465 Lotus japonicus HOM05D001733 ORTHO05D001882 1.4e-22 110.5 71 83.1
Lalb_Chr15g0085251 Lupinus albus HOM05D001733 ORTHO05D001882 1.4e-22 110.5 71 83.1
Eucgr.F02905 Eucalyptus grandis HOM05D001733 ORTHO05D001882 1.9e-22 110.2 71 81.7
Psat0s3165g0080 Pisum sativum HOM05D001733 ORTHO05D001882 1.9e-22 110.2 71 83.1
Gohir.D11G175800 Gossypium hirsutum HOM05D001733 ORTHO05D001882 2.4e-22 109.8 71 81.7
Gorai.007G188400 Gossypium raimondii HOM05D001733 ORTHO05D001882 2.4e-22 109.8 71 81.7
Manes.01G123000 Manihot esculenta HOM05D001733 ORTHO05D001882 2.4e-22 109.8 71 81.7
PSO063G7403 Papaver somniferum HOM05D001733 ORTHO05D001882 2.4e-22 109.8 71 81.7
PSO782G3656 Papaver somniferum HOM05D001733 ORTHO05D001882 2.4e-22 109.8 71 81.7
Thecc.04G000500 Theobroma cacao HOM05D001733 ORTHO05D001882 2.4e-22 109.8 71 81.7
MSTRG.3676 Avicennia marina HOM05D001733 ORTHO05D001882 3.2e-22 109.4 71 83.1
Ciclev10011657m.g Citrus clementina HOM05D001733 ORTHO05D001882 3.2e-22 109.4 71 81.7
HanXRQChr16g0532261 Helianthus annuus HOM05D001733 ORTHO05D001882 3.2e-22 109.4 71 81.7
Nn3g18506 Nelumbo nucifera HOM05D001733 ORTHO05D001882 3.2e-22 109.4 71 81.7
Potri.004G074400 Populus trichocarpa HOM05D001733 ORTHO05D001882 3.2e-22 109.4 71 83.1
Potri.017G144700 Populus trichocarpa HOM05D001733 ORTHO05D001882 3.2e-22 109.4 71 83.1
vmacro18513 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 3.2e-22 109.4 71 83.1
Actinidia17167 Actinidia chinensis HOM05D001733 ORTHO05D001882 4.1e-22 109.0 71 81.7
CAN.G449.11 Capsicum annuum HOM05D001733 ORTHO05D001882 4.1e-22 109.0 71 80.3
Gohir.A11G169600 Gossypium hirsutum HOM05D001733 ORTHO05D001882 4.1e-22 109.0 71 80.3
HanXRQChr15g0482381 Helianthus annuus HOM05D001733 ORTHO05D001882 4.1e-22 109.0 71 80.3
Lsat_1_v5_gn_3_67140 Lactuca sativa HOM05D001733 ORTHO05D001882 4.1e-22 109.0 71 80.3
Sc20g0000780 Simmondsia chinensis HOM05D001733 ORTHO05D001882 4.1e-22 109.0 71 80.3
Actinidia28784 Actinidia chinensis HOM05D001733 ORTHO05D001882 5.4e-22 108.6 71 80.3
ATR0807G128 Amborella trichopoda HOM05D001733 ORTHO05D001882 5.4e-22 108.6 71 80.3
CiPaw.03G076600 Carya illinoinensis HOM05D001733 ORTHO05D001882 5.4e-22 108.6 71 80.3
DCAR_014145 Daucus carota HOM05D001733 ORTHO05D001882 5.4e-22 108.6 71 78.9
Dinv28238 Davidia involucrata HOM05D001733 ORTHO05D001882 5.4e-22 108.6 71 80.3
Duzib138G1439 Durio zibethinus HOM05D001733 ORTHO05D001882 5.4e-22 108.6 71 80.3
Nn4g24687 Nelumbo nucifera HOM05D001733 ORTHO05D001882 5.4e-22 108.6 71 80.3
Nitab4.5_0000143g0530 Nicotiana tabacum HOM05D001733 ORTHO05D001882 5.4e-22 108.6 71 81.7
Sc09g0004470 Simmondsia chinensis HOM05D001733 ORTHO05D001882 5.4e-22 108.6 71 80.3
unitig_748.g7021 Utricularia gibba HOM05D001733 ORTHO05D001882 5.4e-22 108.6 71 80.3
Atru.chr1.2162 Acer truncatum HOM05D001733 ORTHO05D001882 7.1e-22 108.2 71 80.3
CSS0033291 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 7.1e-22 108.2 71 81.7
Cfa007757 Carpinus fangiana HOM05D001733 ORTHO05D001882 7.1e-22 108.2 71 78.9
Ca_17067_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 7.1e-22 108.2 71 81.7
ECA246G3382 Erigeron canadensis HOM05D001733 ORTHO05D001882 7.1e-22 108.2 71 80.3
Nitab4.5_0001198g0330 Nicotiana tabacum HOM05D001733 ORTHO05D001882 7.1e-22 108.2 71 80.3
Sp6g26920 Schrenkiella parvula HOM05D001733 ORTHO05D001882 7.1e-22 108.2 71 81.7
HPP92_003187 Vanilla planifolia HOM05D001733 ORTHO05D001882 7.1e-22 108.2 71 80.3
Actinidia40419 Actinidia chinensis HOM05D001733 ORTHO05D001882 9.2e-22 107.8 71 81.7
BcaC05g30312 Brassica carinata HOM05D001733 ORTHO05D001882 9.2e-22 107.8 71 81.7
A05p43950 Brassica napus HOM05D001733 ORTHO05D001882 9.2e-22 107.8 71 81.7
C05p63560 Brassica napus HOM05D001733 ORTHO05D001882 9.2e-22 107.8 71 81.7
BolC5t35024H Brassica oleracea HOM05D001733 ORTHO05D001882 9.2e-22 107.8 71 81.7
BraA05t23131Z Brassica rapa HOM05D001733 ORTHO05D001882 9.2e-22 107.8 71 81.7
Carub.0006s1550 Capsella rubella HOM05D001733 ORTHO05D001882 9.2e-22 107.8 71 81.7
Haze_14315 Corylus avellana HOM05D001733 ORTHO05D001882 9.2e-22 107.8 71 78.9
MELO3C020244.2 Cucumis melo HOM05D001733 ORTHO05D001882 9.2e-22 107.8 71 80.3
Thhalv10013449m.g Eutrema salsugineum HOM05D001733 ORTHO05D001882 9.2e-22 107.8 71 81.7
Manes.02G080600 Manihot esculenta HOM05D001733 ORTHO05D001882 9.2e-22 107.8 71 80.3
Sabra04G0049200 Salix brachista HOM05D001733 ORTHO05D001882 9.2e-22 107.8 71 81.7
Sp3g02280 Schrenkiella parvula HOM05D001733 ORTHO05D001882 9.2e-22 107.8 71 81.7
PGSC0003DMG401013333 Solanum tuberosum HOM05D001733 ORTHO05D001882 9.2e-22 107.8 71 83.1
AL6G28390 Arabidopsis lyrata HOM05D001733 ORTHO05D001882 1.2e-21 107.5 71 80.3
AT5G17310 Arabidopsis thaliana HOM05D001733 ORTHO05D001882 1.2e-21 107.5 71 80.3
A03p08270 Brassica napus HOM05D001733 ORTHO05D001882 1.2e-21 107.5 71 80.3
C03p09620 Brassica napus HOM05D001733 ORTHO05D001882 1.2e-21 107.5 71 80.3
CiPaw.04G049000 Carya illinoinensis HOM05D001733 ORTHO05D001882 1.2e-21 107.5 71 80.3
AUR62003403 Chenopodium quinoa HOM05D001733 ORTHO05D001882 1.2e-21 107.5 71 78.9
CsaV3_3G021110 Cucumis sativus L. HOM05D001733 ORTHO05D001882 1.2e-21 107.5 71 80.3
Medtr5g077000 Medicago truncatula HOM05D001733 ORTHO05D001882 1.2e-21 107.5 71 81.7
Psat2g043240 Pisum sativum HOM05D001733 ORTHO05D001882 1.2e-21 107.5 71 81.7
Rhsim08G0020900 Rhododendron simsii HOM05D001733 ORTHO05D001882 1.2e-21 107.5 71 80.3
TPR.G18898 Trifolium pratense HOM05D001733 ORTHO05D001882 1.2e-21 107.5 71 80.3
GSVIVG01026563001 Vitis vinifera HOM05D001733 ORTHO05D001882 1.2e-21 107.5 71 80.3
ClCG05G011350 Citrullus lanatus HOM05D001733 ORTHO05D001882 1.6e-21 107.1 71 78.9
Glyma.11G210989 Glycine max HOM05D001733 ORTHO05D001882 1.6e-21 107.1 71 80.3
THA.LOC104802909 Tarenaya hassleriana HOM05D001733 ORTHO05D001882 1.6e-21 107.1 71 80.3
THA.LOC104820859 Tarenaya hassleriana HOM05D001733 ORTHO05D001882 1.6e-21 107.1 71 80.3
unitig_748.g7251 Utricularia gibba HOM05D001733 ORTHO05D001882 1.6e-21 107.1 71 77.5
BcaC05g29872 Brassica carinata HOM05D001733 ORTHO05D001882 2.1e-21 106.7 71 80.3
CANSAT54G2999 Cannabis sativa HOM05D001733 ORTHO05D001882 2.1e-21 106.7 71 78.9
Cpa.g.sc178.21 Carica papaya HOM05D001733 ORTHO05D001882 2.1e-21 106.7 71 80.3
CSS0043880 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 2.7e-21 106.3 71 78.9
Sed0017083 Sechium edule HOM05D001733 ORTHO05D001882 2.7e-21 106.3 71 78.9
Aa31LG11G12370 Aethionema arabicum HOM05D001733 ORTHO05D001882 3.5e-21 105.9 71 78.9
COL.COLO4_19771 Corchorus olitorius HOM05D001733 ORTHO05D001882 3.5e-21 105.9 71 80.3
QL02p064794 Quercus lobata HOM05D001733 ORTHO05D001882 3.5e-21 105.9 71 77.5
BcaC09g47739 Brassica carinata HOM05D001733 ORTHO05D001882 4.6e-21 105.5 71 80.3
A06p26340 Brassica napus HOM05D001733 ORTHO05D001882 4.6e-21 105.5 71 80.3
BNapus_Darmor_BZH_scaffold_78p00090 Brassica napus HOM05D001733 ORTHO05D001882 4.6e-21 105.5 71 80.3
Migut.K00740 Erythranthe guttata HOM05D001733 ORTHO05D001882 4.6e-21 105.5 71 78.9
Medtr3g064490 Medicago truncatula HOM05D001733 ORTHO05D001882 4.6e-21 105.5 69 82.6
SEGI_33272 Sequoiadendron giganteum HOM05D001733 ORTHO05D001882 4.6e-21 105.5 71 76.1
VMungo0647G0783 Vigna mungo HOM05D001733 ORTHO05D001882 4.6e-21 105.5 71 78.9
Zm00001eb104400 Zea mays HOM05D001733 ORTHO05D001882 4.6e-21 105.5 71 78.9
Zm00001eb320800 Zea mays HOM05D001733 ORTHO05D001882 4.6e-21 105.5 71 78.9
CDE04G1424 Ceratophyllum demersum HOM05D001733 ORTHO05D001882 6.0e-21 105.1 71 80.3
Os09g0553200 Oryza sativa ssp. japonica HOM05D001733 ORTHO05D001882 6.0e-21 105.1 71 78.9
Prupe.3G015000 Prunus persica HOM05D001733 ORTHO05D001882 6.0e-21 105.1 71 80.3
Sed0007038 Sechium edule HOM05D001733 ORTHO05D001882 6.0e-21 105.1 71 77.5
BraA01t04586Z Brassica rapa HOM05D001733 ORTHO05D001882 7.8e-21 104.8 71 78.9
Thhalv10020665m.g Eutrema salsugineum HOM05D001733 ORTHO05D001882 7.8e-21 104.8 71 80.3
Phvul.008G240600 Phaseolus vulgaris HOM05D001733 ORTHO05D001882 7.8e-21 104.8 70 81.4
Pp3c1_140 Physcomitrium patens HOM05D001733 ORTHO05D001882 7.8e-21 104.8 71 77.5
Aqoxy3G04124 Aquilegia oxysepala HOM05D001733 ORTHO05D001882 1.0e-20 104.4 71 78.9
CARHR077270 Cardamine hirsuta HOM05D001733 ORTHO05D001882 1.0e-20 104.4 71 77.5
Lj4A253T37 Lonicera japonica HOM05D001733 ORTHO05D001882 1.0e-20 104.4 71 76.1
Rhsim10G0185000 Rhododendron simsii HOM05D001733 ORTHO05D001882 1.0e-20 104.4 71 78.9
TWI77G0925 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 1.0e-20 104.4 71 78.9
vmacro20474 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 1.0e-20 104.4 71 78.9
Actinidia35712 Actinidia chinensis HOM05D001733 ORTHO05D001882 1.3e-20 104.0 71 76.1
FvH4_1g27720 Fragaria vesca HOM05D001733 ORTHO05D001882 1.3e-20 104.0 71 77.5
FAN19G1940 Fragaria x ananassa HOM05D001733 ORTHO05D001882 1.3e-20 104.0 71 77.5
FAN26G3480 Fragaria x ananassa HOM05D001733 ORTHO05D001882 1.3e-20 104.0 71 77.5
RcHm_v2.0_Chr3g0488851 Rosa chinensis HOM05D001733 ORTHO05D001882 1.3e-20 104.0 71 77.5
Zm00001eb230070 Zea mays HOM05D001733 ORTHO05D001882 1.3e-20 104.0 71 76.1
CDE02G0713 Ceratophyllum demersum HOM05D001733 ORTHO05D001882 1.7e-20 103.6 71 78.9
Hund06872 Selenicereus undatus HOM05D001733 ORTHO05D001882 1.7e-20 103.6 71 77.5
Hund22202 Selenicereus undatus HOM05D001733 ORTHO05D001882 1.7e-20 103.6 71 76.1
EL10Ac4g08931 Beta vulgaris HOM05D001733 ORTHO05D001882 2.3e-20 103.2 71 76.1
TWI53G0883 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 2.3e-20 103.2 71 77.5
AL3G12860 Arabidopsis lyrata HOM05D001733 ORTHO05D001882 3.0e-20 102.8 71 77.5
AT3G03250 Arabidopsis thaliana HOM05D001733 ORTHO05D001882 3.0e-20 102.8 71 77.5
BraA03t10147Z Brassica rapa HOM05D001733 ORTHO05D001882 3.0e-20 102.8 71 77.5
Carub.0003s0240 Capsella rubella HOM05D001733 ORTHO05D001882 3.0e-20 102.8 71 77.5
FAN23G2775 Fragaria x ananassa HOM05D001733 ORTHO05D001882 3.0e-20 102.8 71 76.1
Gorai.004G048300 Gossypium raimondii HOM05D001733 ORTHO05D001882 3.0e-20 102.8 71 74.6
MD09G1278300 Malus domestica HOM05D001733 ORTHO05D001882 3.0e-20 102.8 71 77.5
FAN28G2921 Fragaria x ananassa HOM05D001733 ORTHO05D001882 3.9e-20 102.4 71 76.1
Gohir.A08G038600 Gossypium hirsutum HOM05D001733 ORTHO05D001882 3.9e-20 102.4 71 76.1
Gohir.D08G048800 Gossypium hirsutum HOM05D001733 ORTHO05D001882 3.9e-20 102.4 71 76.1
Os02g0117700 Oryza sativa ssp. japonica HOM05D001733 ORTHO05D001882 8.6e-20 101.3 70 75.7
Pp3c11_690 Physcomitrium patens HOM05D001733 ORTHO05D001882 1.1e-19 100.9 70 74.3
SalBow5G0948 Salvia bowleyana HOM05D001733 ORTHO05D001882 1.5e-19 100.5 74 77.0
SalBow5G5318 Salvia bowleyana HOM05D001733 ORTHO05D001882 1.5e-19 100.5 74 77.0
MBI06_g07519_MAGBIO Magnolia biondii HOM05D001733 ORTHO05D001882 1.9e-19 100.1 71 73.2
Mapoly0072s0036 Marchantia polymorpha HOM05D001733 ORTHO05D001882 3.3e-19 99.4 71 71.8
Aqoxy4G00073 Aquilegia oxysepala HOM05D001733 ORTHO05D001882 7.3e-19 98.2 71 73.2
Nitab4.5_0009147g0020 Nicotiana tabacum HOM05D001733 ORTHO05D001882 7.3e-19 98.2 84 67.9
AagrBONN_evm.TU.Sc2ySwM_228.431 Anthoceros agrestis HOM05D001733 ORTHO05D001882 9.6e-19 97.8 71 71.8
Dinv19076 Davidia involucrata HOM05D001733 ORTHO05D001882 2.8e-18 96.3 96 61.5
Sabra17G0121200 Salix brachista HOM05D001733 ORTHO05D001882 3.6e-18 95.9 91 63.7
SMO358G0524 Selaginella moellendorffii HOM05D001733 ORTHO05D001882 3.6e-18 95.9 71 69.0
Psat3g194080 Pisum sativum HOM05D001733 ORTHO05D001882 1.1e-17 94.4 52 88.5
Aa31LG5G13850 Aethionema arabicum HOM05D001733 ORTHO05D001882 1.4e-17 94.0 71 69.0
CBR_g4484 Chara braunii HOM05D001733 ORTHO05D001882 7.6e-16 88.2 71 64.8
Aqoxy2G02400 Aquilegia oxysepala HOM05D001733 ORTHO05D001882 1.3e-15 87.4 70 68.6
arahy.Tifrunner.gnm1.ann1.F91WU6 Arachis hypogaea HOM05D001733 ORTHO05D001882 2.9e-15 86.3 71 70.4
Os01g0264100 Oryza sativa ssp. japonica HOM05D001733 ORTHO05D001882 5.4e-14 82.0 67 65.7
TAR362G1142 Trochodendron aralioides HOM05D001733 ORTHO05D001882 7.1e-14 81.6 68 72.1
Lj2A512T37 Lonicera japonica HOM05D001733 ORTHO05D001882 2.1e-13 80.1 71 67.6
SGA_v2.0_scaffold45G17115 Striga asiatica HOM05D001733 ORTHO05D001882 7.8e-13 78.2 71 67.6
Sabra15G0083200 Salix brachista HOM05D001733 ORTHO05D001882 2.3e-12 76.6 71 67.6
CSS0002027 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 3.9e-12 75.9 72 55.6
Ah.04g163000 Amaranthus hybridus HOM05D001733 ORTHO05D001882 6.6e-12 75.1 71 64.8
CSS0011354 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 1.5e-11 73.9 72 55.6
MD17G1271300 Malus domestica HOM05D001733 ORTHO05D001882 1.9e-11 73.6 71 63.4
Oeu012522.2 Olea europaea HOM05D001733 ORTHO05D001882 3.3e-11 72.8 53 73.6
BcaC09g48535 Brassica carinata HOM05D001733 ORTHO05D000101 7.3e-11 71.6 65 60.0
Peaxi162Scf00990g00128 Petunia axillaris HOM05D001733 ORTHO05D001882 7.3e-11 71.6 71 63.4
THA.LOC104824596 Tarenaya hassleriana HOM05D001733 ORTHO05D001882 2.4e-09 66.6 62 64.5
Dinv43956 Davidia involucrata HOM05D001733 ORTHO05D001882 5.3e-09 65.5 72 52.8
QL08p048200 Quercus lobata HOM05D001733 ORTHO05D001882 9.0e-09 64.7 70 52.9
CiPaw.02G047900 Carya illinoinensis HOM05D001733 ORTHO05D001882 2.6e-08 63.2 68 54.4
Atru.chr9.238 Acer truncatum HOM05D001733 ORTHO05D001882 2.9e-07 59.7 70 48.6
BNapus_Darmor_BZH_scaffold_162p00100 Brassica napus HOM05D001733 ORTHO05D001882 4.9e-07 58.9 71 54.9
Eucgr.D01117 Eucalyptus grandis HOM05D001733 ORTHO05D001882 6.4e-07 58.5 63 55.6
Pp3c23_20400 Physcomitrium patens HOM05D001733 ORTHO05D001882 6.4e-07 58.5 71 43.7
MD02G1230600 Malus domestica HOM05D001733 ORTHO05D001882 1.4e-06 57.4 55 56.4
Cfa003706 Carpinus fangiana HOM05D001733 ORTHO05D001882 1.9e-06 57.0 56 55.4
Duzib106G0611 Durio zibethinus HOM05D001733 ORTHO05D001882 3.2e-06 56.2 70 48.6
Gohir.D11G237300 Gossypium hirsutum HOM05D001733 ORTHO05D001882 5.4e-06 55.5 71 47.9
Gorai.007G250600 Gossypium raimondii HOM05D001733 ORTHO05D001882 7.1e-06 55.1 71 46.5


User provided reference genes

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