Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g19360 Coffea canephora HOM05D007733 ORTHO05D009786 7.9e-28 126.3 61 100.0
Sed0021033 Sechium edule HOM05D007733 ORTHO05D009786 4.2e-21 104.0 56 83.9
CSS0035024 Camellia sinensis var. sinensis HOM05D007733 ORTHO05D009786 7.2e-21 103.2 59 83.1
MELO3C019082.2 Cucumis melo HOM05D007733 ORTHO05D009786 9.3e-21 102.8 55 85.5
CsaV3_4G029620 Cucumis sativus L. HOM05D007733 ORTHO05D009786 9.3e-21 102.8 55 85.5
Prupe.7G032300 Prunus persica HOM05D007733 ORTHO05D009786 1.6e-20 102.1 59 81.4
MD12G1095600 Malus domestica HOM05D007733 ORTHO05D009786 2.1e-20 101.7 59 79.7
Oeu063785.1 Olea europaea HOM05D007733 ORTHO05D009786 2.1e-20 101.7 55 87.3
PGSC0003DMG401008361 Solanum tuberosum HOM05D007733 ORTHO05D009786 6.1e-20 100.1 56 82.1
Lalb_Chr06g0173691 Lupinus albus HOM05D007733 ORTHO05D009786 1.0e-19 99.4 56 82.1
CiPaw.09G048000 Carya illinoinensis HOM05D007733 ORTHO05D009786 1.8e-19 98.6 55 81.8
FAN06G4775 Fragaria x ananassa HOM05D007733 ORTHO05D009786 1.8e-19 98.6 58 81.0
FAN10G3322 Fragaria x ananassa HOM05D000072 ORTHO05D000026 1.8e-19 98.6 58 81.0
CAN.G960.60 Capsicum annuum HOM05D007733 ORTHO05D009786 2.3e-19 98.2 56 80.4
Solyc10g078420.2 Solanum lycopersicum HOM05D007733 ORTHO05D009786 2.3e-19 98.2 56 80.4
CDE04G2892 Ceratophyllum demersum HOM05D007733 ORTHO05D009786 3.9e-19 97.4 59 74.6
Peaxi162Scf00696g00026 Petunia axillaris HOM05D007733 ORTHO05D009786 3.9e-19 97.4 53 84.9
Atru.chr1.1436 Acer truncatum HOM05D007733 ORTHO05D009786 5.1e-19 97.1 52 84.6
Migut.J01653 Erythranthe guttata HOM05D007733 ORTHO05D009786 5.1e-19 97.1 55 83.6
FAN03G1257 Fragaria x ananassa HOM05D000072 ORTHO05D000026 6.7e-19 96.7 56 82.1
MD00G1018100 Malus domestica HOM05D007733 ORTHO05D009786 6.7e-19 96.7 54 83.3
Manes.01G136000 Manihot esculenta HOM05D007733 ORTHO05D009786 1.1e-18 95.9 55 81.8
Thecc.01G129600 Theobroma cacao HOM05D007733 ORTHO05D009786 1.5e-18 95.5 59 78.0
Glyma.12G186000 Glycine max HOM05D007733 ORTHO05D009786 1.9e-18 95.1 56 75.0
Glyma.13G315500 Glycine max HOM05D007733 ORTHO05D009786 2.5e-18 94.7 56 75.0
PGR031G3673 Punica granatum HOM05D007733 ORTHO05D009786 3.3e-18 94.4 55 80.0
Hma1.2p1_0757F.1_g213300 Hydrangea macrophylla HOM05D007733 ORTHO05D009786 4.3e-18 94.0 55 81.8
TWI74G1577 Tripterygium wilfordii HOM05D007733 ORTHO05D009786 5.7e-18 93.6 53 83.0
Potri.016G036400 Populus trichocarpa HOM05D007733 ORTHO05D009786 7.4e-18 93.2 55 78.2
RcHm_v2.0_Chr1g0328381 Rosa chinensis HOM05D007733 ORTHO05D009786 7.4e-18 93.2 61 77.0
CSS0016184 Camellia sinensis var. sinensis HOM05D007733 ORTHO05D009786 9.7e-18 92.8 59 76.3
CSS0036430 Camellia sinensis var. sinensis HOM05D007733 ORTHO05D009786 9.7e-18 92.8 59 76.3
Gohir.A11G247101 Gossypium hirsutum HOM05D007733 ORTHO05D009786 9.7e-18 92.8 55 80.0
SGA_v2.0_scaffold105G30286 Striga asiatica HOM05D007733 ORTHO05D009786 9.7e-18 92.8 55 78.2
SGA_v2.0_scaffold3G01720 Striga asiatica HOM05D007733 ORTHO05D009786 9.7e-18 92.8 55 78.2
arahy.Tifrunner.gnm1.ann1.2TE5XM Arachis hypogaea HOM05D007733 ORTHO05D009786 1.6e-17 92.0 53 79.2
PSO384G4410 Papaver somniferum HOM05D007733 ORTHO05D009786 1.6e-17 92.0 55 76.4
RcHm_v2.0_Chr1g0328511 Rosa chinensis HOM05D007733 ORTHO05D009786 2.2e-17 91.7 56 78.6
Phvul.005G122800 Phaseolus vulgaris HOM05D007733 ORTHO05D009786 3.7e-17 90.9 56 73.2
CANSAT64G1685 Cannabis sativa HOM05D007733 ORTHO05D009786 6.3e-17 90.1 56 76.8
RcHm_v2.0_Chr1g0328411 Rosa chinensis HOM05D007733 ORTHO05D009786 6.3e-17 90.1 50 86.0
Os11g0136701 Oryza sativa ssp. japonica HOM05D007733 ORTHO05D009786 8.2e-17 89.7 54 72.2
Thhalv10015230m.g Eutrema salsugineum HOM05D007733 ORTHO05D009786 1.1e-16 89.4 54 75.9
Potri.006G039100 Populus trichocarpa HOM05D007733 ORTHO05D009786 1.1e-16 89.4 56 78.6
Aqoxy1G00180 Aquilegia oxysepala HOM05D007733 ORTHO05D009786 1.4e-16 89.0 52 78.8
BcaC03g13244 Brassica carinata HOM05D007733 ORTHO05D009786 1.8e-16 88.6 54 74.1
C02p03760 Brassica napus HOM05D007733 ORTHO05D009786 1.8e-16 88.6 54 74.1
BolC2t06337H Brassica oleracea HOM05D007733 ORTHO05D009786 1.8e-16 88.6 54 74.1
Duzib264G0681 Durio zibethinus HOM05D007733 ORTHO05D009786 1.8e-16 88.6 56 76.8
Psat4g102040 Pisum sativum HOM05D007733 ORTHO05D009786 1.8e-16 88.6 52 78.8
Aa31LG1G18010 Aethionema arabicum HOM05D007733 ORTHO05D009786 2.4e-16 88.2 52 76.9
THA.LOC104819346 Tarenaya hassleriana HOM05D007733 ORTHO05D009786 2.4e-16 88.2 56 75.0
Lsat_1_v5_gn_5_157040 Lactuca sativa HOM05D007733 ORTHO05D009786 3.1e-16 87.8 52 80.8
AT5G09225 Arabidopsis thaliana HOM05D007733 ORTHO05D009786 5.3e-16 87.0 54 74.1
BcaB05g21564 Brassica carinata HOM05D007733 ORTHO05D009786 5.3e-16 87.0 51 76.5
BraA02t04971Z Brassica rapa HOM05D007733 ORTHO05D009786 5.3e-16 87.0 51 76.5
Medtr1g069390 Medicago truncatula HOM05D007733 ORTHO05D009786 5.3e-16 87.0 52 75.0
Sp6g34080 Schrenkiella parvula HOM05D007733 ORTHO05D009786 5.3e-16 87.0 54 72.2
Carub.0006s0778 Capsella rubella HOM05D007733 ORTHO05D009786 6.9e-16 86.7 54 74.1
Os12g0133600 Oryza sativa ssp. japonica HOM05D007733 ORTHO05D009786 9.0e-16 86.3 54 68.5
AL6G19610 Arabidopsis lyrata HOM05D007733 ORTHO05D009786 1.5e-15 85.5 54 72.2
CARHR204200 Cardamine hirsuta HOM05D007733 ORTHO05D009786 2.0e-15 85.1 54 72.2
GSVIVG01004069001 Vitis vinifera HOM05D007733 ORTHO05D009786 4.5e-15 84.0 53 73.6
Thhalv10005241m.g Eutrema salsugineum HOM05D007733 ORTHO05D009786 7.7e-15 83.2 52 73.1
Nitab4.5_0000812g0080 Nicotiana tabacum HOM05D007733 ORTHO05D009786 7.7e-15 83.2 41 87.8
Nitab4.5_0004588g0050 Nicotiana tabacum HOM05D007733 ORTHO05D009786 1.0e-14 82.8 42 83.3
Sc19g0008160 Simmondsia chinensis HOM05D007733 ORTHO05D009786 2.9e-14 81.3 41 90.2
Oeu022972.2 Olea europaea HOM05D007733 ORTHO05D009786 5.0e-14 80.5 41 87.8
BraA06t25997Z Brassica rapa HOM05D007733 ORTHO05D009786 6.5e-14 80.1 52 69.2
arahy.Tifrunner.gnm1.ann1.05QC9F Arachis hypogaea HOM05D007733 ORTHO05D009786 8.5e-14 79.7 55 69.1
MBI19_g20791_MAGBIO Magnolia biondii HOM05D007733 ORTHO05D009786 1.1e-13 79.3 45 75.6
Hund24585 Selenicereus undatus HOM05D007733 ORTHO05D009786 1.1e-13 79.3 42 78.6
FAN01G2779 Fragaria x ananassa HOM05D000072 ORTHO05D000026 1.4e-13 79.0 41 87.8
Peaxi162Scf00848g00014 Petunia axillaris HOM05D007733 ORTHO05D009786 1.4e-13 79.0 41 80.5
vmacro07790 Vaccinium macrocarpon HOM05D007733 ORTHO05D009786 1.4e-13 79.0 49 75.5
Gohir.D11G257301 Gossypium hirsutum HOM05D007733 ORTHO05D009786 1.9e-13 78.6 41 85.4
Gorai.007G275700 Gossypium raimondii HOM05D007733 ORTHO05D009786 1.9e-13 78.6 41 85.4
BcaB02g09770 Brassica carinata HOM05D007733 ORTHO05D009786 2.5e-13 78.2 52 65.4
HanXRQChr01g0008231 Helianthus annuus HOM05D007733 ORTHO05D009786 2.5e-13 78.2 48 72.9
COL.COLO4_35702 Corchorus olitorius HOM05D007733 ORTHO05D009786 3.2e-13 77.8 41 82.9
SalBow7G0067 Salvia bowleyana HOM05D007733 ORTHO05D009786 3.2e-13 77.8 45 80.0
Manes.02G094502 Manihot esculenta HOM05D007733 ORTHO05D009786 4.2e-13 77.4 41 82.9
A06p30480 Brassica napus HOM05D007733 ORTHO05D009786 7.2e-13 76.6 52 67.3
BcaC01g02637 Brassica carinata HOM05D007733 ORTHO05D009786 2.1e-12 75.1 54 61.1
Peaxi162Scf00696g00024 Petunia axillaris HOM05D007733 ORTHO05D009786 2.7e-12 74.7 39 82.1
HPP92_015863 Vanilla planifolia HOM05D007733 ORTHO05D009786 7.9e-12 73.2 40 80.0
HPP92_015865 Vanilla planifolia HOM05D007733 ORTHO05D009786 7.9e-12 73.2 40 80.0
Zm00001eb093420 Zea mays HOM05D007733 ORTHO05D009786 3.0e-11 71.2 41 73.2
DCAR_027120 Daucus carota HOM05D000958 ORTHO05D000786 8.8e-11 69.7 34 88.2
Mapoly0009s0018 Marchantia polymorpha HOM05D007733 ORTHO05D009786 6.3e-09 63.5 47 59.6
RcHm_v2.0_Chr1g0328311 Rosa chinensis HOM05D007733 ORTHO05D009786 1.1e-08 62.8 34 85.3
CBR_g21252 Chara braunii HOM05D007733 ORTHO05D009786 2.6e-07 58.2 58 46.6
Gohir.A11G247151 Gossypium hirsutum HOM05D007733 ORTHO05D009786 2.9e-06 54.7 51 60.8


User provided reference genes

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