Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g19280 Coffea canephora HOM05D003812 ORTHO05D004393 4.6e-52 207.6 104 100.0
QL10p064313 Quercus lobata HOM05D003812 ORTHO05D004393 1.1e-16 90.1 103 52.4
Cfa008512 Carpinus fangiana HOM05D003812 ORTHO05D004393 1.5e-15 86.3 102 52.9
MSTRG.26255 Avicennia marina HOM05D003812 ORTHO05D004393 1.0e-14 83.6 81 56.8
vmacro06692 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 6.5e-14 80.9 81 54.3
Hma1.2p1_0381F.1_g140070 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 1.4e-13 79.7 54 66.7
Sopen12g006540 Solanum pennellii HOM05D003812 ORTHO05D004393 5.5e-13 77.8 77 51.9
Gohir.D08G113808 Gossypium hirsutum HOM05D003812 ORTHO05D004393 7.2e-13 77.4 77 50.6
Actinidia18400 Actinidia chinensis HOM05D003812 ORTHO05D004393 9.4e-13 77.0 102 47.1
CSS0041441 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 9.4e-13 77.0 78 53.8
Lsat_1_v5_gn_8_131861 Lactuca sativa HOM05D003812 ORTHO05D004393 9.4e-13 77.0 109 45.0
Thecc.03G204100 Theobroma cacao HOM05D003812 ORTHO05D004393 4.6e-12 74.7 93 49.5
Gohir.A08G102525 Gossypium hirsutum HOM05D003812 ORTHO05D004393 6.1e-12 74.3 93 48.4
ECA246G4500 Erigeron canadensis HOM05D003812 ORTHO05D004393 7.9e-12 73.9 85 49.4
Migut.K00296 Erythranthe guttata HOM05D003812 ORTHO05D004393 7.9e-12 73.9 60 55.0
Gorai.004G122600 Gossypium raimondii HOM05D003812 ORTHO05D004393 7.9e-12 73.9 77 49.4
PGSC0003DMG400007789 Solanum tuberosum HOM05D003812 ORTHO05D004393 7.9e-12 73.9 77 49.4
GSVIVG01038248001 Vitis vinifera HOM05D003812 ORTHO05D004393 1.8e-11 72.8 102 48.0
COL.COLO4_16818 Corchorus olitorius HOM05D003812 ORTHO05D004393 6.7e-11 70.9 53 66.0
RcHm_v2.0_Chr2g0084521 Rosa chinensis HOM05D003812 ORTHO05D004393 6.7e-11 70.9 101 47.5
Atru.chr3.1997_Atru.chr3.1998 Acer truncatum HOM05D003812 ORTHO05D004393 2.0e-10 69.3 94 47.9
FvH4_4g37371 Fragaria vesca HOM05D003812 ORTHO05D004393 2.5e-10 68.9 100 46.0
CAN.G164.18 Capsicum annuum HOM05D003812 ORTHO05D004393 4.3e-10 68.2 106 43.4
SalBow5G1511 Salvia bowleyana HOM05D003812 ORTHO05D004393 4.3e-10 68.2 80 45.0
SalBow5G1547 Salvia bowleyana HOM05D003812 ORTHO05D004393 4.3e-10 68.2 80 45.0
TWI63G1503 Tripterygium wilfordii HOM05D003812 ORTHO05D004393 4.3e-10 68.2 114 46.5
TAR362G0390 Trochodendron aralioides HOM05D003812 ORTHO05D004393 4.3e-10 68.2 82 48.8
Rhsim09G0003800 Rhododendron simsii HOM05D003812 ORTHO05D004393 7.4e-10 67.4 59 52.5
TAR636G0254 Trochodendron aralioides HOM05D003812 ORTHO05D004393 7.4e-10 67.4 82 48.8
DCAR_023841 Daucus carota HOM05D003812 ORTHO05D004393 9.7e-10 67.0 95 43.2
Lj4C178G3 Lonicera japonica HOM05D003812 ORTHO05D004393 9.7e-10 67.0 60 61.7
Nn1g08161 Nelumbo nucifera HOM05D003812 ORTHO05D004393 1.3e-09 66.6 77 51.9
Prupe.7G062100 Prunus persica HOM05D003812 ORTHO05D004393 1.7e-09 66.2 106 43.4
CiPaw.01G201400 Carya illinoinensis HOM05D003812 ORTHO05D004393 3.7e-09 65.1 100 42.0
Cc00_g35850 Coffea canephora HOM05D003812 ORTHO05D004393 3.7e-09 65.1 47 78.7
FAN26G2119 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.1e-08 63.5 101 42.6
Ciclev10027241m.g Citrus clementina HOM05D003812 ORTHO05D004393 1.4e-08 63.2 77 48.1
FvH4_1g00230 Fragaria vesca HOM05D003812 ORTHO05D004393 1.4e-08 63.2 101 43.6
SGA_v2.0_scaffold12G06029 Striga asiatica HOM05D003812 ORTHO05D004393 1.4e-08 63.2 102 46.1
Potri.017G007200 Populus trichocarpa HOM05D003812 ORTHO05D004393 2.4e-08 62.4 100 41.0
FAN23G1808 Fragaria x ananassa HOM05D003812 ORTHO05D004393 4.1e-08 61.6 101 43.6
MD15G1143400 Malus domestica HOM05D003812 ORTHO05D004393 4.1e-08 61.6 106 41.5
Oeu022463.3 Olea europaea HOM05D003812 ORTHO05D004393 5.3e-08 61.2 103 42.7
MBI16_g29049_MAGBIO Magnolia biondii HOM05D003812 ORTHO05D004393 9.1e-08 60.5 65 50.8
PGR142G2470 Punica granatum HOM05D003812 ORTHO05D004393 9.1e-08 60.5 74 48.6
MBI16_g46635_MAGBIO Magnolia biondii HOM05D000963 ORTHO05D005131 1.5e-07 59.7 65 49.2
Cpa.g.sc151.5 Carica papaya HOM05D003812 ORTHO05D004393 2.0e-07 59.3 102 40.2
Haze_11132 Corylus avellana HOM05D003812 ORTHO05D004393 3.4e-07 58.5 102 44.1
MELO3C026683.2 Cucumis melo HOM05D003812 ORTHO05D004393 4.5e-07 58.2 99 42.4
CsaV3_5G037130 Cucumis sativus L. HOM05D003812 ORTHO05D004393 1.7e-06 56.2 95 42.1
Manes.01G010200 Manihot esculenta HOM05D003812 ORTHO05D004393 1.7e-06 56.2 82 47.6
CANSAT54G2113 Cannabis sativa HOM05D003812 ORTHO05D004393 2.2e-06 55.8 61 49.2
Aqoxy4G02750 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 2.9e-06 55.5 59 52.5
EL10Ac3g06164 Beta vulgaris HOM05D003812 ORTHO05D004393 3.8e-06 55.1 65 47.7
CDE05G0093 Ceratophyllum demersum HOM05D003812 ORTHO05D004393 3.8e-06 55.1 70 48.6
MBI16_g47032_MAGBIO Magnolia biondii HOM05D000963 ORTHO05D005131 3.8e-06 55.1 54 51.9


User provided reference genes

Program Settings