Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g19090 Coffea canephora HOM05D005652 ORTHO05D007300 3.5e-49 198.0 99 100.0
Nitab4.5_0000943g0120 Nicotiana tabacum HOM05D005652 ORTHO05D007300 6.3e-43 177.2 90 98.9
Hund16832 Selenicereus undatus HOM05D005652 ORTHO05D007300 1.8e-42 175.6 90 96.7
MSTRG.22423 Avicennia marina HOM05D005652 ORTHO05D007300 3.1e-42 174.9 93 95.7
CiPaw.05G226800 Carya illinoinensis HOM05D005652 ORTHO05D007300 3.1e-42 174.9 90 97.8
Peaxi162Scf00408g00839 Petunia axillaris HOM05D005652 ORTHO05D007300 7.0e-42 173.7 90 98.9
Sc23g0000830 Simmondsia chinensis HOM05D005652 ORTHO05D007300 7.0e-42 173.7 90 96.7
PGSC0003DMG400029291 Solanum tuberosum HOM05D005652 ORTHO05D007300 7.0e-42 173.7 95 93.7
TWI12G1472 Tripterygium wilfordii HOM05D005652 ORTHO05D007300 7.0e-42 173.7 90 98.9
Dinv27358 Davidia involucrata HOM05D005652 ORTHO05D007300 1.2e-41 172.9 89 96.6
Nitab4.5_0000030g0080 Nicotiana tabacum HOM05D005652 ORTHO05D007300 1.2e-41 172.9 92 96.7
Oeu050252.1 Olea europaea HOM05D005652 ORTHO05D007300 1.2e-41 172.9 92 95.7
Oeu050889.1 Olea europaea HOM05D005652 ORTHO05D007300 1.2e-41 172.9 88 97.7
PGSC0003DMG400030853 Solanum tuberosum HOM05D005652 ORTHO05D007300 2.0e-41 172.2 93 95.7
Potri.002G087200 Populus trichocarpa HOM05D005652 ORTHO05D007300 2.7e-41 171.8 89 96.6
PGR042G1865 Punica granatum HOM05D005652 ORTHO05D007300 2.7e-41 171.8 88 96.6
Sabra02G0068700 Salix brachista HOM05D005652 ORTHO05D007300 2.7e-41 171.8 89 96.6
SalBow7G3105 Salvia bowleyana HOM05D005652 ORTHO05D007300 2.7e-41 171.8 94 93.6
TWI56G0667 Tripterygium wilfordii HOM05D005652 ORTHO05D007300 3.5e-41 171.4 90 97.8
Ca_19025_v3 Cicer arietinum L. HOM05D005652 ORTHO05D007300 4.5e-41 171.0 91 94.5
Ca_26775_v3 Cicer arietinum L. HOM05D005652 ORTHO05D007300 4.5e-41 171.0 91 94.5
Migut.N03303 Erythranthe guttata HOM05D005652 ORTHO05D007300 4.5e-41 171.0 91 96.7
Hma1.2p1_0009F.1_g006210 Hydrangea macrophylla HOM05D005652 ORTHO05D007300 4.5e-41 171.0 90 97.8
Manes.18G074500 Manihot esculenta HOM05D005652 ORTHO05D007300 5.9e-41 170.6 89 96.6
Potri.005G173800 Populus trichocarpa HOM05D005652 ORTHO05D007300 5.9e-41 170.6 89 95.5
Solyc12g096120.2 Solanum lycopersicum HOM05D005652 ORTHO05D007300 5.9e-41 170.6 94 93.6
Sopen12g032000 Solanum pennellii HOM05D005652 ORTHO05D007300 5.9e-41 170.6 94 93.6
arahy.Tifrunner.gnm1.ann1.AJPJ4J Arachis hypogaea HOM05D005652 ORTHO05D007300 7.7e-41 170.2 86 98.8
ClCG03G009400 Citrullus lanatus HOM05D005652 ORTHO05D007300 7.7e-41 170.2 88 96.6
Ciclev10002945m.g Citrus clementina HOM05D005652 ORTHO05D007300 7.7e-41 170.2 86 98.8
MELO3C003038.2 Cucumis melo HOM05D005652 ORTHO05D007300 7.7e-41 170.2 88 96.6
CsaV3_5G023210 Cucumis sativus L. HOM05D005652 ORTHO05D007300 7.7e-41 170.2 88 96.6
Peaxi162Scf00876g00433 Petunia axillaris HOM05D005652 ORTHO05D007300 7.7e-41 170.2 92 95.7
Sed0000902 Sechium edule HOM05D005652 ORTHO05D007300 7.7e-41 170.2 88 96.6
TPR.G8501 Trifolium pratense HOM05D005652 ORTHO05D007300 7.7e-41 170.2 97 90.7
unitig_37.g12684 Utricularia gibba HOM05D005652 ORTHO05D007300 7.7e-41 170.2 87 97.7
CSS0012578 Camellia sinensis var. sinensis HOM05D005652 ORTHO05D007300 1.0e-40 169.9 90 96.7
Medtr5g059210 Medicago truncatula HOM05D005652 ORTHO05D007300 1.0e-40 169.9 90 96.7
Psat2g096080 Pisum sativum HOM05D005652 ORTHO05D007300 1.0e-40 169.9 90 96.7
Solyc08g075780.4 Solanum lycopersicum HOM05D005652 ORTHO05D007300 1.0e-40 169.9 93 94.6
Zm00001eb140360 Zea mays HOM05D005652 ORTHO05D007300 1.0e-40 169.9 89 93.3
Glyma.14G163800 Glycine max HOM05D005652 ORTHO05D007300 1.3e-40 169.5 85 98.8
Nn5g28127 Nelumbo nucifera HOM05D005652 ORTHO05D007300 1.3e-40 169.5 86 98.8
Nitab4.5_0014082g0020 Nicotiana tabacum HOM05D005652 ORTHO05D007300 1.3e-40 169.5 94 93.6
Atru.chr13.1343 Acer truncatum HOM05D005652 ORTHO05D007300 1.7e-40 169.1 86 97.7
CDE06G1598 Ceratophyllum demersum HOM05D005652 ORTHO05D007300 1.7e-40 169.1 85 98.8
CDE08G1473 Ceratophyllum demersum HOM05D005652 ORTHO05D007300 1.7e-40 169.1 85 98.8
HanXRQChr14g0432351 Helianthus annuus HOM05D005652 ORTHO05D007300 1.7e-40 169.1 86 97.7
GSVIVG01008919001 Vitis vinifera HOM05D005652 ORTHO05D007300 1.7e-40 169.1 88 96.6
CANSAT54G2625 Cannabis sativa HOM05D005652 ORTHO05D007300 2.3e-40 168.7 84 100.0
Duzib041G0199 Durio zibethinus HOM05D005652 ORTHO05D007300 2.3e-40 168.7 84 100.0
Duzib093G1773 Durio zibethinus HOM05D005652 ORTHO05D007300 2.3e-40 168.7 84 100.0
Glyma.04G252400 Glycine max HOM05D005652 ORTHO05D007300 2.3e-40 168.7 84 100.0
Glyma.06G110100 Glycine max HOM05D005652 ORTHO05D007300 2.3e-40 168.7 84 100.0
Gohir.A06G041900 Gossypium hirsutum HOM05D005652 ORTHO05D007300 2.3e-40 168.7 84 100.0
Gohir.D06G042900 Gossypium hirsutum HOM05D005652 ORTHO05D007300 2.3e-40 168.7 84 100.0
Gorai.005G091100 Gossypium raimondii HOM05D005652 ORTHO05D007300 2.3e-40 168.7 84 100.0
Gorai.010G048100 Gossypium raimondii HOM05D005652 ORTHO05D007300 2.3e-40 168.7 84 100.0
Lj1g0016776 Lotus japonicus HOM05D005652 ORTHO05D007300 2.3e-40 168.7 84 100.0
Lalb_Chr08g0241571 Lupinus albus HOM05D005652 ORTHO05D007300 2.3e-40 168.7 84 100.0
Lalb_Chr23g0270881 Lupinus albus HOM05D005652 ORTHO05D007300 2.3e-40 168.7 84 100.0
MBI09_g06382_MAGBIO Magnolia biondii HOM05D005652 ORTHO05D007300 2.3e-40 168.7 86 97.7
MD08G1169400 Malus domestica HOM05D005652 ORTHO05D007300 2.3e-40 168.7 84 100.0
MD15G1356000 Malus domestica HOM05D005652 ORTHO05D007300 2.3e-40 168.7 84 100.0
Phvul.009G121900 Phaseolus vulgaris HOM05D005652 ORTHO05D007300 2.3e-40 168.7 84 100.0
RcHm_v2.0_Chr6g0294951 Rosa chinensis HOM05D005652 ORTHO05D007300 2.3e-40 168.7 84 100.0
Hund27043 Selenicereus undatus HOM05D005652 ORTHO05D007300 2.3e-40 168.7 92 93.5
THA.LOC104813142 Tarenaya hassleriana HOM05D005652 ORTHO05D007300 2.3e-40 168.7 84 100.0
THA.LOC104817112 Tarenaya hassleriana HOM05D005652 ORTHO05D007300 2.3e-40 168.7 84 100.0
Thecc.08G119900 Theobroma cacao HOM05D005652 ORTHO05D007300 2.3e-40 168.7 84 100.0
EL10Ac1g00017 Beta vulgaris HOM05D005652 ORTHO05D007300 2.9e-40 168.3 93 92.5
ECA238G1260 Erigeron canadensis HOM05D005652 ORTHO05D007300 2.9e-40 168.3 87 96.6
Lsat_1_v5_gn_5_65281 Lactuca sativa HOM05D005652 ORTHO05D007300 2.9e-40 168.3 90 93.3
AL2G37930 Arabidopsis lyrata HOM05D005652 ORTHO05D007300 3.8e-40 167.9 90 94.4
arahy.Tifrunner.gnm1.ann1.KZ1VTZ Arachis hypogaea HOM05D005652 ORTHO05D007300 3.8e-40 167.9 86 97.7
BcaB05g25069 Brassica carinata HOM05D005652 ORTHO05D007300 3.8e-40 167.9 90 94.4
Aqoxy6G01736 Aquilegia oxysepala HOM05D005652 ORTHO05D007300 5.0e-40 167.5 84 98.8
FAN20G1151 Fragaria x ananassa HOM05D005652 ORTHO05D007300 5.0e-40 167.5 84 98.8
FAN24G1202 Fragaria x ananassa HOM05D000102 ORTHO05D003793 5.0e-40 167.5 84 98.8
FAN27G1241 Fragaria x ananassa HOM05D005652 ORTHO05D007300 5.0e-40 167.5 84 98.8
Nitab4.5_0013867g0020 Nicotiana tabacum HOM05D005652 ORTHO05D007300 5.0e-40 167.5 91 94.5
Prupe.1G503300 Prunus persica HOM05D005652 ORTHO05D007300 5.0e-40 167.5 84 98.8
TAR376G0464 Trochodendron aralioides HOM05D005652 ORTHO05D007300 5.0e-40 167.5 84 98.8
Aa31LG4G7830 Aethionema arabicum HOM05D005652 ORTHO05D007300 8.6e-40 166.8 84 97.6
ATR0041G005 Amborella trichopoda HOM05D005652 ORTHO05D007300 8.6e-40 166.8 84 98.8
AT1G77710 Arabidopsis thaliana HOM05D005652 ORTHO05D007300 8.6e-40 166.8 84 97.6
BcaB02g07127 Brassica carinata HOM05D005652 ORTHO05D007300 8.6e-40 166.8 84 97.6
BcaC03g15763 Brassica carinata HOM05D005652 ORTHO05D007300 8.6e-40 166.8 84 97.6
BcaC08g45458 Brassica carinata HOM05D005652 ORTHO05D007300 8.6e-40 166.8 84 97.6
A07p27870 Brassica napus HOM05D005652 ORTHO05D007300 8.6e-40 166.8 84 97.6
C06p30860 Brassica napus HOM05D005652 ORTHO05D007300 8.6e-40 166.8 84 97.6
BolC6t38248H Brassica oleracea HOM05D005652 ORTHO05D007300 8.6e-40 166.8 84 97.6
BraA07t30426Z Brassica rapa HOM05D005652 ORTHO05D007300 8.6e-40 166.8 84 97.6
Carub.0002s2459 Capsella rubella HOM05D005652 ORTHO05D007300 8.6e-40 166.8 84 97.6
CARHR071220 Cardamine hirsuta HOM05D005652 ORTHO05D007300 8.6e-40 166.8 84 97.6
Gohir.A02G074200 Gossypium hirsutum HOM05D005652 ORTHO05D007300 8.6e-40 166.8 84 98.8
Sp5g32880 Schrenkiella parvula HOM05D005652 ORTHO05D007300 8.6e-40 166.8 84 97.6
CAN.G1483.5 Capsicum annuum HOM05D005652 ORTHO05D007300 1.1e-39 166.4 83 100.0
FvH4_2g26390 Fragaria vesca HOM05D005652 ORTHO05D007300 1.1e-39 166.4 84 97.6
PSO170G5049 Papaver somniferum HOM05D005652 ORTHO05D007300 1.1e-39 166.4 84 98.8
PSO528G0083 Papaver somniferum HOM05D005652 ORTHO05D007300 1.1e-39 166.4 84 98.8
Ah.05g172270 Amaranthus hybridus HOM05D005652 ORTHO05D007300 1.9e-39 165.6 94 90.4
Thhalv10019370m.g Eutrema salsugineum HOM05D005652 ORTHO05D007300 1.9e-39 165.6 84 96.4
Haze_00495 Corylus avellana HOM05D000102 ORTHO05D003793 2.5e-39 165.2 95 90.5
Gohir.D02G081400 Gossypium hirsutum HOM05D005652 ORTHO05D007300 2.5e-39 165.2 84 98.8
MSTRG.1473 Avicennia marina HOM05D005652 ORTHO05D007300 3.2e-39 164.9 83 98.8
Eucgr.F03755 Eucalyptus grandis HOM05D005652 ORTHO05D007300 5.5e-39 164.1 82 100.0
Os01g0962400 Oryza sativa ssp. japonica HOM05D005652 ORTHO05D007300 7.2e-39 163.7 83 97.6
SGA_v2.0_scaffold24G10489 Striga asiatica HOM05D005652 ORTHO05D007300 1.2e-38 162.9 92 92.4
Pp3c6_16720 Physcomitrium patens HOM05D005652 ORTHO05D007300 2.1e-38 162.2 83 96.4
Mapoly0081s0039 Marchantia polymorpha HOM05D005652 ORTHO05D007300 4.7e-38 161.0 83 95.2
AagrBONN_evm.TU.Sc2ySwM_362.1619 Anthoceros agrestis HOM05D005652 ORTHO05D007300 6.1e-38 160.6 84 92.9
CBR_g44443 Chara braunii HOM05D005652 ORTHO05D007300 6.1e-38 160.6 90 88.9
Migut.C01167 Erythranthe guttata HOM05D005652 ORTHO05D007300 1.0e-37 159.8 81 98.8
SMO147G0269 Selaginella moellendorffii HOM05D005652 ORTHO05D007300 1.4e-37 159.5 85 91.8
FAN15G0151 Fragaria x ananassa HOM05D000102 ORTHO05D003793 3.7e-35 151.4 108 75.9
Actinidia02604 Actinidia chinensis HOM05D005652 ORTHO05D007300 4.9e-35 151.0 102 79.4
QL09p036189 Quercus lobata HOM05D005652 ORTHO05D007300 3.6e-30 134.8 180 49.4
Haze_27250 Corylus avellana HOM05D005652 ORTHO05D007300 4.7e-30 134.4 80 78.8
Oeu026729.1 Olea europaea HOM05D005652 ORTHO05D007300 1.8e-29 132.5 71 97.2
Rhsim11G0066600 Rhododendron simsii HOM05D005652 ORTHO05D007300 4.0e-29 131.3 68 95.6
PRCOL_00001930 Prasinoderma coloniale HOM05D005652 ORTHO05D007300 1.2e-28 129.8 81 84.0
CAN.G947.38 Capsicum annuum HOM05D005652 ORTHO05D007300 1.5e-28 129.4 64 100.0
AUR62023629 Chenopodium quinoa HOM05D000102 ORTHO05D003793 4.4e-28 127.9 63 100.0
SalBow7G1395 Salvia bowleyana HOM05D005652 ORTHO05D007300 1.7e-27 125.9 73 90.4
Glyma.13G082800 Glycine max HOM05D005652 ORTHO05D007300 2.2e-27 125.6 64 96.9
HPP92_028057 Vanilla planifolia HOM05D005652 ORTHO05D007300 7.8e-25 117.1 84 77.4
AUR62004713 Chenopodium quinoa HOM05D005652 ORTHO05D007300 3.6e-22 108.2 57 94.7
Cpa.g.sc36.14 Carica papaya HOM05D005652 ORTHO05D007300 3.1e-21 105.1 62 88.7
COL.COLO4_38344 Corchorus olitorius HOM05D005652 ORTHO05D007300 6.8e-21 104.0 52 100.0
Oeu062544.1 Olea europaea HOM05D005652 ORTHO05D007300 5.8e-20 100.9 62 87.1
Sed0022236 Sechium edule HOM05D005652 ORTHO05D007300 2.9e-19 98.6 98 60.2
BraA02t07181Z Brassica rapa HOM05D005652 ORTHO05D007300 1.4e-18 96.3 64 79.7
Actinidia13808 Actinidia chinensis HOM05D005652 ORTHO05D007300 1.2e-17 93.2 50 92.0
BolC2t09520H Brassica oleracea HOM05D005652 ORTHO05D007300 2.7e-17 92.0 45 95.6
AagrBONN_evm.TU.Sc2ySwM_344.240 Anthoceros agrestis HOM05D005652 ORTHO05D007300 2.2e-11 72.4 41 85.4
TAR381G0412 Trochodendron aralioides HOM05D000102 ORTHO05D003793 1.0e-08 63.5 32 96.9
Dinv20715 Davidia involucrata HOM05D005652 ORTHO05D185765 3.3e-07 58.5 39 76.9
Actinidia03505 Actinidia chinensis HOM05D005652 ORTHO05D054027 9.5e-07 57.0 78 50.0
Actinidia34351 Actinidia chinensis HOM05D005652 ORTHO05D057191 4.7e-06 54.7 32 81.2


User provided reference genes

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