Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g18750 Coffea canephora HOM05D003793 ORTHO05D004471 2.7e-143 511.9 250 100.0
Cc06_g18700 Coffea canephora HOM05D003793 ORTHO05D004471 2.3e-89 332.8 209 81.3
Cc06_g18710 Coffea canephora HOM05D003793 ORTHO05D004471 7.4e-72 274.6 177 75.7
Nitab4.5_0000411g0010 Nicotiana tabacum HOM05D003793 ORTHO05D004471 1.0e-52 211.1 208 52.9
Migut.J00551 Erythranthe guttata HOM05D003793 ORTHO05D004471 1.3e-52 210.7 206 52.4
CAN.G726.8 Capsicum annuum HOM05D003793 ORTHO05D004471 5.0e-52 208.8 208 52.4
Lj3A883G46 Lonicera japonica HOM05D003793 ORTHO05D004471 8.5e-52 208.0 208 52.4
MD12G1017400 Malus domestica HOM05D003793 ORTHO05D004471 3.2e-51 206.1 208 51.9
MD14G1015100 Malus domestica HOM05D003793 ORTHO05D004471 7.2e-51 204.9 208 51.9
FvH4_6g17810 Fragaria vesca HOM05D003793 ORTHO05D004471 1.2e-50 204.1 208 51.9
FAN02G3282 Fragaria x ananassa HOM05D003793 ORTHO05D004471 1.2e-50 204.1 208 51.9
FAN05G0338 Fragaria x ananassa HOM05D003793 ORTHO05D004471 1.2e-50 204.1 208 51.9
Nn1g09155 Nelumbo nucifera HOM05D003793 ORTHO05D004471 1.6e-50 203.8 208 50.0
Cc11_g00040 Coffea canephora HOM05D003793 ORTHO05D004471 2.1e-50 203.4 208 51.4
Solyc08g076360.4 Solanum lycopersicum HOM05D003793 ORTHO05D004471 2.7e-50 203.0 207 50.7
HanXRQChr08g0217461 Helianthus annuus HOM05D003793 ORTHO05D004471 3.6e-50 202.6 208 50.5
HanXRQChr08g0217471 Helianthus annuus HOM05D003793 ORTHO05D004471 3.6e-50 202.6 208 50.5
HanXRQChr08g0217581 Helianthus annuus HOM05D003793 ORTHO05D004471 3.6e-50 202.6 208 50.5
TAR375G0772 Trochodendron aralioides HOM05D003793 ORTHO05D004471 7.9e-50 201.4 208 49.0
Hma1.2p1_0419F.1_g149530 Hydrangea macrophylla HOM05D003793 ORTHO05D004471 1.0e-49 201.1 207 48.8
unitig_578.g15801 Utricularia gibba HOM05D003793 ORTHO05D004471 1.0e-49 201.1 206 50.5
Thecc.05G223100 Theobroma cacao HOM05D003793 ORTHO05D004471 3.0e-49 199.5 208 49.0
TWI60G0578 Tripterygium wilfordii HOM05D003793 ORTHO05D004471 3.9e-49 199.1 208 50.5
Cfa016078 Carpinus fangiana HOM05D003793 ORTHO05D004471 5.1e-49 198.7 208 50.0
Sc13g0011010 Simmondsia chinensis HOM05D003793 ORTHO05D004471 5.1e-49 198.7 208 47.6
Rhsim09G0190300 Rhododendron simsii HOM05D003793 ORTHO05D004471 8.7e-49 198.0 207 48.8
RcHm_v2.0_Chr3g0472061 Rosa chinensis HOM05D003793 ORTHO05D004471 8.7e-49 198.0 208 51.0
Nitab4.5_0004045g0040 Nicotiana tabacum HOM05D003793 ORTHO05D004471 1.5e-48 197.2 236 46.2
Aqoxy6G01754 Aquilegia oxysepala HOM05D003793 ORTHO05D004471 1.9e-48 196.8 208 48.1
Dinv29122 Davidia involucrata HOM05D003793 ORTHO05D004471 1.9e-48 196.8 208 49.0
Hund26874 Selenicereus undatus HOM05D003793 ORTHO05D004471 2.5e-48 196.4 207 48.3
Actinidia33800 Actinidia chinensis HOM05D003793 ORTHO05D004471 3.3e-48 196.1 206 48.1
Duzib106G1724 Durio zibethinus HOM05D003793 ORTHO05D004471 3.3e-48 196.1 208 48.1
Eucgr.K00068 Eucalyptus grandis HOM05D003793 ORTHO05D004471 3.3e-48 196.1 207 48.3
Hund00468 Selenicereus undatus HOM05D003793 ORTHO05D004471 3.3e-48 196.1 207 48.3
Haze_00367 Corylus avellana HOM05D003793 ORTHO05D004471 4.3e-48 195.7 208 49.0
Aa31LG2G2160 Aethionema arabicum HOM05D003793 ORTHO05D004471 5.7e-48 195.3 206 48.5
Zm00001eb251860 Zea mays HOM05D003793 ORTHO05D004471 5.7e-48 195.3 206 50.0
ECA233G1952 Erigeron canadensis HOM05D003793 ORTHO05D004471 7.4e-48 194.9 206 49.0
VMungo1127G2010 Vigna mungo HOM05D003793 ORTHO05D004471 7.4e-48 194.9 205 50.2
Cpa.g.sc43.146 Carica papaya HOM05D003793 ORTHO05D004471 9.7e-48 194.5 208 48.1
Prupe.7G118300 Prunus persica HOM05D003793 ORTHO05D004471 9.7e-48 194.5 208 48.6
QL09p020586 Quercus lobata HOM05D003793 ORTHO05D004471 1.3e-47 194.1 207 47.3
VMungo1127G0200 Vigna mungo HOM05D003793 ORTHO05D004471 1.3e-47 194.1 208 48.6
Atru.chr12.1860 Acer truncatum HOM05D003793 ORTHO05D004471 1.6e-47 193.7 208 47.6
Glyma.09G222800 Glycine max HOM05D003793 ORTHO05D004471 1.6e-47 193.7 208 49.0
Gohir.D03G055300 Gossypium hirsutum HOM05D003793 ORTHO05D004471 1.6e-47 193.7 208 46.6
HanXRQChr11g0342111 Helianthus annuus HOM05D003793 ORTHO05D004471 1.6e-47 193.7 208 48.1
Lsat_1_v5_gn_2_104420 Lactuca sativa HOM05D003793 ORTHO05D004471 2.8e-47 193.0 208 47.1
Aqoxy6G01753 Aquilegia oxysepala HOM05D003793 ORTHO05D004471 3.7e-47 192.6 208 47.1
arahy.Tifrunner.gnm1.ann1.SYC9J3 Arachis hypogaea HOM05D003793 ORTHO05D004471 3.7e-47 192.6 208 47.6
arahy.Tifrunner.gnm1.ann1.TXPN3Z Arachis hypogaea HOM05D003793 ORTHO05D004471 3.7e-47 192.6 208 47.6
Ca_13083_v3 Cicer arietinum L. HOM05D003793 ORTHO05D004471 3.7e-47 192.6 207 47.8
Duzib177G0459 Durio zibethinus HOM05D003793 ORTHO05D004471 3.7e-47 192.6 208 47.1
PSO210G3154 Papaver somniferum HOM05D003793 ORTHO05D004471 3.7e-47 192.6 208 45.7
Ah.04g156140 Amaranthus hybridus HOM05D003793 ORTHO05D004471 4.8e-47 192.2 208 48.1
PSO210G3487 Papaver somniferum HOM05D003793 ORTHO05D004471 4.8e-47 192.2 208 45.7
A02p12940 Brassica napus HOM05D003793 ORTHO05D004471 6.3e-47 191.8 206 48.1
BraA02t06348Z Brassica rapa HOM05D003793 ORTHO05D004471 6.3e-47 191.8 206 48.1
AUR62028213 Chenopodium quinoa HOM05D003793 ORTHO05D004471 6.3e-47 191.8 208 48.6
ClCG02G007700 Citrullus lanatus HOM05D003793 ORTHO05D004471 6.3e-47 191.8 208 47.6
Gohir.A02G114300 Gossypium hirsutum HOM05D003793 ORTHO05D004471 6.3e-47 191.8 208 46.6
Gorai.003G058100 Gossypium raimondii HOM05D003793 ORTHO05D004471 6.3e-47 191.8 209 46.9
Phvul.011G017200 Phaseolus vulgaris HOM05D003793 ORTHO05D004471 6.3e-47 191.8 208 48.1
GSVIVG01024322001 Vitis vinifera HOM05D003793 ORTHO05D004471 6.3e-47 191.8 208 47.6
Aa31LG2G2170 Aethionema arabicum HOM05D003793 ORTHO05D004471 8.2e-47 191.4 206 48.1
arahy.Tifrunner.gnm1.ann1.L925XS Arachis hypogaea HOM05D003793 ORTHO05D004471 8.2e-47 191.4 208 47.6
Os02g0701600 Oryza sativa ssp. japonica HOM05D003793 ORTHO05D004471 1.1e-46 191.0 207 47.3
vmacro22191 Vaccinium macrocarpon HOM05D003793 ORTHO05D004471 1.1e-46 191.0 206 48.1
arahy.Tifrunner.gnm1.ann1.5NG4EY Arachis hypogaea HOM05D003793 ORTHO05D004471 1.8e-46 190.3 208 47.6
EL10Ac3g05040 Beta vulgaris HOM05D003793 ORTHO05D004471 4.1e-46 189.1 208 46.2
CiPaw.05G212400 Carya illinoinensis HOM05D003793 ORTHO05D004471 4.1e-46 189.1 205 47.3
BcaB05g24071 Brassica carinata HOM05D003793 ORTHO05D004471 5.3e-46 188.7 206 47.6
Medtr1g014690 Medicago truncatula HOM05D003793 ORTHO05D004471 6.9e-46 188.3 207 46.9
TPR.G38857 Trifolium pratense HOM05D003793 ORTHO05D004471 6.9e-46 188.3 207 45.9
AT1G64970 Arabidopsis thaliana HOM05D003793 ORTHO05D004471 9.1e-46 188.0 206 47.6
BcaC03g16025 Brassica carinata HOM05D003793 ORTHO05D004471 9.1e-46 188.0 206 47.1
C02p37750 Brassica napus HOM05D003793 ORTHO05D004471 9.1e-46 188.0 206 47.1
BolC2t09793H Brassica oleracea HOM05D003793 ORTHO05D004471 9.1e-46 188.0 206 47.1
Lj3g0009427 Lotus japonicus HOM05D003793 ORTHO05D004471 9.1e-46 188.0 207 45.9
Sabra13G0066000 Salix brachista HOM05D003793 ORTHO05D004471 9.1e-46 188.0 208 46.2
Sp5g19260 Schrenkiella parvula HOM05D003793 ORTHO05D004471 9.1e-46 188.0 206 47.6
BraA02t07388Z Brassica rapa HOM05D003793 ORTHO05D004471 1.2e-45 187.6 206 47.1
Carub.0002s1011 Capsella rubella HOM05D003793 ORTHO05D004471 1.2e-45 187.6 206 47.6
MELO3C024736.2 Cucumis melo HOM05D003793 ORTHO05D004471 1.2e-45 187.6 208 47.1
Gohir.D13G162300 Gossypium hirsutum HOM05D003793 ORTHO05D004471 1.2e-45 187.6 206 46.1
THA.LOC104805718 Tarenaya hassleriana HOM05D003793 ORTHO05D004471 1.2e-45 187.6 208 47.6
C02p21050 Brassica napus HOM05D003793 ORTHO05D004471 1.5e-45 187.2 206 47.1
Thhalv10018768m.g Eutrema salsugineum HOM05D003793 ORTHO05D004471 1.5e-45 187.2 206 47.6
Glyma.12G014200 Glycine max HOM05D003793 ORTHO05D004471 1.5e-45 187.2 208 47.6
Sed0025175 Sechium edule HOM05D003793 ORTHO05D004471 1.5e-45 187.2 208 46.6
FAN05G4652 Fragaria x ananassa HOM05D003793 ORTHO05D004471 2.0e-45 186.8 172 56.4
Gorai.013G184400 Gossypium raimondii HOM05D003793 ORTHO05D004471 2.0e-45 186.8 206 46.1
Phvul.011G017100 Phaseolus vulgaris HOM05D003793 ORTHO05D004471 2.0e-45 186.8 205 47.8
Psat6g024400 Pisum sativum HOM05D003793 ORTHO05D004471 2.6e-45 186.4 207 46.4
Potri.013G077000 Populus trichocarpa HOM05D003793 ORTHO05D004471 2.6e-45 186.4 208 45.7
Glyma.12G014300 Glycine max HOM05D003793 ORTHO05D004471 3.4e-45 186.0 208 46.6
BolC2t08246H Brassica oleracea HOM05D003793 ORTHO05D004471 4.5e-45 185.7 206 46.6
CsaV3_2G036010 Cucumis sativus L. HOM05D003793 ORTHO05D004471 4.5e-45 185.7 208 46.2
Duzib177G0347 Durio zibethinus HOM05D003793 ORTHO05D004471 4.5e-45 185.7 208 46.2
THA.LOC104821707 Tarenaya hassleriana HOM05D003793 ORTHO05D004471 5.9e-45 185.3 208 47.6
Ciclev10005360m.g Citrus clementina HOM05D003793 ORTHO05D004471 7.7e-45 184.9 208 45.2
Ciclev10032026m.g Citrus clementina HOM05D003793 ORTHO05D004471 7.7e-45 184.9 208 45.2
BcaC03g14668 Brassica carinata HOM05D003793 ORTHO05D004471 1.0e-44 184.5 210 45.7
Lalb_Chr05g0211181 Lupinus albus HOM05D003793 ORTHO05D004471 1.0e-44 184.5 207 46.4
Atru.chr12.1866 Acer truncatum HOM05D003793 ORTHO05D004471 1.3e-44 184.1 207 46.4
AL2G19520 Arabidopsis lyrata HOM05D003793 ORTHO05D004471 1.3e-44 184.1 206 46.6
HPP92_022760 Vanilla planifolia HOM05D003793 ORTHO05D004471 1.3e-44 184.1 208 46.2
PGR142G3821 Punica granatum HOM05D003793 ORTHO05D004471 2.9e-44 183.0 208 46.6
Manes.08G160400 Manihot esculenta HOM05D003793 ORTHO05D004471 5.0e-44 182.2 208 45.2
CARHR056370 Cardamine hirsuta HOM05D003793 ORTHO05D004471 6.5e-44 181.8 206 46.1
Lsat_1_v5_gn_8_24121 Lactuca sativa HOM05D003793 ORTHO05D004471 6.5e-44 181.8 172 54.7
SEGI_24486 Sequoiadendron giganteum HOM05D003793 ORTHO05D004471 8.5e-44 181.4 206 46.1
ATR0829G208 Amborella trichopoda HOM05D003793 ORTHO05D004471 1.1e-43 181.0 208 45.7
CDE11G0124 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 1.1e-43 181.0 206 46.1
HPP92_027670 Vanilla planifolia HOM05D003793 ORTHO05D004471 4.2e-43 179.1 208 45.2
A02p23940 Brassica napus HOM05D003793 ORTHO05D004471 5.5e-43 178.7 206 45.6
CDE02G3720 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 1.2e-42 177.6 206 43.2
CANSAT21G0915 Cannabis sativa HOM05D003793 ORTHO05D004471 1.6e-42 177.2 206 45.6
CDE12G0793 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 2.1e-42 176.8 206 45.6
Nn3g21149 Nelumbo nucifera HOM05D003793 ORTHO05D004471 7.9e-42 174.9 214 44.4
COL.COLO4_15127 Corchorus olitorius HOM05D003793 ORTHO05D004471 1.4e-41 174.1 172 51.7
QL09p020551 Quercus lobata HOM05D003793 ORTHO05D004471 1.4e-41 174.1 172 50.6
SalBow3G1300 Salvia bowleyana HOM05D003793 ORTHO05D004471 1.8e-41 173.7 171 49.1
FAN14G1236 Fragaria x ananassa HOM05D003793 ORTHO05D004471 5.1e-41 172.2 173 49.7
vmacro09916 Vaccinium macrocarpon HOM05D003793 ORTHO05D004471 8.8e-41 171.4 198 46.0
MSTRG.5738 Avicennia marina HOM05D003793 ORTHO05D004471 1.1e-40 171.0 175 47.4
Actinidia34215 Actinidia chinensis HOM05D003793 ORTHO05D004471 1.5e-40 170.6 172 49.4
Gohir.A13G157500 Gossypium hirsutum HOM05D003793 ORTHO05D004471 2.0e-40 170.2 172 50.6
PGR142G4176 Punica granatum HOM05D003793 ORTHO05D004471 5.7e-40 168.7 208 40.9
Pp3c11_23800 Physcomitrium patens HOM05D003793 ORTHO05D004471 1.7e-39 167.2 205 42.9
AagrBONN_evm.TU.Sc2ySwM_362.1718 Anthoceros agrestis HOM05D003793 ORTHO05D004471 4.8e-39 165.6 208 42.3
SGA_v2.0_scaffold126G33927 Striga asiatica HOM05D003793 ORTHO05D004471 4.8e-39 165.6 172 52.3
Mapoly0025s0046 Marchantia polymorpha HOM05D003793 ORTHO05D004471 2.4e-38 163.3 205 41.0
SMO145G0054 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 2.0e-37 160.2 207 39.6
PGR142G3948 Punica granatum HOM05D003793 ORTHO05D004471 2.6e-37 159.8 208 39.9
SalBow3G2252 Salvia bowleyana HOM05D003793 ORTHO05D004471 5.9e-37 158.7 154 50.0
Mapoly0921s0001 Marchantia polymorpha HOM05D003793 ORTHO05D004471 1.3e-36 157.5 205 40.0
ATR0829G050 Amborella trichopoda HOM05D003793 ORTHO05D004471 2.9e-36 156.4 208 39.4
Peaxi162Scf00052g00016 Petunia axillaris HOM05D003793 ORTHO05D004471 9.4e-35 151.4 139 54.0
CDE01G0103 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 1.6e-34 150.6 166 45.2
Oeu027984.2 Olea europaea HOM05D003793 ORTHO05D004471 6.1e-34 148.7 139 54.0
Cre09.g393400 Chlamydomonas reinhardtii HOM05D003793 ORTHO05D004471 3.9e-33 146.0 207 38.6
Rhsim09G0214000 Rhododendron simsii HOM05D003793 ORTHO05D004471 3.3e-32 142.9 209 39.7
CDE11G0369 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 9.7e-32 141.4 146 45.9
MCO16G568 Micromonas commoda HOM05D003793 ORTHO05D004471 1.3e-31 141.0 203 37.9
Nitab4.5_0001475g0030 Nicotiana tabacum HOM05D003793 ORTHO05D004471 2.2e-31 140.2 188 39.4
SMO115G0333 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 2.8e-31 139.8 209 34.9
SMO119G0172 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 3.7e-31 139.4 209 34.9
Oeu001351.2 Olea europaea HOM05D003793 ORTHO05D004471 1.4e-30 137.5 148 45.9
Hund00469 Selenicereus undatus HOM05D003793 ORTHO05D004471 1.4e-30 137.5 114 60.5
PGR142G2095 Punica granatum HOM05D003793 ORTHO05D004471 1.8e-30 137.1 171 42.1
SMO351G0374 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 2.4e-30 136.7 209 34.0
FAN09G3950 Fragaria x ananassa HOM05D003793 ORTHO05D004471 1.2e-29 134.4 144 47.2
HPP92_027662 Vanilla planifolia HOM05D003793 ORTHO05D004471 5.0e-28 129.0 139 48.9
ECA238G4812 Erigeron canadensis HOM05D003793 ORTHO05D004471 7.2e-27 125.2 169 43.8
SMO119G0398 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 4.0e-25 119.4 209 30.1
AUR62002095 Chenopodium quinoa HOM05D003793 ORTHO05D004471 1.8e-22 110.5 170 39.4
Mapoly0008s0048 Marchantia polymorpha HOM05D003793 ORTHO05D004471 2.9e-20 103.2 146 35.6
arahy.Tifrunner.gnm1.ann1.V58P3M Arachis hypogaea HOM05D003793 ORTHO05D004471 4.2e-19 99.4 69 63.8
Mapoly0013s0102 Marchantia polymorpha HOM05D003793 ORTHO05D004471 7.2e-19 98.6 141 34.8
CBR_g28039 Chara braunii HOM05D003793 ORTHO05D004471 4.4e-16 89.4 132 34.1
Cre14.g624350 Chlamydomonas reinhardtii HOM05D003793 ORTHO05D004471 3.5e-13 79.7 209 27.3
Medtr4g036005 Medicago truncatula HOM05D003793 ORTHO05D004471 5.9e-13 79.0 101 45.5
MCO13G309 Micromonas commoda HOM05D003793 ORTHO05D004471 5.9e-13 79.0 135 36.3
LjContig00408g0002790 Lotus japonicus HOM05D003793 ORTHO05D004471 8.6e-12 75.1 89 44.9
MCO15G681 Micromonas commoda HOM05D003793 ORTHO05D004471 7.2e-11 72.0 101 40.6
PRCOL_00002005 Prasinoderma coloniale HOM05D003793 ORTHO05D004471 4.7e-10 69.3 136 30.1
arahy.Tifrunner.gnm1.ann1.DIJP1R Arachis hypogaea HOM05D003793 ORTHO05D004471 1.8e-09 67.4 99 40.4
Cc00_g27150 Coffea canephora HOM05D003793 ORTHO05D004471 7.0e-06 55.5 35 88.6


User provided reference genes

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