Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g18550 Coffea canephora HOM05D005510 ORTHO05D006750 4.9e-260 900.6 452 100.0
Dinv14542 Davidia involucrata HOM05D005510 ORTHO05D006750 3.6e-186 655.2 415 78.3
CSS0010239 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 1.5e-184 649.8 395 79.2
Rhsim13G0197800 Rhododendron simsii HOM05D005510 ORTHO05D006750 4.6e-181 638.3 413 75.8
Sopen10g030080 Solanum pennellii HOM05D005510 ORTHO05D006750 3.9e-180 635.2 442 70.4
Actinidia38200 Actinidia chinensis HOM05D005510 ORTHO05D006750 1.5e-179 633.3 393 77.9
PGSC0003DMG400008133 Solanum tuberosum HOM05D005510 ORTHO05D006750 3.3e-179 632.1 442 70.4
Oeu008195.1 Olea europaea HOM05D005510 ORTHO05D006750 4.7e-178 628.2 419 73.3
Psat1g087480 Pisum sativum HOM05D005510 ORTHO05D006750 1.1e-177 627.1 415 73.5
Solyc10g079440.2 Solanum lycopersicum HOM05D005510 ORTHO05D006750 1.2e-176 623.6 422 71.8
Ciclev10011846m.g Citrus clementina HOM05D005510 ORTHO05D006750 5.8e-176 621.3 413 73.6
Medtr6g026730 Medicago truncatula HOM05D005510 ORTHO05D006750 1.7e-175 619.8 391 74.7
Glyma.05G079900 Glycine max HOM05D005510 ORTHO05D006750 3.8e-175 618.6 414 72.2
SalBow6G2337 Salvia bowleyana HOM05D005510 ORTHO05D006750 6.4e-175 617.8 396 73.7
GSVIVG01025858001 Vitis vinifera HOM05D005510 ORTHO05D006750 1.1e-174 617.1 413 73.6
Prupe.7G023400 Prunus persica HOM05D005510 ORTHO05D006750 2.4e-174 615.9 419 72.8
QL07p015480 Quercus lobata HOM05D005510 ORTHO05D006750 2.4e-174 615.9 418 72.5
SalBow6G2820 Salvia bowleyana HOM05D005510 ORTHO05D006750 2.4e-174 615.9 396 73.5
Hma1.2p1_1327F.1_g275890 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 9.2e-174 614.0 407 72.7
Lj1C1070G2 Lonicera japonica HOM05D005510 ORTHO05D006750 7.8e-173 610.9 425 71.8
Ca_04447_v3 Cicer arietinum L. HOM05D002043 ORTHO05D002207 1.0e-172 610.5 395 73.4
MD14G1100100 Malus domestica HOM05D005510 ORTHO05D006750 2.3e-172 609.4 411 73.2
Peaxi162Scf00002g00419 Petunia axillaris HOM05D005510 ORTHO05D006750 5.1e-172 608.2 413 71.2
Phvul.004G053400 Phaseolus vulgaris HOM05D005510 ORTHO05D006750 5.1e-172 608.2 413 70.9
Cfa019896 Carpinus fangiana HOM05D005510 ORTHO05D006750 8.7e-172 607.4 394 73.4
SGA_v2.0_scaffold69G23139 Striga asiatica HOM05D005510 ORTHO05D006750 1.9e-171 606.3 396 75.0
Lj5g0015267 Lotus japonicus HOM05D005510 ORTHO05D006750 5.6e-171 604.7 411 72.0
Atru.chr8.924 Acer truncatum HOM05D005510 ORTHO05D006750 7.3e-171 604.4 394 73.4
Migut.J01685 Erythranthe guttata HOM05D005510 ORTHO05D006750 9.6e-171 604.0 408 73.3
Potri.006G026100 Populus trichocarpa HOM05D005510 ORTHO05D006750 1.2e-170 603.6 431 68.9
RcHm_v2.0_Chr3g0495031 Rosa chinensis HOM05D005510 ORTHO05D006750 4.7e-170 601.7 408 72.3
Lalb_Chr02g0157631 Lupinus albus HOM05D005510 ORTHO05D006750 2.0e-168 596.3 447 66.4
Nn7g37230 Nelumbo nucifera HOM05D005510 ORTHO05D006750 3.4e-168 595.5 414 71.5
Manes.10G072300 Manihot esculenta HOM05D005510 ORTHO05D006750 5.8e-168 594.7 420 71.2
FvH4_1g29380 Fragaria vesca HOM05D005510 ORTHO05D006750 7.6e-168 594.3 397 72.3
DCAR_020612 Daucus carota HOM05D005510 ORTHO05D006750 9.9e-168 594.0 436 67.0
FAN26G2114 Fragaria x ananassa HOM05D005510 ORTHO05D006750 3.8e-167 592.0 397 72.0
MBI13_g44207_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 3.8e-167 592.0 399 71.2
Aqoxy3G03066 Aquilegia oxysepala HOM05D005510 ORTHO05D006750 1.9e-166 589.7 429 68.5
PSO384G1661 Papaver somniferum HOM05D005510 ORTHO05D006750 1.9e-166 589.7 409 72.6
arahy.Tifrunner.gnm1.ann1.RHHN50 Arachis hypogaea HOM05D005510 ORTHO05D006750 4.2e-166 588.6 455 66.2
arahy.Tifrunner.gnm1.ann1.VC24PE Arachis hypogaea HOM05D005510 ORTHO05D006750 9.3e-166 587.4 487 63.7
PSO339G1815 Papaver somniferum HOM05D005510 ORTHO05D006750 2.1e-165 586.3 409 71.6
Cpa.g.sc33.180 Carica papaya HOM05D005510 ORTHO05D006750 7.8e-165 584.3 413 70.0
Duzib093G0795 Durio zibethinus HOM05D005510 ORTHO05D006750 1.3e-164 583.6 398 71.1
ATR1096G068 Amborella trichopoda HOM05D005510 ORTHO05D006750 1.7e-164 583.2 403 69.0
HanXRQChr02g0047171 Helianthus annuus HOM05D005510 ORTHO05D006750 5.1e-164 581.6 391 71.9
Gorai.002G222700 Gossypium raimondii HOM05D005510 ORTHO05D006750 6.6e-164 581.3 398 70.6
Gohir.D01G179900 Gossypium hirsutum HOM05D005510 ORTHO05D006750 1.5e-163 580.1 398 70.4
CsaV3_4G029010 Cucumis sativus L. HOM05D005510 ORTHO05D006750 1.9e-163 579.7 390 72.3
MELO3C019166.2 Cucumis melo HOM05D005510 ORTHO05D006750 2.5e-163 579.3 398 71.6
Lsat_1_v5_gn_5_40140 Lactuca sativa HOM05D005510 ORTHO05D006750 5.6e-163 578.2 414 67.9
Eucgr.A02173 Eucalyptus grandis HOM05D005510 ORTHO05D006750 1.3e-162 577.0 393 71.8
Gohir.A01G189700 Gossypium hirsutum HOM05D005510 ORTHO05D006750 1.3e-162 577.0 398 70.4
Nitab4.5_0000646g0280 Nicotiana tabacum HOM05D005510 ORTHO05D006750 3.6e-162 575.5 413 69.7
PGR042G2248 Punica granatum HOM05D005510 ORTHO05D006750 6.2e-162 574.7 439 66.3
TWI74G1137 Tripterygium wilfordii HOM05D005510 ORTHO05D006750 1.4e-161 573.5 391 70.3
Sabra06G0019200 Salix brachista HOM05D005510 ORTHO05D006750 4.0e-161 572.0 459 63.0
CANSAT11G0391 Cannabis sativa HOM05D005510 ORTHO05D006750 2.9e-159 565.8 391 69.6
TAR623G1399 Trochodendron aralioides HOM05D005510 ORTHO05D006750 1.1e-158 563.9 434 66.4
COL.COLO4_37568 Corchorus olitorius HOM05D005510 ORTHO05D006750 1.4e-158 563.5 437 65.9
Hund24472 Selenicereus undatus HOM05D005510 ORTHO05D006750 7.1e-158 561.2 430 64.0
HPP92_018208 Vanilla planifolia HOM05D005510 ORTHO05D006750 2.7e-157 559.3 392 69.1
CDE08G0225 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 6.0e-157 558.1 399 67.2
EL10Ac3g07380 Beta vulgaris HOM05D005510 ORTHO05D006750 3.9e-156 555.4 424 64.6
AUR62020963 Chenopodium quinoa HOM05D005510 ORTHO05D006750 8.7e-156 554.3 436 64.2
Aa31LG10G11690 Aethionema arabicum HOM05D005510 ORTHO05D006750 1.6e-154 550.1 396 68.7
Carub.0005s2357 Capsella rubella HOM05D005510 ORTHO05D006750 3.7e-154 548.9 396 67.7
EL10Ac3g07382 Beta vulgaris HOM05D005510 ORTHO05D006750 2.4e-153 546.2 468 59.4
BcaC07g40115 Brassica carinata HOM05D005510 ORTHO05D006750 9.0e-153 544.3 396 67.2
AL5G38220 Arabidopsis lyrata HOM05D005510 ORTHO05D006750 1.2e-152 543.9 417 65.0
THA.LOC104803249 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 1.5e-152 543.5 419 65.2
Haze_20353 Corylus avellana HOM05D005510 ORTHO05D006750 3.4e-152 542.3 373 70.5
VMungo0464G0325 Vigna mungo HOM05D005510 ORTHO05D006750 4.5e-152 542.0 473 59.4
AT3G56840 Arabidopsis thaliana HOM05D005510 ORTHO05D006750 7.6e-152 541.2 417 64.5
Thhalv10005964m.g Eutrema salsugineum HOM05D005510 ORTHO05D006750 7.6e-152 541.2 415 65.1
BolC8t50825H Brassica oleracea HOM05D005510 ORTHO05D006750 8.4e-151 537.7 396 66.4
Sp5g05750 Schrenkiella parvula HOM05D005510 ORTHO05D006750 1.4e-150 537.0 396 66.4
A09p49660 Brassica napus HOM05D005510 ORTHO05D006750 1.9e-150 536.6 395 67.1
BraA09t40419Z Brassica rapa HOM05D005510 ORTHO05D006750 1.9e-150 536.6 395 67.1
Sc13g0000690 Simmondsia chinensis HOM05D005510 ORTHO05D006750 7.1e-150 534.6 370 71.6
arahy.Tifrunner.gnm1.ann1.T4STFC Arachis hypogaea HOM05D005510 ORTHO05D006750 9.3e-150 534.3 420 65.5
unitig_749.g14152 Utricularia gibba HOM05D005510 ORTHO05D006750 1.6e-149 533.5 412 64.8
CSS0036939 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 2.1e-149 533.1 329 76.9
Os01g0809900 Oryza sativa ssp. japonica HOM05D005510 ORTHO05D006750 5.1e-148 528.5 394 65.7
CAN.G641.38 Capsicum annuum HOM05D005510 ORTHO05D006750 2.0e-144 516.5 330 74.2
BcaC07g39994 Brassica carinata HOM05D005510 ORTHO05D006750 3.9e-140 502.3 396 63.1
ClCG04G005050 Citrullus lanatus HOM05D005510 ORTHO05D006750 1.6e-133 480.3 360 68.1
ECA246G1668 Erigeron canadensis HOM05D005510 ORTHO05D006750 7.4e-131 471.5 394 61.7
Hma1.2p1_1327F.1_g275900 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 1.1e-129 467.6 318 71.7
Nitab4.5_0002805g0080 Nicotiana tabacum HOM05D005510 ORTHO05D006750 6.9e-129 464.9 324 71.0
AUR62018456 Chenopodium quinoa HOM05D005510 ORTHO05D006750 2.0e-128 463.4 328 66.2
Thecc.05G124100 Theobroma cacao HOM05D005510 ORTHO05D006750 6.1e-125 451.8 332 68.1
Pp3c12_4730 Physcomitrium patens HOM05D005510 ORTHO05D006750 2.0e-123 446.8 394 56.6
Sed0017548 Sechium edule HOM05D005510 ORTHO05D006750 3.3e-123 446.0 304 71.1
CiPaw.09G161300 Carya illinoinensis HOM05D005510 ORTHO05D006750 3.0e-116 422.9 278 71.6
AagrBONN_evm.TU.Sc2ySwM_344.4799 Anthoceros agrestis HOM05D005510 ORTHO05D000746 3.7e-114 416.0 391 53.7
C08p32070 Brassica napus HOM05D005510 ORTHO05D006750 3.6e-109 399.4 306 65.7
MBI13_g43864_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 2.3e-108 396.7 321 62.0
Mapoly0011s0121 Marchantia polymorpha HOM05D005510 ORTHO05D006750 3.7e-106 389.4 373 53.1
Zm00001eb150290 Zea mays HOM05D005510 ORTHO05D006750 3.1e-105 386.3 289 64.7
SMO116G0325 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 3.5e-104 382.9 411 50.4
arahy.Tifrunner.gnm1.ann1.MR8QPJ Arachis hypogaea HOM05D005510 ORTHO05D006750 5.0e-103 379.0 412 51.9
A09p49680 Brassica napus HOM05D005510 ORTHO05D006750 9.4e-102 374.8 290 62.8
BraA09t40424Z Brassica rapa HOM05D005510 ORTHO05D006750 1.6e-101 374.0 287 63.4
CSS0041188 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 1.7e-98 364.0 240 73.3
TPR.G23234 Trifolium pratense HOM05D005510 ORTHO05D006750 1.5e-91 340.9 213 73.7
Cre13.g574150 Chlamydomonas reinhardtii HOM05D005510 ORTHO05D006750 3.8e-87 326.2 473 42.7
THA.LOC104803303 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 5.2e-84 315.8 239 63.6
CARHR166990 Cardamine hirsuta HOM05D005510 ORTHO05D006750 8.3e-82 308.5 237 62.9
CAN.G248.49 Capsicum annuum HOM05D005510 ORTHO05D006750 1.4e-81 307.8 350 49.7
THA.LOC104803301 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 1.9e-70 270.8 188 67.0
MSTRG.19825 Avicennia marina HOM05D005510 ORTHO05D006750 1.2e-67 261.5 178 71.3
TPR.G942 Trifolium pratense HOM05D005510 ORTHO05D006750 8.1e-61 238.8 149 77.9
PGSC0003DMG400012053 Solanum tuberosum HOM05D005510 ORTHO05D006750 2.3e-55 220.7 146 71.9
Manes.07G109500 Manihot esculenta HOM05D005510 ORTHO05D006750 3.9e-55 219.9 158 69.6
Cfa027308 Carpinus fangiana HOM05D005510 ORTHO05D006750 2.8e-53 213.8 406 35.2
Zm00001eb093570 Zea mays HOM05D005510 ORTHO05D006750 6.9e-52 209.1 249 47.0
Manes.05G099066 Manihot esculenta HOM05D005510 ORTHO05D006750 2.6e-51 207.2 193 60.6
SEGI_04748 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 2.4e-49 200.7 175 61.1
CBR_g4412 Chara braunii HOM05D005510 ORTHO05D006750 9.3e-41 172.2 447 30.4
SalBow7G3561 Salvia bowleyana HOM05D005510 ORTHO05D006750 1.8e-39 167.9 122 67.2
AagrBONN_evm.TU.Sc2ySwM_344.567 Anthoceros agrestis HOM05D005510 ORTHO05D006750 8.7e-39 165.6 435 31.0
SMO356G0394 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 1.8e-36 157.9 416 30.5
Pp3c25_9310 Physcomitrium patens HOM05D005510 ORTHO05D006750 6.4e-34 149.4 442 30.1
Mapoly0085s0100 Marchantia polymorpha HOM05D005510 ORTHO05D006750 1.1e-33 148.7 435 28.5
CAN.G636.4 Capsicum annuum HOM05D005510 ORTHO05D006750 3.3e-30 137.1 235 39.1
CAN.G524.4 Capsicum annuum HOM05D005510 ORTHO05D006750 1.3e-29 135.2 104 61.5
Zm00001eb341880 Zea mays HOM05D005510 ORTHO05D006750 3.1e-28 130.6 113 56.6
SEGI_32136 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 2.7e-24 117.5 77 71.4
PRCOL_00000521 Prasinoderma coloniale HOM05D005510 ORTHO05D006750 3.0e-23 114.0 273 31.9
MD14G1091800 Malus domestica HOM05D005510 ORTHO05D006750 5.1e-23 113.2 73 69.9
MD14G1091600 Malus domestica HOM05D005510 ORTHO05D006750 1.4e-20 105.1 84 69.0
AUR62018455 Chenopodium quinoa HOM05D005510 ORTHO05D006750 3.1e-20 104.0 120 59.2
CAN.G641.39 Capsicum annuum HOM05D005510 ORTHO05D006750 2.0e-19 101.3 66 74.2
CAN.G524.9 Capsicum annuum HOM05D005510 ORTHO05D020273 2.0e-14 84.7 53 69.8
CDE09G0372 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 1.3e-13 82.0 64 65.6
MD14G1091700 Malus domestica HOM05D005510 ORTHO05D006750 4.7e-08 63.5 37 81.1


User provided reference genes

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