Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g18330 Coffea canephora HOM05D003253 ORTHO05D002078 1.3e-111 406.4 201 100.0
Cc03_g03900 Coffea canephora HOM05D003253 ORTHO05D002078 1.8e-76 289.7 160 90.0
Nitab4.5_0001920g0020 Nicotiana tabacum HOM05D003253 ORTHO05D002078 1.2e-53 213.8 141 70.9
Peaxi162Scf00192g00112 Petunia axillaris HOM05D003253 ORTHO05D002078 1.6e-53 213.4 146 69.9
Peaxi162Scf00092g00617 Petunia axillaris HOM05D003253 ORTHO05D002078 2.8e-53 212.6 142 70.4
Nitab4.5_0001342g0020 Nicotiana tabacum HOM05D003253 ORTHO05D002078 4.7e-53 211.8 141 70.2
Oeu049061.1 Olea europaea HOM05D003253 ORTHO05D002078 1.2e-51 207.2 146 67.1
PGSC0003DMG400032262 Solanum tuberosum HOM05D003253 ORTHO05D002078 4.4e-51 205.3 154 66.2
Solyc09g082140.4 Solanum lycopersicum HOM05D003253 ORTHO05D002078 9.8e-51 204.1 145 66.2
Sopen09g031020 Solanum pennellii HOM05D003253 ORTHO05D002078 1.7e-50 203.4 145 66.2
Dinv44542 Davidia involucrata HOM05D003253 ORTHO05D002078 1.4e-49 200.3 147 63.9
RhsimUnG0259000 Rhododendron simsii HOM05D003253 ORTHO05D002078 1.9e-49 199.9 147 65.3
Nitab4.5_0000321g0110 Nicotiana tabacum HOM05D003253 ORTHO05D002078 1.2e-48 197.2 146 63.7
CSS0030672 Camellia sinensis var. sinensis HOM05D003253 ORTHO05D002078 2.7e-48 196.1 148 66.2
CSS0040917 Camellia sinensis var. sinensis HOM05D003253 ORTHO05D002078 2.7e-48 196.1 148 66.2
COL.COLO4_21490 Corchorus olitorius HOM05D003253 ORTHO05D002078 6.0e-48 194.9 149 65.1
Actinidia25640 Actinidia chinensis HOM05D003253 ORTHO05D002078 1.0e-47 194.1 152 61.8
Actinidia35276 Actinidia chinensis HOM05D003253 ORTHO05D002078 1.0e-47 194.1 152 61.8
Nitab4.5_0008118g0010 Nicotiana tabacum HOM05D003253 ORTHO05D002078 1.0e-47 194.1 146 63.7
Potri.010G086600 Populus trichocarpa HOM05D003253 ORTHO05D002078 1.0e-47 194.1 153 62.1
MSTRG.24737 Avicennia marina HOM05D003253 ORTHO05D002078 2.3e-47 193.0 146 65.8
Manes.03G177500 Manihot esculenta HOM05D003253 ORTHO05D002078 6.6e-47 191.4 148 62.2
Cpa.g.sc1512.1 Carica papaya HOM05D003253 ORTHO05D002078 8.6e-47 191.0 179 54.7
Gorai.006G069200 Gossypium raimondii HOM05D003253 ORTHO05D002078 1.1e-46 190.7 146 62.3
Duzib052G0544 Durio zibethinus HOM05D003253 ORTHO05D002078 1.5e-46 190.3 147 61.2
Gohir.D09G055900 Gossypium hirsutum HOM05D003253 ORTHO05D002078 1.9e-46 189.9 146 62.3
Gohir.A09G056601 Gossypium hirsutum HOM05D003253 ORTHO05D002078 2.5e-46 189.5 146 61.6
PGSC0003DMG400030174 Solanum tuberosum HOM05D003253 ORTHO05D002078 3.3e-46 189.1 141 63.8
TAR633G1510 Trochodendron aralioides HOM05D003253 ORTHO05D002078 3.3e-46 189.1 146 62.3
Actinidia25641 Actinidia chinensis HOM05D003253 ORTHO05D002078 4.3e-46 188.7 142 62.0
Actinidia35275 Actinidia chinensis HOM05D003253 ORTHO05D002078 4.3e-46 188.7 142 62.0
CAN.G1094.7 Capsicum annuum HOM05D003253 ORTHO05D002078 4.3e-46 188.7 132 67.4
Sabra10G0056900 Salix brachista HOM05D003253 ORTHO05D002078 4.3e-46 188.7 153 60.8
Lj6C607G12 Lonicera japonica HOM05D003253 ORTHO05D002078 9.5e-46 187.6 143 64.3
Thecc.04G233500 Theobroma cacao HOM05D003253 ORTHO05D002078 2.8e-45 186.0 147 61.2
PGSC0003DMG400023100 Solanum tuberosum HOM05D003253 ORTHO05D002078 6.2e-45 184.9 141 61.7
QL06p002114 Quercus lobata HOM05D003253 ORTHO05D002078 8.0e-45 184.5 148 61.5
CiPaw.01G167300 Carya illinoinensis HOM05D003253 ORTHO05D002078 1.8e-44 183.3 148 59.5
TWI09G0550 Tripterygium wilfordii HOM05D003253 ORTHO05D002078 1.8e-44 183.3 135 65.2
MBI12_g36454_MAGBIO Magnolia biondii HOM05D003253 ORTHO05D002078 2.3e-44 183.0 150 56.0
Sopen09g023100 Solanum pennellii HOM05D003253 ORTHO05D002078 2.3e-44 183.0 141 62.4
DCAR_002383 Daucus carota HOM05D003253 ORTHO05D002078 3.1e-44 182.6 134 63.4
MD13G1194400 Malus domestica HOM05D003253 ORTHO05D002078 3.1e-44 182.6 149 61.1
PGR004G0591 Punica granatum HOM05D003253 ORTHO05D002078 3.1e-44 182.6 164 56.1
PGR004G0723 Punica granatum HOM05D003253 ORTHO05D002078 3.1e-44 182.6 182 52.7
Haze_00887 Corylus avellana HOM05D003253 ORTHO05D002078 5.2e-44 181.8 148 61.5
ClCG05G005130 Citrullus lanatus HOM05D003253 ORTHO05D002078 8.9e-44 181.0 149 59.1
PGR004G2032 Punica granatum HOM05D003253 ORTHO05D002078 1.2e-43 180.6 164 57.3
Sopen06g019350 Solanum pennellii HOM05D003253 ORTHO05D002078 1.2e-43 180.6 157 60.5
PGSC0003DMG400041970 Solanum tuberosum HOM05D003253 ORTHO05D002078 2.0e-43 179.9 141 63.8
vmacro09557 Vaccinium macrocarpon HOM05D003253 ORTHO05D002078 2.0e-43 179.9 148 60.8
Cfa015661 Carpinus fangiana HOM05D003253 ORTHO05D002078 2.6e-43 179.5 148 60.8
Solyc06g054230.4 Solanum lycopersicum HOM05D003253 ORTHO05D002078 2.6e-43 179.5 157 59.9
Hund12120 Selenicereus undatus HOM05D003253 ORTHO05D002078 5.8e-43 178.3 152 57.9
Hma1.2p1_0602F.1_g187400 Hydrangea macrophylla HOM05D003253 ORTHO05D002078 9.8e-43 177.6 147 58.5
GSVIVG01017993001 Vitis vinifera HOM05D003253 ORTHO05D002078 1.3e-42 177.2 145 60.7
Nn1g02344 Nelumbo nucifera HOM05D003253 ORTHO05D002078 2.2e-42 176.4 147 57.8
RcHm_v2.0_Chr4g0416001 Rosa chinensis HOM05D003253 ORTHO05D002078 2.2e-42 176.4 148 59.5
CANSAT78G2304 Cannabis sativa HOM05D003253 ORTHO05D002078 2.9e-42 176.0 149 58.4
CiPaw.02G097800 Carya illinoinensis HOM05D003253 ORTHO05D002078 2.9e-42 176.0 196 49.0
Sed0023955 Sechium edule HOM05D003253 ORTHO05D002078 2.9e-42 176.0 149 58.4
TWI53G2057 Tripterygium wilfordii HOM05D003253 ORTHO05D002078 3.7e-42 175.6 148 58.1
PGSC0003DMG400006740 Solanum tuberosum HOM05D003253 ORTHO05D002078 6.4e-42 174.9 142 59.9
CsaV3_3G013260 Cucumis sativus L. HOM05D003253 ORTHO05D002078 8.3e-42 174.5 149 57.0
SalBow3G1993 Salvia bowleyana HOM05D003253 ORTHO05D002078 8.3e-42 174.5 133 63.9
AUR62025569 Chenopodium quinoa HOM05D003253 ORTHO05D002078 1.1e-41 174.1 146 56.2
AUR62008677 Chenopodium quinoa HOM05D003253 ORTHO05D002078 1.4e-41 173.7 146 56.8
FAN12G2226 Fragaria x ananassa HOM05D003253 ORTHO05D002078 1.9e-41 173.3 144 60.4
arahy.Tifrunner.gnm1.ann1.2A778E Arachis hypogaea HOM05D003253 ORTHO05D002078 3.2e-41 172.6 144 61.1
FvH4_4g16310 Fragaria vesca HOM05D003253 ORTHO05D002078 4.1e-41 172.2 144 60.4
FAN22G0721 Fragaria x ananassa HOM05D003253 ORTHO05D002078 4.1e-41 172.2 148 58.8
Prupe.1G015300 Prunus persica HOM05D003253 ORTHO05D002078 5.4e-41 171.8 144 59.7
CAN.G231.2 Capsicum annuum HOM05D003253 ORTHO05D002078 7.0e-41 171.4 149 56.4
Sc19g0004070 Simmondsia chinensis HOM05D003253 ORTHO05D002078 9.2e-41 171.0 147 56.5
FAN07G1764 Fragaria x ananassa HOM05D003253 ORTHO05D002078 1.6e-40 170.2 148 58.1
CARHR004920 Cardamine hirsuta HOM05D003253 ORTHO05D002078 2.1e-40 169.9 135 57.8
Migut.N00190 Erythranthe guttata HOM05D003253 ORTHO05D002078 2.1e-40 169.9 138 62.3
BcaB02g06862 Brassica carinata HOM05D003253 ORTHO05D002078 3.5e-40 169.1 148 53.4
Glyma.11G006000 Glycine max HOM05D003253 ORTHO05D002078 3.5e-40 169.1 151 57.6
vmacro09558 Vaccinium macrocarpon HOM05D003253 ORTHO05D002078 4.6e-40 168.7 142 58.5
arahy.Tifrunner.gnm1.ann1.ETQ115 Arachis hypogaea HOM05D003253 ORTHO05D002078 6.0e-40 168.3 144 59.7
A10p04120 Brassica napus HOM05D003253 ORTHO05D002078 6.0e-40 168.3 142 55.6
Glyma.01G237400 Glycine max HOM05D003253 ORTHO05D002078 6.0e-40 168.3 151 57.0
THA.LOC104800959 Tarenaya hassleriana HOM05D003253 ORTHO05D002078 6.0e-40 168.3 177 48.6
Ciclev10004835m.g Citrus clementina HOM05D003253 ORTHO05D002078 1.0e-39 167.5 148 54.1
Glyma.18G119500 Glycine max HOM05D003253 ORTHO05D002078 1.7e-39 166.8 151 55.6
Sopen09g024540 Solanum pennellii HOM05D003253 ORTHO05D002078 1.7e-39 166.8 142 58.5
Thhalv10007544m.g Eutrema salsugineum HOM05D003253 ORTHO05D002078 2.3e-39 166.4 150 50.7
Sed0019594 Sechium edule HOM05D003253 ORTHO05D002078 3.0e-39 166.0 169 51.5
Aa31LG1G19210 Aethionema arabicum HOM05D003253 ORTHO05D002078 3.9e-39 165.6 155 52.9
Aqoxy2G03403 Aquilegia oxysepala HOM05D003253 ORTHO05D002078 3.9e-39 165.6 134 59.0
AL1G15260 Arabidopsis lyrata HOM05D003253 ORTHO05D002078 3.9e-39 165.6 150 52.7
Sp1g04290 Schrenkiella parvula HOM05D003253 ORTHO05D002078 3.9e-39 165.6 137 54.0
Eucgr.H03453 Eucalyptus grandis HOM05D003253 ORTHO05D002078 6.6e-39 164.9 146 55.5
Lalb_Chr09g0319891 Lupinus albus HOM05D003253 ORTHO05D002078 6.6e-39 164.9 144 58.3
Sopen06g019340 Solanum pennellii HOM05D003253 ORTHO05D002078 8.6e-39 164.5 142 57.0
Aqoxy5G00455 Aquilegia oxysepala HOM05D003253 ORTHO05D002078 1.5e-38 163.7 147 55.1
PSO210G5071 Papaver somniferum HOM05D003253 ORTHO05D002078 1.5e-38 163.7 137 56.2
Solyc06g054200.3 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.5e-38 163.7 142 57.0
Solyc09g059910.3 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.5e-38 163.7 134 58.2
Solyc06g054160.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.9e-38 163.3 142 56.3
C05p03760 Brassica napus HOM05D003253 ORTHO05D002078 5.6e-38 161.8 149 53.7
BolC5t29153H Brassica oleracea HOM05D003253 ORTHO05D002078 5.6e-38 161.8 149 53.7
Psat0s3046g0120 Pisum sativum HOM05D003253 ORTHO05D002078 5.6e-38 161.8 140 60.0
Psat6g188240 Pisum sativum HOM05D003253 ORTHO05D002078 5.6e-38 161.8 136 60.3
Psat6g206800 Pisum sativum HOM05D003253 ORTHO05D002078 1.6e-37 160.2 140 59.3
Solyc06g054180.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 2.1e-37 159.8 142 55.6
AT1G05410 Arabidopsis thaliana HOM05D003253 ORTHO05D002078 3.6e-37 159.1 150 50.0
SGA_v2.0_scaffold522G52706 Striga asiatica HOM05D003253 ORTHO05D002078 3.6e-37 159.1 133 57.1
MELO3C006528.2 Cucumis melo HOM05D003253 ORTHO05D002078 4.7e-37 158.7 149 54.4
PSO761G0482 Papaver somniferum HOM05D003253 ORTHO05D002078 4.7e-37 158.7 137 54.7
Phvul.002G045300 Phaseolus vulgaris HOM05D003253 ORTHO05D002078 6.2e-37 158.3 151 55.6
Lalb_Chr25g0279741 Lupinus albus HOM05D003253 ORTHO05D002078 1.1e-36 157.5 129 57.4
PGR004G2151 Punica granatum HOM05D003253 ORTHO05D002078 1.1e-36 157.5 118 62.7
Sopen09g024360 Solanum pennellii HOM05D003253 ORTHO05D002078 1.1e-36 157.5 135 60.0
TPR.G5553 Trifolium pratense HOM05D003253 ORTHO05D002078 1.1e-36 157.5 132 58.3
Solyc09g061260.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.4e-36 157.1 112 65.2
Ca_24401_v3 Cicer arietinum L. HOM05D003253 ORTHO05D002078 1.8e-36 156.8 147 56.5
Carub.0001s0475 Capsella rubella HOM05D003253 ORTHO05D002078 2.3e-36 156.4 150 51.3
DCAR_027222 Daucus carota HOM05D003253 ORTHO05D002078 3.1e-36 156.0 147 53.1
Medtr1g103600 Medicago truncatula HOM05D003253 ORTHO05D002078 5.2e-36 155.2 147 53.7
Lsat_1_v5_gn_7_64380 Lactuca sativa HOM05D003253 ORTHO05D002078 6.8e-36 154.8 151 51.7
BcaC05g24390 Brassica carinata HOM05D003253 ORTHO05D002078 8.9e-36 154.5 113 61.1
ECA240G1510 Erigeron canadensis HOM05D003253 ORTHO05D002078 8.9e-36 154.5 134 54.5
VMungo1215G2555 Vigna mungo HOM05D003253 ORTHO05D002078 8.9e-36 154.5 135 57.0
BcaC05g24391 Brassica carinata HOM05D003253 ORTHO05D002078 2.0e-35 153.3 141 53.9
BraA10t42682Z Brassica rapa HOM05D003253 ORTHO05D002078 2.0e-35 153.3 142 52.1
Medtr5g006390 Medicago truncatula HOM05D003253 ORTHO05D002078 2.6e-35 152.9 148 52.0
LjContig00408g0013219 Lotus japonicus HOM05D003253 ORTHO05D002078 3.4e-35 152.5 148 54.1
Solyc09g059740.3 Solanum lycopersicum HOM05D003253 ORTHO05D002078 5.8e-35 151.8 122 60.7
Solyc09g061370.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 5.8e-35 151.8 142 54.2
Lj5g0003807 Lotus japonicus HOM05D003253 ORTHO05D002078 7.5e-35 151.4 135 54.1
CARHR054160 Cardamine hirsuta HOM05D003253 ORTHO05D002078 1.7e-34 150.2 136 52.2
HanXRQChr09g0248261 Helianthus annuus HOM05D003253 ORTHO05D002078 4.9e-34 148.7 135 54.8
Ca_10889_v3 Cicer arietinum L. HOM05D003253 ORTHO05D002078 1.4e-33 147.1 147 52.4
Ca_30336_v3 Cicer arietinum L. HOM05D003253 ORTHO05D002078 1.4e-33 147.1 147 52.4
Lalb_Chr05g0211011 Lupinus albus HOM05D003253 ORTHO05D002078 1.9e-33 146.7 151 50.3
PSO832G3307 Papaver somniferum HOM05D003253 ORTHO05D002078 1.9e-33 146.7 149 51.0
Psat4g210160 Pisum sativum HOM05D003253 ORTHO05D002078 2.4e-33 146.4 139 54.7
Eucgr.H03454 Eucalyptus grandis HOM05D003253 ORTHO05D002078 5.4e-33 145.2 145 53.8
PSO210G1140 Papaver somniferum HOM05D003253 ORTHO05D002078 5.4e-33 145.2 149 50.3
PGSC0003DMG400016262 Solanum tuberosum HOM05D003253 ORTHO05D002078 5.4e-33 145.2 120 60.0
Zm00001eb057100 Zea mays HOM05D003253 ORTHO05D002078 2.3e-31 139.8 135 49.6
Os03g0747200 Oryza sativa ssp. japonica HOM05D003253 ORTHO05D002078 8.6e-31 137.9 135 50.4
Dinv14001 Davidia involucrata HOM05D003253 ORTHO05D002078 1.5e-30 137.1 91 68.1
Phvul.002G044800 Phaseolus vulgaris HOM05D003253 ORTHO05D002078 1.9e-30 136.7 136 47.1
TPR.G37995 Trifolium pratense HOM05D003253 ORTHO05D002078 7.3e-30 134.8 145 51.0
ATR0697G249 Amborella trichopoda HOM05D003253 ORTHO05D002078 2.4e-28 129.8 154 46.8
DCAR_030641 Daucus carota HOM05D003253 ORTHO05D002078 1.7e-23 113.6 148 43.9
SEGI_30321 Sequoiadendron giganteum HOM05D003253 ORTHO05D002078 8.7e-23 111.3 132 47.7
Solyc09g061580.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 9.6e-22 107.8 100 54.0
PGSC0003DMG400030176 Solanum tuberosum HOM05D003253 ORTHO05D002078 1.2e-21 107.5 141 45.4
Solyc09g061500.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 4.7e-21 105.5 125 45.6
Solyc09g061590.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 4.7e-21 105.5 110 50.0
Solyc09g059890.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.2e-19 100.9 90 53.3
SEGI_19972 Sequoiadendron giganteum HOM05D003253 ORTHO05D002078 1.5e-19 100.5 108 50.0
BcaB05g24280 Brassica carinata HOM05D003253 ORTHO05D002078 2.0e-19 100.1 67 62.7
TWI73G0819 Tripterygium wilfordii HOM05D003253 ORTHO05D002078 2.0e-19 100.1 145 40.7
Solyc09g061540.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 2.6e-19 99.8 100 52.0
DCAR_027225 Daucus carota HOM05D003253 ORTHO05D002078 2.9e-18 96.3 90 53.3
PGSC0003DMG400030175 Solanum tuberosum HOM05D003253 ORTHO05D002078 1.0e-15 87.8 68 61.8
Pp3c15_9060 Physcomitrium patens HOM05D003253 ORTHO05D002078 1.3e-15 87.4 136 38.2
Pp3c9_22000 Physcomitrium patens HOM05D003253 ORTHO05D002078 6.6e-15 85.1 136 37.5
Pp3c9_22005 Physcomitrium patens HOM05D003253 ORTHO05D002078 6.6e-15 85.1 136 37.5
AagrBONN_evm.TU.Sc2ySwM_344.1597 Anthoceros agrestis HOM05D003253 ORTHO05D002078 1.1e-14 84.3 125 43.2
BcaB05g24279 Brassica carinata HOM05D003253 ORTHO05D002078 5.6e-14 82.0 56 62.5
HPP92_009611 Vanilla planifolia HOM05D003253 ORTHO05D002078 1.8e-12 77.0 92 44.6
Solyc09g060020.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 9.0e-12 74.7 64 54.7
Cpa.g.sc58.96 Carica papaya HOM05D003253 ORTHO05D002078 4.5e-11 72.4 110 39.1
Solyc09g059870.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 9.3e-09 64.7 116 37.1
DCAR_027224 Daucus carota HOM05D003253 ORTHO05D002078 3.0e-07 59.7 53 58.5
Solyc09g060060.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 6.7e-07 58.5 53 60.4
DCAR_027223 Daucus carota HOM05D003253 ORTHO05D002078 1.1e-06 57.8 53 54.7
CBR_g48542 Chara braunii HOM05D003253 ORTHO05D002078 1.5e-06 57.4 133 31.6
Solyc09g061600.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 5.6e-06 55.5 53 52.8


User provided reference genes

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