Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g18220 Coffea canephora HOM05D005121 ORTHO05D006115 1.0e-176 623.2 305 100.0
Nitab4.5_0000649g0190 Nicotiana tabacum HOM05D005121 ORTHO05D006115 9.7e-159 563.5 305 87.5
CAN.G424.38 Capsicum annuum HOM05D005121 ORTHO05D006115 1.8e-157 559.3 305 87.5
Peaxi162Scf01152g00110 Petunia axillaris HOM05D005121 ORTHO05D006115 2.4e-157 558.9 305 87.2
GSVIVG01003678001 Vitis vinifera HOM05D005121 ORTHO05D006115 1.2e-156 556.6 305 88.5
Nitab4.5_0005620g0020 Nicotiana tabacum HOM05D005121 ORTHO05D006115 1.3e-155 553.1 305 86.6
Gohir.D10G019900 Gossypium hirsutum HOM05D005121 ORTHO05D006115 9.4e-154 547.0 305 85.9
Potri.004G026800 Populus trichocarpa HOM05D005121 ORTHO05D006115 9.4e-154 547.0 305 85.9
CiPaw.10G115700 Carya illinoinensis HOM05D005121 ORTHO05D006115 1.6e-153 546.2 305 85.2
Ciclev10016069m.g Citrus clementina HOM05D005121 ORTHO05D006115 2.1e-153 545.8 305 86.9
Actinidia24048 Actinidia chinensis HOM05D005121 ORTHO05D006115 2.7e-153 545.4 305 85.9
PGSC0003DMG400022347 Solanum tuberosum HOM05D005121 ORTHO05D006115 6.1e-153 544.3 305 85.6
Potri.011G040000 Populus trichocarpa HOM05D005121 ORTHO05D006115 7.9e-153 543.9 305 86.2
Lj1A1216T23 Lonicera japonica HOM05D005121 ORTHO05D006115 1.4e-152 543.1 307 85.0
Sopen02g024200 Solanum pennellii HOM05D005121 ORTHO05D006115 1.4e-152 543.1 305 85.2
Thecc.06G202500 Theobroma cacao HOM05D005121 ORTHO05D006115 1.4e-152 543.1 305 85.6
Solyc02g079400.3 Solanum lycopersicum HOM05D005121 ORTHO05D006115 2.3e-152 542.3 305 85.2
CsaV3_6G007300 Cucumis sativus L. HOM05D005121 ORTHO05D006115 1.1e-151 540.0 305 85.2
Sed0024430 Sechium edule HOM05D005121 ORTHO05D006115 2.6e-151 538.9 305 85.2
Lj6g0004146 Lotus japonicus HOM05D005121 ORTHO05D006115 4.3e-151 538.1 305 84.3
Eucgr.D00772 Eucalyptus grandis HOM05D005121 ORTHO05D006115 5.7e-151 537.7 305 85.6
MELO3C022396.2 Cucumis melo HOM05D005121 ORTHO05D006115 7.4e-151 537.3 305 84.6
Dinv18977 Davidia involucrata HOM05D005121 ORTHO05D006115 9.7e-151 537.0 305 85.2
CsaV3_7G021490 Cucumis sativus L. HOM05D005121 ORTHO05D006115 1.3e-150 536.6 305 85.2
Oeu027963.1 Olea europaea HOM05D005121 ORTHO05D006115 1.7e-150 536.2 305 84.6
MD05G1329000 Malus domestica HOM05D005121 ORTHO05D006115 2.2e-150 535.8 305 84.3
TPR.G19604 Trifolium pratense HOM05D005121 ORTHO05D006115 2.2e-150 535.8 305 85.2
Rhsim02G0118100 Rhododendron simsii HOM05D005121 ORTHO05D006115 2.8e-150 535.4 305 85.2
CANSAT56G0975 Cannabis sativa HOM05D005121 ORTHO05D006115 4.8e-150 534.6 305 85.6
TWI63G0506 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 4.8e-150 534.6 305 83.6
CSS0043949 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 6.3e-150 534.3 305 84.6
MELO3C013201.2 Cucumis melo HOM05D005121 ORTHO05D006115 6.3e-150 534.3 305 84.9
ClCG06G001360 Citrullus lanatus HOM05D005121 ORTHO05D006115 8.2e-150 533.9 305 84.3
HanXRQChr12g0359441 Helianthus annuus HOM05D005121 ORTHO05D006115 8.2e-150 533.9 305 83.3
DCAR_004161 Daucus carota HOM05D005121 ORTHO05D006115 1.1e-149 533.5 305 83.3
CSS0003935 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 1.4e-149 533.1 305 84.3
Sabra11G0027500 Salix brachista HOM05D005121 ORTHO05D006115 1.8e-149 532.7 305 84.3
arahy.Tifrunner.gnm1.ann1.XU4W4S Arachis hypogaea HOM05D005121 ORTHO05D006115 2.4e-149 532.3 305 83.3
MD10G1305900 Malus domestica HOM05D005121 ORTHO05D006115 2.4e-149 532.3 305 83.3
Duzib160G0488 Durio zibethinus HOM05D005121 ORTHO05D006115 4.1e-149 531.6 305 83.9
arahy.Tifrunner.gnm1.ann1.ANU5MI Arachis hypogaea HOM05D005121 ORTHO05D006115 5.3e-149 531.2 305 83.3
arahy.Tifrunner.gnm1.ann1.FY8LHX Arachis hypogaea HOM05D005121 ORTHO05D006115 6.9e-149 530.8 305 83.0
Lsat_1_v5_gn_5_78441 Lactuca sativa HOM05D005121 ORTHO05D006115 1.2e-148 530.0 305 83.6
Phvul.006G193700 Phaseolus vulgaris HOM05D005121 ORTHO05D006115 1.2e-148 530.0 305 84.3
ClCG09G021600 Citrullus lanatus HOM05D005121 ORTHO05D006115 1.5e-148 529.6 305 83.3
RcHm_v2.0_Chr5g0005701 Rosa chinensis HOM05D005121 ORTHO05D006115 2.0e-148 529.3 305 83.9
VMungo0540G0293 Vigna mungo HOM05D005121 ORTHO05D006115 3.4e-148 528.5 305 83.6
Ca_00225_v3 Cicer arietinum L. HOM05D005121 ORTHO05D006115 7.7e-148 527.3 305 83.6
Glyma.13G247800 Glycine max HOM05D005121 ORTHO05D006115 7.7e-148 527.3 305 83.6
QL05p080508 Quercus lobata HOM05D005121 ORTHO05D006115 7.7e-148 527.3 304 82.9
Gorai.011G021100 Gossypium raimondii HOM05D005121 ORTHO05D006115 1.0e-147 526.9 305 83.3
TAR627G0857 Trochodendron aralioides HOM05D005121 ORTHO05D006115 1.3e-147 526.6 305 83.6
PSO210G2069 Papaver somniferum HOM05D005121 ORTHO05D006115 1.7e-147 526.2 305 81.6
COL.COLO4_31636 Corchorus olitorius HOM05D005121 ORTHO05D006115 2.2e-147 525.8 305 83.3
ECA234G4718 Erigeron canadensis HOM05D005121 ORTHO05D006115 2.9e-147 525.4 305 82.3
Glyma.15G066000 Glycine max HOM05D005121 ORTHO05D006115 2.9e-147 525.4 305 83.9
Medtr2g011480 Medicago truncatula HOM05D005121 ORTHO05D006115 3.8e-147 525.0 305 83.9
PGR031G1397 Punica granatum HOM05D005121 ORTHO05D006115 5.0e-147 524.6 305 82.0
MSTRG.7276 Avicennia marina HOM05D005121 ORTHO05D006115 6.5e-147 524.2 305 82.0
Gohir.A10G019000 Gossypium hirsutum HOM05D005121 ORTHO05D006115 8.5e-147 523.9 305 82.6
SGA_v2.0_scaffold114G31993 Striga asiatica HOM05D005121 ORTHO05D006115 1.1e-146 523.5 308 82.1
Prupe.4G033800 Prunus persica HOM05D005121 ORTHO05D006115 1.9e-146 522.7 305 82.6
AUR62012514 Chenopodium quinoa HOM05D005121 ORTHO05D006115 2.5e-146 522.3 305 83.0
AUR62014685 Chenopodium quinoa HOM05D005121 ORTHO05D006115 3.2e-146 521.9 305 82.6
Duzib235G0052 Durio zibethinus HOM05D005121 ORTHO05D006115 3.2e-146 521.9 305 83.6
FvH4_3g03660 Fragaria vesca HOM05D005121 ORTHO05D006115 7.2e-146 520.8 305 82.3
FAN25G2418 Fragaria x ananassa HOM05D005121 ORTHO05D006115 7.2e-146 520.8 305 82.3
FAN21G3866 Fragaria x ananassa HOM05D005121 ORTHO05D006115 2.1e-145 519.2 305 81.6
Lalb_Chr18g0060031 Lupinus albus HOM05D005121 ORTHO05D006115 2.7e-145 518.8 305 81.6
Aqoxy7G03433 Aquilegia oxysepala HOM05D005121 ORTHO05D006115 3.6e-145 518.5 305 82.0
EL10Ac6g14131 Beta vulgaris HOM05D005121 ORTHO05D006115 3.6e-145 518.5 305 82.3
Oeu030047.2 Olea europaea HOM05D005121 ORTHO05D006115 3.6e-145 518.5 326 78.2
TWI38G0490 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 4.7e-145 518.1 305 81.0
DCAR_008096 Daucus carota HOM05D005121 ORTHO05D006115 6.1e-145 517.7 305 80.7
Psat1g209560 Pisum sativum HOM05D005121 ORTHO05D006115 7.9e-145 517.3 305 82.0
Nn1g06832 Nelumbo nucifera HOM05D005121 ORTHO05D006115 2.3e-144 515.8 305 81.3
Manes.17G032800 Manihot esculenta HOM05D005121 ORTHO05D006115 3.0e-144 515.4 301 82.7
FAN16G2329 Fragaria x ananassa HOM05D005121 ORTHO05D006115 6.7e-144 514.2 302 82.1
unitig_26.g9381 Utricularia gibba HOM05D005121 ORTHO05D006115 1.5e-143 513.1 305 80.0
Migut.M01229 Erythranthe guttata HOM05D005121 ORTHO05D006115 9.7e-143 510.4 305 81.0
Sabra04G0015300 Salix brachista HOM05D005121 ORTHO05D006115 1.3e-142 510.0 372 69.6
CARHR050750 Cardamine hirsuta HOM05D005121 ORTHO05D006115 2.8e-142 508.8 307 79.2
Cfa000313 Carpinus fangiana HOM05D005121 ORTHO05D006115 6.3e-142 507.7 300 80.3
FAN11G1262 Fragaria x ananassa HOM05D005121 ORTHO05D006115 1.1e-141 506.9 330 76.1
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 1.4e-141 506.5 303 80.2
Thhalv10023604m.g Eutrema salsugineum HOM05D005121 ORTHO05D006115 3.1e-141 505.4 307 78.8
Aa31LG2G9240 Aethionema arabicum HOM05D005121 ORTHO05D006115 4.1e-141 505.0 305 79.3
Manes.16G019177 Manihot esculenta HOM05D005121 ORTHO05D006115 5.3e-141 504.6 301 81.4
THA.LOC104809541 Tarenaya hassleriana HOM05D005121 ORTHO05D006115 5.3e-141 504.6 302 80.8
AL2G14620 Arabidopsis lyrata HOM05D005121 ORTHO05D006115 1.2e-140 503.4 307 78.5
Sp2g02960 Schrenkiella parvula HOM05D005121 ORTHO05D006115 3.5e-140 501.9 305 78.7
A01p30380 Brassica napus HOM05D005121 ORTHO05D006115 1.3e-139 500.0 306 78.1
C01p38590 Brassica napus HOM05D005121 ORTHO05D006115 1.3e-139 500.0 306 78.1
BraA01t03171Z Brassica rapa HOM05D005121 ORTHO05D006115 1.3e-139 500.0 306 78.1
Carub.0002s0357 Capsella rubella HOM05D005121 ORTHO05D006115 1.3e-139 500.0 307 78.8
Sc24g0000680 Simmondsia chinensis HOM05D005121 ORTHO05D006115 2.2e-139 499.2 307 78.8
BcaC06g31855 Brassica carinata HOM05D005121 ORTHO05D006115 2.9e-139 498.8 306 78.4
AT1G61620 Arabidopsis thaliana HOM05D005121 ORTHO05D006115 1.9e-138 496.1 307 78.2
CDE02G1411 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 2.5e-138 495.7 305 77.4
Os03g0279900 Oryza sativa ssp. japonica HOM05D005121 ORTHO05D006115 5.5e-138 494.6 303 76.6
CARHR011610 Cardamine hirsuta HOM05D005121 ORTHO05D006115 1.2e-137 493.4 304 78.6
CDE05G3522 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 1.0e-136 490.3 305 77.4
ATR1132G047 Amborella trichopoda HOM05D005121 ORTHO05D006115 5.2e-136 488.0 305 76.7
Zm00001eb012710 Zea mays HOM05D005121 ORTHO05D006115 8.5e-131 470.7 303 73.6
Haze_06613 Corylus avellana HOM05D005121 ORTHO05D006115 1.5e-130 469.9 388 62.6
Zm00001eb397450 Zea mays HOM05D005121 ORTHO05D006115 6.8e-128 461.1 304 71.4
Zm00001eb397460 Zea mays HOM05D005121 ORTHO05D006115 6.8e-128 461.1 304 71.4
Zm00001eb397440 Zea mays HOM05D005121 ORTHO05D006115 8.8e-128 460.7 305 72.8
Zm00001eb397470 Zea mays HOM05D005121 ORTHO05D006115 1.2e-127 460.3 304 71.4
Zm00001eb397480 Zea mays HOM05D005121 ORTHO05D006115 2.0e-127 459.5 304 71.4
Pp3c9_6940 Physcomitrium patens HOM05D005121 ORTHO05D006115 2.6e-119 432.6 304 67.1
Migut.H01530 Erythranthe guttata HOM05D005121 ORTHO05D006115 9.8e-119 430.6 300 69.7
Mapoly0029s0083 Marchantia polymorpha HOM05D005121 ORTHO05D006115 9.8e-119 430.6 306 68.3
Pp3c15_12040 Physcomitrium patens HOM05D005121 ORTHO05D006115 9.2e-117 424.1 304 66.8
unitig_749.g13632 Utricularia gibba HOM05D005121 ORTHO05D006115 3.3e-114 415.6 305 69.2
Actinidia11821 Actinidia chinensis HOM05D005121 ORTHO05D006115 2.0e-111 406.4 261 78.2
SMO147G0402 Selaginella moellendorffii HOM05D005121 ORTHO05D006115 2.0e-111 406.4 303 65.3
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 4.1e-109 398.7 225 84.9
Atru.chr10.2037 Acer truncatum HOM05D005121 ORTHO05D006115 9.2e-109 397.5 235 81.3
AagrBONN_evm.TU.Sc2ySwM_344.3296 Anthoceros agrestis HOM05D005121 ORTHO05D006115 1.6e-105 386.7 303 62.0
vmacro15854 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 1.7e-102 376.7 225 83.6
CBR_g4035 Chara braunii HOM05D005121 ORTHO05D006115 1.3e-99 367.1 311 59.8
Ah.09g236300 Amaranthus hybridus HOM05D005121 ORTHO05D006115 2.3e-91 339.7 228 74.1
HPP92_010075 Vanilla planifolia HOM05D005121 ORTHO05D006115 5.1e-91 338.6 210 76.7
HanXRQChr10g0310231 Helianthus annuus HOM05D005121 ORTHO05D006115 8.7e-75 284.6 160 86.9
Peaxi162Scf01035g00217 Petunia axillaris HOM05D005121 ORTHO05D006115 1.5e-71 273.9 181 75.1
Cpa.g.sc27.158 Carica papaya HOM05D005121 ORTHO05D006115 3.4e-71 272.7 143 91.6
BcaB04g20348 Brassica carinata HOM05D005121 ORTHO05D006115 4.6e-68 262.3 149 82.6
BcaB04g20349 Brassica carinata HOM05D005121 ORTHO05D006115 3.5e-60 236.1 154 73.4
Sed0008986 Sechium edule HOM05D005121 ORTHO05D006115 1.8e-56 223.8 301 47.5
Zm00001eb396290 Zea mays HOM05D005121 ORTHO05D006115 2.4e-56 223.4 153 67.3
SHI00053 Sapria himalayana HOM05D005121 ORTHO05D006115 1.8e-40 170.6 136 58.8
Peaxi162Scf00047g00079 Petunia axillaris HOM05D005121 ORTHO05D006115 2.4e-40 170.2 80 93.8
CARHR260990 Cardamine hirsuta HOM05D005121 ORTHO05D006115 6.9e-40 168.7 125 65.6
vmacro15853 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 3.4e-39 166.4 80 93.8
ATR1132G008 Amborella trichopoda HOM05D005121 ORTHO05D006115 7.7e-39 165.2 89 84.3
Ah.09g236480 Amaranthus hybridus HOM05D005121 ORTHO05D006115 1.0e-38 164.9 79 93.7
Ah.14g088780 Amaranthus hybridus HOM05D005121 ORTHO05D006115 8.5e-38 161.8 205 48.3
BolC1t03821H Brassica oleracea HOM05D005121 ORTHO05D006115 4.2e-37 159.5 80 86.2
MCO09G390 Micromonas commoda HOM05D005121 ORTHO05D006115 2.1e-36 157.1 300 34.3
Cre02.g142086 Chlamydomonas reinhardtii HOM05D005121 ORTHO05D006115 4.6e-36 156.0 306 36.3
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 3.2e-29 133.3 111 64.0
Hma1.2p1_0155F.1_g068340 Hydrangea macrophylla HOM05D005121 ORTHO05D006115 1.1e-26 124.8 76 76.3
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 2.0e-23 114.0 58 86.2
Atru.chr10.2036 Acer truncatum HOM05D005121 ORTHO05D006115 1.0e-22 111.7 60 85.0
SGA_v2.0_scaffold7G03907 Striga asiatica HOM05D005121 ORTHO05D006115 6.5e-22 109.0 64 79.7
PRCOL_00001084 Prasinoderma coloniale HOM05D005121 ORTHO05D006115 1.7e-17 94.4 296 30.1
TAR626G1242 Trochodendron aralioides HOM05D005121 ORTHO05D006115 2.0e-15 87.4 69 68.1
Cfa022197 Carpinus fangiana HOM05D005121 ORTHO05D006115 3.8e-14 83.2 245 29.0


User provided reference genes

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