Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g18100 Coffea canephora HOM05D005608 ORTHO05D007543 9.7e-169 596.7 286 100.0
QL07p003736 Quercus lobata HOM05D005608 ORTHO05D007543 1.7e-149 532.7 284 87.0
Manes.08G052000 Manihot esculenta HOM05D005608 ORTHO05D007543 5.5e-148 527.7 284 86.3
CiPaw.09G040300 Carya illinoinensis HOM05D005608 ORTHO05D007543 2.1e-147 525.8 284 87.0
SalBow6G4364 Salvia bowleyana HOM05D005608 ORTHO05D007543 4.7e-147 524.6 283 85.5
GSVIVG01033232001 Vitis vinifera HOM05D005608 ORTHO05D007543 4.7e-147 524.6 284 85.2
Prupe.7G053400 Prunus persica HOM05D005608 ORTHO05D007543 1.8e-146 522.7 286 85.3
CANSAT80G2626 Cannabis sativa HOM05D005608 ORTHO05D007543 2.3e-146 522.3 285 87.0
Oeu017928.1 Olea europaea HOM05D005608 ORTHO05D007543 5.2e-146 521.2 281 86.1
Duzib106G2070 Durio zibethinus HOM05D005608 ORTHO05D007543 8.8e-146 520.4 284 84.9
CAN.G676.7 Capsicum annuum HOM05D005608 ORTHO05D007543 4.4e-145 518.1 284 84.9
Gohir.A01G193800 Gossypium hirsutum HOM05D005608 ORTHO05D007543 4.4e-145 518.1 284 84.2
Atru.chr1.1230 Acer truncatum HOM05D005608 ORTHO05D007543 7.5e-145 517.3 284 84.5
Thecc.05G148100 Theobroma cacao HOM05D005608 ORTHO05D007543 7.5e-145 517.3 282 84.4
Nitab4.5_0001618g0150 Nicotiana tabacum HOM05D005608 ORTHO05D007543 1.7e-144 516.2 284 84.2
RcHm_v2.0_Chr3g0483631 Rosa chinensis HOM05D005608 ORTHO05D007543 1.7e-144 516.2 283 85.2
PSO339G6269 Papaver somniferum HOM05D005608 ORTHO05D007543 2.2e-144 515.8 284 84.2
EL10Ac3g07137 Beta vulgaris HOM05D005608 ORTHO05D007543 2.8e-144 515.4 284 83.8
Haze_19791 Corylus avellana HOM05D005608 ORTHO05D007543 2.8e-144 515.4 284 85.6
Haze_19795 Corylus avellana HOM05D005608 ORTHO05D007543 2.8e-144 515.4 284 85.6
PSO384G3225 Papaver somniferum HOM05D005608 ORTHO05D007543 3.7e-144 515.0 284 83.8
Solyc04g016360.3 Solanum lycopersicum HOM05D005608 ORTHO05D007543 4.8e-144 514.6 284 84.5
Sabra06G0032700 Salix brachista HOM05D005608 ORTHO05D007543 6.3e-144 514.2 284 83.5
Sc19g0008540 Simmondsia chinensis HOM05D005608 ORTHO05D007543 6.3e-144 514.2 284 83.5
PGSC0003DMG401012699 Solanum tuberosum HOM05D005608 ORTHO05D007543 6.3e-144 514.2 284 84.2
Ciclev10005572m.g Citrus clementina HOM05D005608 ORTHO05D007543 8.2e-144 513.8 282 86.2
MD14G1077300 Malus domestica HOM05D005608 ORTHO05D007543 8.2e-144 513.8 284 82.7
Gohir.D01G184100 Gossypium hirsutum HOM05D005608 ORTHO05D007543 1.1e-143 513.5 284 84.5
Gorai.002G227600 Gossypium raimondii HOM05D005608 ORTHO05D007543 1.1e-143 513.5 284 84.5
CANSAT80G0897 Cannabis sativa HOM05D005608 ORTHO05D007543 1.8e-143 512.7 290 84.8
Potri.006G047000 Populus trichocarpa HOM05D005608 ORTHO05D007543 1.8e-143 512.7 284 83.1
DCAR_013613 Daucus carota HOM05D005608 ORTHO05D007543 2.4e-143 512.3 283 82.7
FAN05G0975 Fragaria x ananassa HOM05D005608 ORTHO05D007543 2.4e-143 512.3 286 83.9
Cfa016779 Carpinus fangiana HOM05D005608 ORTHO05D007543 3.1e-143 511.9 284 85.2
TWI77G0221 Tripterygium wilfordii HOM05D005608 ORTHO05D007543 5.3e-143 511.1 284 82.0
FvH4_6g24520 Fragaria vesca HOM05D005608 ORTHO05D007543 7.0e-143 510.8 283 83.7
FAN02G1028 Fragaria x ananassa HOM05D005608 ORTHO05D007543 7.0e-143 510.8 284 83.5
Nitab4.5_0000826g0060 Nicotiana tabacum HOM05D005608 ORTHO05D007543 7.0e-143 510.8 282 84.4
CsaV3_4G027510 Cucumis sativus L. HOM05D005608 ORTHO05D007543 9.1e-143 510.4 282 83.7
Sopen04g008450 Solanum pennellii HOM05D005608 ORTHO05D007543 9.1e-143 510.4 284 83.5
CSS0026365 Camellia sinensis var. sinensis HOM05D005608 ORTHO05D007543 1.2e-142 510.0 284 82.0
Lj1A1125T63 Lonicera japonica HOM05D005608 ORTHO05D007543 1.2e-142 510.0 287 84.3
Hund24681 Selenicereus undatus HOM05D005608 ORTHO05D007543 1.6e-142 509.6 284 82.7
Actinidia39202 Actinidia chinensis HOM05D005608 ORTHO05D007543 2.0e-142 509.2 284 82.4
MELO3C026333.2 Cucumis melo HOM05D005608 ORTHO05D007543 2.6e-142 508.8 282 83.7
HanXRQChr04g0125051 Helianthus annuus HOM05D005608 ORTHO05D007543 2.6e-142 508.8 283 83.7
TAR633G2234 Trochodendron aralioides HOM05D005608 ORTHO05D007543 2.6e-142 508.8 284 83.8
Hma1.2p1_0110F.1_g052840 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 1.0e-141 506.9 284 82.0
Hma1.2p1_1997F.1_g310445 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 1.0e-141 506.9 284 82.0
Nn2g15128 Nelumbo nucifera HOM05D005608 ORTHO05D007543 1.3e-141 506.5 281 83.3
Phvul.007G250500 Phaseolus vulgaris HOM05D005608 ORTHO05D007543 2.9e-141 505.4 284 81.0
TAR369G0715 Trochodendron aralioides HOM05D005608 ORTHO05D007543 2.9e-141 505.4 282 83.7
Aqoxy2G00245 Aquilegia oxysepala HOM05D005608 ORTHO05D007543 3.8e-141 505.0 284 82.0
Sed0023334 Sechium edule HOM05D005608 ORTHO05D007543 1.9e-140 502.7 282 81.6
Eucgr.K02019 Eucalyptus grandis HOM05D005608 ORTHO05D007543 2.5e-140 502.3 286 81.8
Lalb_Chr06g0173501 Lupinus albus HOM05D005608 ORTHO05D007543 2.5e-140 502.3 284 83.5
vmacro21968 Vaccinium macrocarpon HOM05D005608 ORTHO05D007543 2.5e-140 502.3 284 81.3
MSTRG.19838 Avicennia marina HOM05D005608 ORTHO05D007543 3.2e-140 501.9 281 82.6
FAN14G1555 Fragaria x ananassa HOM05D005608 ORTHO05D007543 3.2e-140 501.9 286 82.2
MSTRG.26133 Avicennia marina HOM05D005608 ORTHO05D007543 4.2e-140 501.5 288 81.9
Lj5g0018305 Lotus japonicus HOM05D005608 ORTHO05D007543 9.4e-140 500.4 287 81.5
TAR369G0194 Trochodendron aralioides HOM05D005608 ORTHO05D007543 9.4e-140 500.4 282 83.0
Rhsim03G0028900 Rhododendron simsii HOM05D005608 ORTHO05D007543 2.7e-139 498.8 288 81.6
Glyma.02G186700 Glycine max HOM05D005608 ORTHO05D007543 3.6e-139 498.4 282 81.9
Aa31LG1G23580 Aethionema arabicum HOM05D005608 ORTHO05D007543 4.7e-139 498.0 285 81.1
Migut.J01725 Erythranthe guttata HOM05D005608 ORTHO05D007543 4.7e-139 498.0 281 82.6
SGA_v2.0_scaffold273G46432 Striga asiatica HOM05D005608 ORTHO05D007543 6.1e-139 497.7 272 83.8
THA.LOC104801987 Tarenaya hassleriana HOM05D005608 ORTHO05D007543 6.1e-139 497.7 285 80.7
Thhalv10017045m.g Eutrema salsugineum HOM05D005608 ORTHO05D007543 8.8e-138 493.8 284 79.2
Glyma.10G106900 Glycine max HOM05D005608 ORTHO05D007543 1.5e-137 493.0 282 80.5
VMungo0720G2960 Vigna mungo HOM05D005608 ORTHO05D007543 1.5e-137 493.0 282 79.8
arahy.Tifrunner.gnm1.ann1.RCN63F Arachis hypogaea HOM05D005608 ORTHO05D007543 3.4e-137 491.9 287 79.8
Peaxi162Scf00130g00829 Petunia axillaris HOM05D005608 ORTHO05D007543 4.4e-137 491.5 282 81.2
CARHR136660 Cardamine hirsuta HOM05D005608 ORTHO05D007543 7.5e-137 490.7 284 79.9
AL4G39630 Arabidopsis lyrata HOM05D005608 ORTHO05D007543 1.3e-136 490.0 284 79.9
AUR62026096 Chenopodium quinoa HOM05D005608 ORTHO05D007543 2.8e-136 488.8 301 77.1
TPR.G19657 Trifolium pratense HOM05D005608 ORTHO05D007543 2.8e-136 488.8 283 80.6
ECA236G2378 Erigeron canadensis HOM05D005608 ORTHO05D007543 4.8e-136 488.0 271 83.4
Medtr4g008660 Medicago truncatula HOM05D005608 ORTHO05D007543 8.3e-136 487.3 277 81.9
Sp4g23810 Schrenkiella parvula HOM05D005608 ORTHO05D007543 2.4e-135 485.7 284 77.8
A03p23310 Brassica napus HOM05D005608 ORTHO05D007543 3.1e-135 485.3 284 78.2
BraA03t11549Z Brassica rapa HOM05D005608 ORTHO05D007543 3.1e-135 485.3 284 78.2
BcaC01g05330 Brassica carinata HOM05D005608 ORTHO05D007543 5.4e-135 484.6 284 78.2
Peaxi162Scf00130g00828 Petunia axillaris HOM05D005608 ORTHO05D007543 7.0e-135 484.2 284 81.3
BcaNung04068 Brassica carinata HOM05D005608 ORTHO05D007543 9.1e-135 483.8 284 78.5
AT2G41530 Arabidopsis thaliana HOM05D005608 ORTHO05D007543 1.2e-134 483.4 284 78.9
BolC3t15154H Brassica oleracea HOM05D005608 ORTHO05D007543 1.2e-134 483.4 284 78.2
Medtr1g052175 Medicago truncatula HOM05D005608 ORTHO05D007543 1.2e-134 483.4 279 80.3
BcaB01g03463 Brassica carinata HOM05D005608 ORTHO05D007543 1.6e-134 483.0 284 77.8
C03p27830 Brassica napus HOM05D005608 ORTHO05D007543 1.6e-134 483.0 284 78.2
Lsat_1_v5_gn_8_82180 Lactuca sativa HOM05D005608 ORTHO05D007543 1.6e-134 483.0 330 70.9
arahy.Tifrunner.gnm1.ann1.QZL5XH Arachis hypogaea HOM05D005608 ORTHO05D007543 5.0e-133 478.0 301 75.4
BraA05t19229Z Brassica rapa HOM05D005608 ORTHO05D007543 5.0e-133 478.0 285 78.9
A05p02350 Brassica napus HOM05D005608 ORTHO05D007543 6.5e-133 477.6 285 78.9
C04p02790 Brassica napus HOM05D005608 ORTHO05D007543 8.5e-133 477.2 285 78.9
BolC4t21919H Brassica oleracea HOM05D005608 ORTHO05D007543 8.5e-133 477.2 285 78.9
Carub.0004s2382 Capsella rubella HOM05D005608 ORTHO05D007543 1.5e-132 476.5 284 77.5
Nitab4.5_0000636g0050 Nicotiana tabacum HOM05D005608 ORTHO05D007543 1.5e-132 476.5 284 79.2
CDE05G0378 Ceratophyllum demersum HOM05D005608 ORTHO05D007543 7.2e-132 474.2 281 77.2
HPP92_001434 Vanilla planifolia HOM05D005608 ORTHO05D007543 3.6e-131 471.9 279 77.8
Sed0008486 Sechium edule HOM05D005608 ORTHO05D007543 4.0e-130 468.4 282 76.2
ClCG04G003700 Citrullus lanatus HOM05D005608 ORTHO05D007543 2.6e-129 465.7 282 78.0
Ca_12257_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 1.8e-127 459.5 278 78.4
Ca_12243_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 2.4e-127 459.1 280 77.5
SEGI_13354 Sequoiadendron giganteum HOM05D005608 ORTHO05D007543 4.5e-126 454.9 278 75.9
ATR0721G011 Amborella trichopoda HOM05D005608 ORTHO05D007543 1.5e-124 449.9 275 75.6
Cpa.g.sc182.15 Carica papaya HOM05D005608 ORTHO05D007543 7.3e-124 447.6 246 83.7
unitig_21.g20519 Utricularia gibba HOM05D005608 ORTHO05D007543 2.3e-122 442.6 286 76.6
Sed0024564 Sechium edule HOM05D005608 ORTHO05D007543 1.5e-121 439.9 282 72.0
Os01g0939700 Oryza sativa ssp. japonica HOM05D005608 ORTHO05D007543 2.6e-121 439.1 276 72.1
Eucgr.K01713 Eucalyptus grandis HOM05D005608 ORTHO05D007543 1.8e-119 433.0 274 74.5
AUR62024510 Chenopodium quinoa HOM05D005608 ORTHO05D007543 3.5e-118 428.7 235 84.3
Pp3c11_8660 Physcomitrium patens HOM05D005608 ORTHO05D007543 1.0e-117 427.2 281 70.5
MBI19_g29889_MAGBIO Magnolia biondii HOM05D005608 ORTHO05D007543 8.0e-115 417.5 234 81.2
MD12G1082500 Malus domestica HOM05D005608 ORTHO05D007543 1.5e-108 396.7 225 84.0
Mapoly0020s0136 Marchantia polymorpha HOM05D005608 ORTHO05D007543 1.6e-107 393.3 279 66.7
SMO174G0027 Selaginella moellendorffii HOM05D005608 ORTHO05D007543 4.7e-107 391.7 277 67.1
CBR_g12387 Chara braunii HOM05D005608 ORTHO05D007543 8.1e-107 391.0 278 67.3
Dinv39657 Davidia involucrata HOM05D005608 ORTHO05D007543 2.8e-99 365.9 196 85.7
Zm00001eb363240 Zea mays HOM05D005608 ORTHO05D007543 2.6e-97 359.4 219 75.8
SalBow6G3992 Salvia bowleyana HOM05D005608 ORTHO05D007543 1.3e-93 347.1 288 62.2
Cre03.g158800 Chlamydomonas reinhardtii HOM05D005608 ORTHO05D007543 1.5e-92 343.6 283 59.7
COL.COLO4_32782 Corchorus olitorius HOM05D005608 ORTHO05D007543 7.8e-86 321.2 270 60.7
Haze_27232 Corylus avellana HOM05D005608 ORTHO05D007543 1.9e-79 300.1 311 48.9
TPR.G19661 Trifolium pratense HOM05D005608 ORTHO05D007543 7.4e-76 288.1 167 82.6
Psat6g091560 Pisum sativum HOM05D005608 ORTHO05D007543 2.4e-74 283.1 171 79.5
Haze_26706 Corylus avellana HOM05D005608 ORTHO05D007543 2.9e-64 249.6 273 46.5
PRCOL_00003320 Prasinoderma coloniale HOM05D000219 ORTHO05D000226 3.8e-64 249.2 283 48.1
MCO09G089 Micromonas commoda HOM05D000219 ORTHO05D000226 9.3e-63 244.6 277 46.9
Medtr0931s0010 Medicago truncatula HOM05D005608 ORTHO05D044358 7.4e-60 235.0 231 51.9
Medtr1g052165 Medicago truncatula HOM05D005608 ORTHO05D048895 3.7e-51 206.1 114 79.8
TPR.G23055 Trifolium pratense HOM05D005608 ORTHO05D048895 4.6e-46 189.1 103 81.6
Zm00001eb010250 Zea mays HOM05D005608 ORTHO05D007543 2.1e-22 110.5 82 64.6
Zm00001eb141600 Zea mays HOM05D005608 ORTHO05D007543 7.7e-17 92.0 61 68.9
SEGI_35043 Sequoiadendron giganteum HOM05D005608 ORTHO05D384886 8.0e-14 82.0 52 75.0
Pp3c1_10050 Physcomitrium patens HOM05D005608 ORTHO05D319324 2.2e-11 73.9 56 58.9
PSO765G0043 Papaver somniferum HOM05D005608 ORTHO05D302623 2.5e-07 60.5 43 72.1


User provided reference genes

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